mRNA_S-dermatodea_contig12084.1298.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12084.1298.1
Unique NamemRNA_S-dermatodea_contig12084.1298.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12084.1298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12084contigS-dermatodea_contig12084:5585..6346 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size762
Cds size666
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924230.2469637-CDS-S-dermatodea_contig12084:5584..62501622924230.2469637-CDS-S-dermatodea_contig12084:5584..6250Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12084 5585..6250 +
1694079110.4241772-CDS-S-dermatodea_contig12084:5584..62501694079110.4241772-CDS-S-dermatodea_contig12084:5584..6250Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12084 5585..6250 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924230.2597802-UTR-S-dermatodea_contig12084:6250..63461622924230.2597802-UTR-S-dermatodea_contig12084:6250..6346Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12084 6251..6346 +
1694079110.432355-UTR-S-dermatodea_contig12084:6250..63461694079110.432355-UTR-S-dermatodea_contig12084:6250..6346Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12084 6251..6346 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12084.1298.1prot_S-dermatodea_contig12084.1298.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12084 5585..6250 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12084.1298.1

>prot_S-dermatodea_contig12084.1298.1 ID=prot_S-dermatodea_contig12084.1298.1|Name=mRNA_S-dermatodea_contig12084.1298.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=222bp
PVPKPRHVKYLFTISNSSLASGNIVLLLPPLSPRLKKNQPFAPHLRATGG
TRSASKKNTSHHGSFVFFSAHRSLQYNIFIYTTDRIFLSAVRLCLVTRDS
IITSLFYPRFLAFVFFASALSVWHSRSLSISRTVLDRPSRAFRGGGRGQK
IPYILFSRYYTCSTHLLQPRPCGQSGYNTKPPGPSPPPKKYTHTQPRCYD
LRLATVKQGVDGGGLIPVVRP*
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mRNA from alignment at S-dermatodea_contig12084:5585..6346+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12084.1298.1 ID=mRNA_S-dermatodea_contig12084.1298.1|Name=mRNA_S-dermatodea_contig12084.1298.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=762bp|location=Sequence derived from alignment at S-dermatodea_contig12084:5585..6346+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTGTACCGAAGCCAAGGCACGTGAAATACCTATTTACTATTAGTAATAG
CTCCCTTGCATCAGGCAACATCGTCCTCCTTCTCCCCCCCTTATCCCCTC
GTCTCAAGAAAAACCAACCGTTTGCACCACACCTTCGAGCCACGGGAGGG
ACACGCTCGGCCTCGAAAAAAAACACATCCCATCATGGCTCTTTTGTATT
TTTTTCTGCACATAGAAGCCTACAATATAATATATTTATATATACGACAG
ACCGTATATTTCTGAGTGCCGTTCGTCTGTGTCTTGTCACAAGGGATAGT
ATCATTACATCTCTTTTTTATCCCCGGTTTCTTGCCTTCGTTTTTTTCGC
GAGTGCATTATCGGTTTGGCACTCCCGCAGCTTGTCGATTTCTCGCACTG
TTCTTGATCGCCCTTCTCGCGCTTTCCGAGGCGGAGGTAGAGGACAAAAA
ATACCATACATACTTTTCTCGAGGTACTACACCTGTAGTACTCATCTGCT
TCAACCGCGCCCTTGCGGCCAATCCGGCTATAACACAAAGCCTCCCGGAC
CCAGCCCCCCCCCAAAAAAATACACACACACACAACCTCGCTGTTATGAT
TTACGATTAGCTACCGTTAAGCAGGGCGTTGACGGCGGCGGTCTCATCCC
AGTTGTGCGACCCTAGCGCCGCCCTGGCCTTATCCGCTGGAAACCCTATG
TCGCAAACCCTTCGCACCACAGCCTCGTTCGCTGCATTCGCTGCTGCGAA
CTCGCGCGCCTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12084:5585..6346+

>mRNA_S-dermatodea_contig12084.1298.1 ID=mRNA_S-dermatodea_contig12084.1298.1|Name=mRNA_S-dermatodea_contig12084.1298.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1332bp|location=Sequence derived from alignment at S-dermatodea_contig12084:5585..6346+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTGTACCGAAGCCAAGGCACGTGAAATACCTATTTACTATTAGTAATAG
CTCCCTTGCATCAGGCAACATCGTCCTCCTTCTCCCCCCCTTATCCCCTC
GTCTCAAGAAAAACCAACCGTTTGCACCACACCTTCGAGCCACGGGAGGG
ACACGCTCGGCCTCGAAAAAAAACACATCCCATCATGGCTCTTTTGTATT
TTTTTCTGCACATAGAAGCCTACAATATAATATATTTATATATACGACAG
ACCGTATATTTCTGAGTGCCGTTCGTCTGTGTCTTGTCACAAGGGATAGT
ATCATTACATCTCTTTTTTATCCCCGGTTTCTTGCCTTCGTTTTTTTCGC
GAGTGCATTATCGGTTTGGCACTCCCGCAGCTTGTCGATTTCTCGCACTG
TTCTTGATCGCCCTTCTCGCGCTTTCCGAGGCGGAGGTAGAGGACAAAAA
ATACCATACATACTTTTCTCGAGGTACTACACCTGTAGTACTCATCTGCT
TCAACCGCGCCCTTGCGGCCAATCCGGCTATAACACAAAGCCTCCCGGAC
CCAGCCCCCCCCCAAAAAAATACACACACACACAACCTCGCTGTTATGAT
TTACGATTAGCTACCGTTAAGCAGGGCGTTGACGGCGGCGGTCTCATCCC
AGTTGTGCGACCCTAGCCTGTACCGAAGCCAAGGCACGTGAAATACCTAT
TTACTATTAGTAATAGCTCCCTTGCATCAGGCAACATCGTCCTCCTTCTC
CCCCCCTTATCCCCTCGTCTCAAGAAAAACCAACCGTTTGCACCACACCT
TCGAGCCACGGGAGGGACACGCTCGGCCTCGAAAAAAAACACATCCCATC
ATGGCTCTTTTGTATTTTTTTCTGCACATAGAAGCCTACAATATAATATA
TTTATATATACGACAGACCGTATATTTCTGAGTGCCGTTCGTCTGTGTCT
TGTCACAAGGGATAGTATCATTACATCTCTTTTTTATCCCCGGTTTCTTG
CCTTCGTTTTTTTCGCGAGTGCATTATCGGTTTGGCACTCCCGCAGCTTG
TCGATTTCTCGCACTGTTCTTGATCGCCCTTCTCGCGCTTTCCGAGGCGG
AGGTAGAGGACAAAAAATACCATACATACTTTTCTCGAGGTACTACACCT
GTAGTACTCATCTGCTTCAACCGCGCCCTTGCGGCCAATCCGGCTATAAC
ACAAAGCCTCCCGGACCCAGCCCCCCCCCAAAAAAATACACACACACACA
ACCTCGCTGTTATGATTTACGATTAGCTACCGTTAAGCAGGGCGTTGACG
GCGGCGGTCTCATCCCAGTTGTGCGACCCTAG
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