mRNA_S-dermatodea_contig12107.1313.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12107.1313.1
Unique NamemRNA_S-dermatodea_contig12107.1313.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12107.1313.1 vs. uniprot
Match: D7G5T8_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5T8_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 7.460e-34
Identity = 65/80 (81.25%), Postives = 77/80 (96.25%), Query Frame = 1 
Query:    1 KDILRSVNLAGKKLTILTIGSSHTAGAGVGCFLRGHPTLKELELEWEGVRDLSAIAKALGDHQCLTRLNLTHNEIGPRGA 240
            ++ILR+V+ AGKKL+ILT+GSSHTAGAGVG FLRGHP+L+ELELEWEGVRDLS+IA+ALG+H+ LTRLNLTHNEIGPRGA
Sbjct:  500 RNILRAVSAAGKKLSILTVGSSHTAGAGVGSFLRGHPSLRELELEWEGVRDLSSIAQALGEHKSLTRLNLTHNEIGPRGA 579
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BLAST of mRNA_S-dermatodea_contig12107.1313.1 vs. uniprot
Match: A0A835Z0E5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0E5_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 5.980e-9
Identity = 34/63 (53.97%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:   49 LTIGSSHTAGAGVGCFLRGHPTLKELELEWEGVRDLSAIAKALGDHQCLTRLNLTHNEIGPRG 237
            LT+GSSH+ GAGVG FL  +  L  LE+EWE VRD+  I + L     L  LNLTHN IG  G
Sbjct:  456 LTVGSSHSGGAGVGEFLAFNRALHTLEIEWEAVRDVEHICEGLRHAPGLLTLNLTHNSIGAEG 518
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12107.1313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5T8_ECTSI7.460e-3481.25Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
A0A835Z0E5_9STRA5.980e-953.97Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12107contigS-dermatodea_contig12107:1755..7059 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.7
Seed ortholog evalue3.3e-30
Seed eggNOG ortholog2880.D7G5T8
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-12_009090.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size645
Cds size645
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12107.1313.1prot_S-dermatodea_contig12107.1313.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12107 1755..7059 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924231.7419617-CDS-S-dermatodea_contig12107:1754..18741622924231.7419617-CDS-S-dermatodea_contig12107:1754..1874Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12107 1755..1874 +
1694079111.556487-CDS-S-dermatodea_contig12107:1754..18741694079111.556487-CDS-S-dermatodea_contig12107:1754..1874Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12107 1755..1874 +
1622924231.7560697-CDS-S-dermatodea_contig12107:2450..25521622924231.7560697-CDS-S-dermatodea_contig12107:2450..2552Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12107 2451..2552 +
1694079111.5685835-CDS-S-dermatodea_contig12107:2450..25521694079111.5685835-CDS-S-dermatodea_contig12107:2450..2552Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12107 2451..2552 +
1622924231.7647853-CDS-S-dermatodea_contig12107:4506..46651622924231.7647853-CDS-S-dermatodea_contig12107:4506..4665Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12107 4507..4665 +
1694079111.5888622-CDS-S-dermatodea_contig12107:4506..46651694079111.5888622-CDS-S-dermatodea_contig12107:4506..4665Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12107 4507..4665 +
1622924231.7755215-CDS-S-dermatodea_contig12107:5419..55121622924231.7755215-CDS-S-dermatodea_contig12107:5419..5512Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12107 5420..5512 +
1694079111.602811-CDS-S-dermatodea_contig12107:5419..55121694079111.602811-CDS-S-dermatodea_contig12107:5419..5512Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12107 5420..5512 +
1622924231.7850912-CDS-S-dermatodea_contig12107:6888..70591622924231.7850912-CDS-S-dermatodea_contig12107:6888..7059Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12107 6889..7059 +
1694079111.61272-CDS-S-dermatodea_contig12107:6888..70591694079111.61272-CDS-S-dermatodea_contig12107:6888..7059Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12107 6889..7059 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12107.1313.1

>prot_S-dermatodea_contig12107.1313.1 ID=prot_S-dermatodea_contig12107.1313.1|Name=mRNA_S-dermatodea_contig12107.1313.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=215bp
KDILRSVNLAGKKLTILTIGSSHTAGAGVGCFLRGHPTLKELELEWEGVR
DLSAIAKALGDHQCLTRLNLTHNEIGPRGAAQLADALRHNRSLTEIDLRE
NSLGPDGMKAIADALAENDSVRTLHLQDNAIGDDGVIAMTEALMRNGRLR
TVCLDGNKVSDVGAKVICIAIKMNLALKLLSLSRNALPDDSKRALYDAWK
QREVEEDQMHSGMYV
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mRNA from alignment at S-dermatodea_contig12107:1755..7059+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12107.1313.1 ID=mRNA_S-dermatodea_contig12107.1313.1|Name=mRNA_S-dermatodea_contig12107.1313.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5305bp|location=Sequence derived from alignment at S-dermatodea_contig12107:1755..7059+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGGACATCCTGAGGTCAGTTAACCTGGCCGGCAAAAAGCTGACAATTCT
CACGATCGGGAGCTCCCACACAGCGGGGGCCGGCGTGGGATGCTTCCTCA
GGGGGCATCCCACACTCAAGGTACATATATTTTCATACCCAAATAACTCG
AATATAACCAGTGTCAGTTGATTTAGCAGAATTATAATAATAGGTGGAAC
ACCATCATTGTGGGGCGCATATGCATTATTCCAAGGAAATATCTCTTGTC
CCCTACACGCACATCCCGGAGGAGGTTTCCAACATCCACGGCCGAGGCTG
ATCGATATTAGCATAATACATAGCGTACCCCCCCCCCCTGAAGACAGTAT
AATAAAGATTTATGAACACAGAACTAGAATTGGGGGCAAACCAATATTTT
TGGTATTATAGAGGAAAAAAGAAGGCCCAATCTAGCTCAGTGGGAGCCTA
CATTATATACGTAACCCCCCCCCCCCCCCCCCCCACACTTTTTCCCCCCC
ACACACCGCCCCCCGCAACGCGGCGCAGGGGGAGNNNNNNNNNNAAACAT
GAAATAGAAGTAGCGTCCAACGGATCTGGTTGTGATAAACTGAGAAAAAA
AGTGGCTCAAGCCCGCTCATTTGTATTCATAGATAAAAACGTACCCCCCC
CCCCCCCCCCGTGCCATATGTATTCCCATCAATCCACGGCACGCAGGAAC
TGGAGCTGGAGTGGGAAGGCGTGCGAGATCTGAGCGCGATAGCCAAGGCG
CTGGGGGATCACCAGTGCCTCACCCGCCTCAATCTCACCCACAACGAGGT
GCTCATGCGTATGATATGGTATGGTAGATGGTATGGTAGATGGTCTGGTA
GATGGTATGGTAGATGGTATGGTAGGCGTGAGCCACGGGCGAAGCTGGCG
CGCAAGGCGGCTTTGTGGGACTGCTGTTCTCCGTGTCTGCGGTATTGTAG
GACTGCTGCTGCGCTTTAGGGTTAGGGCTATAAGCTGTGTAGGGGGGTGT
GGTGTCGCCAGCGTCTCTGTCGTGGACGGCGAGGGTTGTGTTCATGCGCG
AGTGTATTTAACCCTTTTGGTACTATTGTACTCGTAATAGTATCAGTACT
AATAAATTTAGTATTACTAGGGCTCATCGAAACGACCAAAAACTCTCTCG
ATGCCAGTCGACAGCTACAGCCCCGTTTCCCTTGGGCTCCGTTCTCTCTC
ATTCCACGCTTCAAGCACGCCTCATTACGTGCTAACCGGCGCTCCAAACA
GGGGGCTAGTACCAAAAGGGTTAATAGTAGCATATGCACAAATGCCCACT
GATTTAGTCAACTCTGCGAAGTGGTGGACCTATCTTGGAAGCACTTTATT
ATACAGTATAATACCACGTCTACATCCTCCTTTTAATTTAATATAACGGA
GGACTATACCACAGTTAACGTTAACAGGTCCAAATTTGCTATTACACAAG
TCTCAACCTAGAAAAATCAAAATATCAAAATAGGCTGAAATTATGAATTA
TCGAAATTTCAAGGTCGATGTTCTTGTGTATGGCCACATCTCGTGCCTTT
TATTTTTTTCATGAGATTTTTTTTGTGTGGGTATTCATGGTCGGAATTGG
TTGGGTATTGTATTGTATTCATGGTCATGAGATTTGGTCCTGAATACTTG
ATTATTACTGGATTATAGTGTACCTCCGTAATAGTTGCTCGATTCTGATA
TCGGCCCATGATCATACATGCGTGTATCATTCCCAGCCTATCAATAGTTA
AATTAATATTAACAGTTGTATTAATAGTTGTATTCACTTTAATACTACAA
GTACACCCTTTCGTCGATCGATGTGCAGGTCCTTGACAATACAAATATCC
GACGCCATACAATATACAAGATACAACGCAGTTCAATATATATTATATTA
GTATAGTACTGTAGTGCAGTATACAACACAGTTCAATATGCTATATGTGT
ACCCGTCTAAAATATGTGGCGAGAAAAAATGTATTGAGGGAATAAAAATA
AGCGGCAATTTGTCACCCCGACATTTATCTACTGGAAATGTATCATATCG
TTCTGGAAATGGATCAAGGTTCTGCTAGTATTCCCTTTTATTTTTTCTGC
TTTGCAGAGCTAGCCCTGCAGTAAAACACCTTATTCATCGCCGCTGCGAT
AGGGAAAAAGCTATTATAATATTATTACCCAAACCAAATCCGACGGCTGT
TGTCTCTCTTTATTATGTAAATAGACGCGTTGAAGTTTTTTTTTTTATGG
AGCATTTAGAGTTGGCCCTTGGCCAAATCGGTAGGGCTCACCATGCAGAG
TACAAGTGATTTTTTAAATATTTTTTCGGACCTTTCGCCGGCTCGTCCGT
TCTCTTTAGCTTTAAACCCTTTGGGTACTACAGTACTTGTATAATATTAT
TAATGTTAATAGTATTAATAGGGCTCTCCCAAACGGCCAAAAACTCTCTC
GATGCCAGTCGACACCTACAACCCCGCATCCCTTCGGCTGACGCCGTTCC
GTTCTCTCTCATTCCTGCGTCATAACCCATGGCACTAGGGTTTCCCAAGG
CCCCGCTTTAAGCACGCCTCATTACGTGCTAACCGTTGGTCCAAACAGGG
GGCTATTAATAGTCCCAAAAGGGGTAAAAATAAAAATATATAAATCGTCA
ACCAATCAGCACAGGCACGCATGCACTTGTCTGTCGACCAACGAAAGCCC
TTTCGCTCAAAAAATATGTCTTCGCTTTTCCCTCCGCTCGCCTGCCCGCC
AGATCGGCCCGCGCGGGGCGGCTCAGCTGGCCGACGCGTTGCGACACAAC
CGATCTCTGACGGAGATAGACCTAAGGGAAAACAGCTTGGGTCCCGACGG
GATGAAGGCTATCGCAGACGCGCTGGCGGAAAATGACAGCGTCAGGACAC
TGCATTTACAGGTGTGTGTGTCATACAAGTATAAAATGTGTGTCTATTAA
TAGTGTGTGTGTGTGTGTTTTTTTTTCTTTTTTTTCGGAGACTGGTAGTG
TAAGAAAAAAAAAAGTTTCAACGGGTTGGCGGTCGGTAGTGTTTGATTTT
TGGTCGGCGCTGGTAGGGTAGTTGAAGAAGGCAAAAAGGGCCCAACCGGT
TGGCGGTCGGTATGAGAGTGATTATGTGACATTTTTGGACGGTCCTGGTA
CATACTGTAGGGTAATGTAATGTCCGTCGCATCCGGTCACGTCAGAACCT
CTTCTTTTTTTCACCTTCACCCCCCCTAAAAAATAAAGATGTCAGAAACA
TAAAGTGAGCGTTGGGGTCCCACCTTTTCAAGAGGTAAGATGGTCCAAGC
TACACTTATGGAGGCTCAGTTGTTACATATGATGCTGTGGTATCGTATCA
TGTATGATGTTATATGGTTGTGGTATCATACCGGACGTGAGTCTTTTGAC
CTGAAGTATATCCTGGTGATATATCTTTGCTGCCCCCACCCCACACTTGC
CGGCTTAATGGGCGTCGCAAACGCAAGGGTGATGACTGGCAGCTGGTATC
ATATCATTCTTGTGAAACGCAGCCTGGCCGGCGGAAACTTGGCATGTCGC
TCCGTCCCGGCATTGTTGGGATGCATGGTCTATGTCCGTTTGATTTATGC
CATGTCATATGATAACGAAATGCGTTGAAACACGAGTAACCCCCCCCCCC
CCCGCCCCCTTGCAGGATAACGCCATCGGAGATGACGGCGTGATCGCCAT
GACGGAGGCGTTAATGCGAAACGGCCGGTTGAGGACCGTGTGTCTCGATG
GCAATAAGGTAAGCGAGTCGTTGGTGGGAAGGGGGAAGGGGAAAAGGGAA
AGTGACGGGTATCGATTGAGCGATGTGACTGATTTGACGGATTGATTGAT
AAGCAAACTTACAACCGACCGGTCCGCCAATGGGCGGTTGCCGATCCCGC
TCGTGGTCAGATGAGAAATCGAGAGATAATAACAAAAGTACGATTTATAA
TATGATAGGACGGGGAACCATAGTTAACAGGTCCAAATTTGCCACAAGTC
TCAGCCTACATAGGAAAAACGAAAAAGGCTGGAAGTATCGAAATTTCAAG
GTCGGTCTTCTTGCATGTGGCCAAAATCTCGTTTTTCTTTTTTTTTTTCG
TTAGATTTTAGTTGTTTGGGTACTCATAATCGGAATAGTTGAGTATTCAT
GGTCGTGAGATTTGGTCCTGATTAGTGCTGTGTACCTCCGTTATAGTAAC
TACCGGTATTTATATATGGGAGGCTTTTTTCTGGTTCCTGATTTCTCATC
CGCCCACGAGGAGCGAGATCGGCAATGGTCTGGCGGGCCGGTCGGTTGTG
AGCAACTGTGATGATCAAATCGATTCTGATTAAAAAATAAAAATATAACA
TTGTTCAATTTATGCTGCGGTTCTGAGCGGGAGAGTGCCGCTTTGGTTCC
GCACCTTCCACCAAAACACGCCACCCTACCTCGAAAACCCCGTCAACTGT
AGGCGAGGGGATCGTTTTTTCTTATTTCTGTGTTTTGTTTGTTTTTTTCT
TTTCTTAGCGGGCCCAAGTCCCACGTTTCCGAGATTTAGCTTACGTCAAT
AATTCTCTCGGTTCGGCACTTTTGTTTTTTGTTCTTCATTCTTTTTTTGC
GTAACGGTTCCCAGACTCGATGAGGACATCGCGGATGCGATGAGCCCTTC
