prot_S-dermatodea_contig12107.1313.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig12107.1313.1
Unique Nameprot_S-dermatodea_contig12107.1313.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length215
Homology
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BLAST of mRNA_S-dermatodea_contig12107.1313.1 vs. uniprot
Match: D7G5T8_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5T8_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 7.460e-34
Identity = 65/80 (81.25%), Postives = 77/80 (96.25%), Query Frame = 0 
Query:    1 KDILRSVNLAGKKLTILTIGSSHTAGAGVGCFLRGHPTLKELELEWEGVRDLSAIAKALGDHQCLTRLNLTHNEIGPRGA 80
            ++ILR+V+ AGKKL+ILT+GSSHTAGAGVG FLRGHP+L+ELELEWEGVRDLS+IA+ALG+H+ LTRLNLTHNEIGPRGA
Sbjct:  500 RNILRAVSAAGKKLSILTVGSSHTAGAGVGSFLRGHPSLRELELEWEGVRDLSSIAQALGEHKSLTRLNLTHNEIGPRGA 579
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BLAST of mRNA_S-dermatodea_contig12107.1313.1 vs. uniprot
Match: A0A835Z0E5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0E5_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 5.980e-9
Identity = 34/63 (53.97%), Postives = 40/63 (63.49%), Query Frame = 0 
Query:   17 LTIGSSHTAGAGVGCFLRGHPTLKELELEWEGVRDLSAIAKALGDHQCLTRLNLTHNEIGPRG 79
            LT+GSSH+ GAGVG FL  +  L  LE+EWE VRD+  I + L     L  LNLTHN IG  G
Sbjct:  456 LTVGSSHSGGAGVGEFLAFNRALHTLEIEWEAVRDVEHICEGLRHAPGLLTLNLTHNSIGAEG 518
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12107.1313.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5T8_ECTSI7.460e-3481.25Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
A0A835Z0E5_9STRA5.980e-953.97Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 62..89
e-value: 1.3E-4
score: 31.3
coord: 174..201
e-value: 230.0
score: 0.5
coord: 118..145
e-value: 0.0046
score: 26.2
coord: 90..117
e-value: 4.7E-5
score: 32.8
coord: 146..173
e-value: 7.6
score: 10.9
NoneNo IPR availablePANTHERPTHR24113FAMILY NOT NAMEDcoord: 33..117
coord: 51..207
NoneNo IPR availablePANTHERPTHR24113:SF5RAN GTPASE-ACTIVATING PROTEINcoord: 33..117
coord: 51..207
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 13..201
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 116..209
e-value: 2.4E-18
score: 68.1
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..115
e-value: 3.5E-23
score: 83.7
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 63..84
e-value: 2.9E-4
score: 20.6
coord: 149..168
e-value: 1.8
score: 8.8
coord: 120..138
e-value: 6.1E-4
score: 19.6
coord: 89..112
e-value: 9.4E-5
score: 22.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12107contigS-dermatodea_contig12107:1755..7059 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12107.1313.1mRNA_S-dermatodea_contig12107.1313.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig12107 1755..7059 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig12107.1313.1 ID=prot_S-dermatodea_contig12107.1313.1|Name=mRNA_S-dermatodea_contig12107.1313.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=215bp
KDILRSVNLAGKKLTILTIGSSHTAGAGVGCFLRGHPTLKELELEWEGVR
DLSAIAKALGDHQCLTRLNLTHNEIGPRGAAQLADALRHNRSLTEIDLRE
NSLGPDGMKAIADALAENDSVRTLHLQDNAIGDDGVIAMTEALMRNGRLR
TVCLDGNKVSDVGAKVICIAIKMNLALKLLSLSRNALPDDSKRALYDAWK
QREVEEDQMHSGMYV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt