mRNA_S-dermatodea_contig12098.1307.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12098.1307.1
Unique NamemRNA_S-dermatodea_contig12098.1307.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12098.1307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12098contigS-dermatodea_contig12098:1994..2337 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size346
Cds size312
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924230.837892-UTR-S-dermatodea_contig12098:1993..20251622924230.837892-UTR-S-dermatodea_contig12098:1993..2025Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12098 1994..2025 +
1694079110.778171-UTR-S-dermatodea_contig12098:1993..20251694079110.778171-UTR-S-dermatodea_contig12098:1993..2025Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12098 1994..2025 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924230.848268-CDS-S-dermatodea_contig12098:2025..23371622924230.848268-CDS-S-dermatodea_contig12098:2025..2337Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12098 2026..2337 +
1694079110.7889955-CDS-S-dermatodea_contig12098:2025..23371694079110.7889955-CDS-S-dermatodea_contig12098:2025..2337Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12098 2026..2337 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12098.1307.1prot_S-dermatodea_contig12098.1307.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12098 2026..2337 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12098.1307.1

>prot_S-dermatodea_contig12098.1307.1 ID=prot_S-dermatodea_contig12098.1307.1|Name=mRNA_S-dermatodea_contig12098.1307.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=104bp
MVAGALPPMLRQDPIVEATPPCRKKEGRGNDGGVLDYSAANQPLPLVERV
VQNKLEEPLAAASVSLGTVGDADDGEVEVCEPTAAKAERTVNEALEPTAI
GVSS
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mRNA from alignment at S-dermatodea_contig12098:1994..2337+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12098.1307.1 ID=mRNA_S-dermatodea_contig12098.1307.1|Name=mRNA_S-dermatodea_contig12098.1307.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=344bp|location=Sequence derived from alignment at S-dermatodea_contig12098:1994..2337+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGGTCGAACGTAGGTCGGCAAGGCGCCGCTCCATGGTAGCGGGGGCCCTG
CCACCAATGCTACGGCAAGATCCCATCGTCGAGGCGACACCACCGTGCCG
GAAGAAGGAAGGAAGAGGCAACGACGGCGGTGTTTTGGATTATTCGGCGG
CAAATCAACCCCTTCCGCTGGTCGAGCGCGTCGTGCAAAACAAGCTGGAG
GAGCCCCTGGCGGCGGCGAGTGTATCGTTGGGCACCGTTGGGGACGCTGA
TGATGGCGAGGTTGAGGTTTGCGAGCCCACTGCGGCAAAGGCTGAGAGGA
CGGTTAACGAAGCCTTGGAACCGACTGCGATTGGCGTGAGCAGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig12098:1994..2337+

>mRNA_S-dermatodea_contig12098.1307.1 ID=mRNA_S-dermatodea_contig12098.1307.1|Name=mRNA_S-dermatodea_contig12098.1307.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at S-dermatodea_contig12098:1994..2337+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTAGCGGGGGCCCTGCCACCAATGCTACGGCAAGATCCCATCGTCGA
GGCGACACCACCGTGCCGGAAGAAGGAAGGAAGAGGCAACGACGGCGGTG
TTTTGGATTATTCGGCGGCAAATCAACCCCTTCCGCTGGTCGAGCGCGTC
GTGCAAAACAAGCTGGAGGAGCCCCTGGCGGCGGCGAGTGTATCGTTGGG
CACCGTTGGGGACGCTGATGATGGCGAGGTTGAGGTTTGCGAGCCCACTG
CGGCAAAGGCTGAGAGGACGGTTAACGAAGCCTTGGAACCGACTGCGATT
GGCGTGAGCAGCATGGTAGCGGGGGCCCTGCCACCAATGCTACGGCAAGA
TCCCATCGTCGAGGCGACACCACCGTGCCGGAAGAAGGAAGGAAGAGGCA
ACGACGGCGGTGTTTTGGATTATTCGGCGGCAAATCAACCCCTTCCGCTG
GTCGAGCGCGTCGTGCAAAACAAGCTGGAGGAGCCCCTGGCGGCGGCGAG
TGTATCGTTGGGCACCGTTGGGGACGCTGATGATGGCGAGGTTGAGGTTT
GCGAGCCCACTGCGGCAAAGGCTGAGAGGACGGTTAACGAAGCCTTGGAA
CCGACTGCGATTGGCGTGAGCAGC
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