CTATCGGAGAGGGGACGTTTTTTTTTTTTTTTTTGTACTACAGCGGAGGT
ACACAATAATCAGAACGAAATATCATTACCATGAATACCCAACTGTTCCG
ACCATGAATGCCCAAACAACAACTAAAATGTACCGGGGGGAAAAGAAAAC
ACGAGATTTGGCCGCATACAAGAAGACAACGCTCGGAAACGGAGAGGACA
TACTGTACAAATACCATGTTGTACATACAGCGGAGGAGGCGATGTCGTCG
TGTCAATTCCAATACGTGTATAAGTACAAGTAGTACTTGCACTGCGCAGA
TTATGACAATATCGTACACTACCCCTACCCTACCAGGACCGGTGATGATT
ATATTATGATGATGATGACGATGGTGATGATATGATATTAATGGTACCTT
CGAGCATCACCGCCTCATTCTCAAAATATTTTTACGCGCCCGTGTGTTTT
TCTGCGTCTATCATACGTGTGTCTGTACGTATAGGTGAGTGATGTGGGAG
CCAAGGTGATCTGCATCGCGATCAAGATGAACCTGGCGCTGAAGCTCCTG
AGCCTGTCTCGAAACGCCCTGCCCGACGACTCGAAGCGAGCGCTCTACGA
CGCGTGGAAGCAGCGAGAGGTGGAGGAGGATCAGATGCACAGCGGAATGT
ATGTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12107:1755..7059+

>mRNA_S-dermatodea_contig12107.1313.1 ID=mRNA_S-dermatodea_contig12107.1313.1|Name=mRNA_S-dermatodea_contig12107.1313.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1290bp|location=Sequence derived from alignment at S-dermatodea_contig12107:1755..7059+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGGACATCCTGAGGTCAGTTAACCTGGCCGGCAAAAAGCTGACAATTCT
CACGATCGGGAGCTCCCACACAGCGGGGGCCGGCGTGGGATGCTTCCTCA
GGGGGCATCCCACACTCAAGAAGGACATCCTGAGGTCAGTTAACCTGGCC
GGCAAAAAGCTGACAATTCTCACGATCGGGAGCTCCCACACAGCGGGGGC
CGGCGTGGGATGCTTCCTCAGGGGGCATCCCACACTCAAGGAACTGGAGC
TGGAGTGGGAAGGCGTGCGAGATCTGAGCGCGATAGCCAAGGCGCTGGGG
GATCACCAGTGCCTCACCCGCCTCAATCTCACCCACAACGAGGAACTGGA
GCTGGAGTGGGAAGGCGTGCGAGATCTGAGCGCGATAGCCAAGGCGCTGG
GGGATCACCAGTGCCTCACCCGCCTCAATCTCACCCACAACGAGATCGGC
CCGCGCGGGGCGGCTCAGCTGGCCGACGCGTTGCGACACAACCGATCTCT
GACGGAGATAGACCTAAGGGAAAACAGCTTGGGTCCCGACGGGATGAAGG
CTATCGCAGACGCGCTGGCGGAAAATGACAGCGTCAGGACACTGCATTTA
CAGATCGGCCCGCGCGGGGCGGCTCAGCTGGCCGACGCGTTGCGACACAA
CCGATCTCTGACGGAGATAGACCTAAGGGAAAACAGCTTGGGTCCCGACG
GGATGAAGGCTATCGCAGACGCGCTGGCGGAAAATGACAGCGTCAGGACA
CTGCATTTACAGGATAACGCCATCGGAGATGACGGCGTGATCGCCATGAC
GGAGGCGTTAATGCGAAACGGCCGGTTGAGGACCGTGTGTCTCGATGGCA
ATAAGGATAACGCCATCGGAGATGACGGCGTGATCGCCATGACGGAGGCG
TTAATGCGAAACGGCCGGTTGAGGACCGTGTGTCTCGATGGCAATAAGGT
GAGTGATGTGGGAGCCAAGGTGATCTGCATCGCGATCAAGATGAACCTGG
CGCTGAAGCTCCTGAGCCTGTCTCGAAACGCCCTGCCCGACGACTCGAAG
CGAGCGCTCTACGACGCGTGGAAGCAGCGAGAGGTGGAGGAGGATCAGAT
GCACAGCGGAATGTATGTGGTGAGTGATGTGGGAGCCAAGGTGATCTGCA
TCGCGATCAAGATGAACCTGGCGCTGAAGCTCCTGAGCCTGTCTCGAAAC
GCCCTGCCCGACGACTCGAAGCGAGCGCTCTACGACGCGTGGAAGCAGCG
AGAGGTGGAGGAGGATCAGATGCACAGCGGAATGTATGTG
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