mRNA_S-dermatodea_contig1204.1269.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1204.1269.1
Unique NamemRNA_S-dermatodea_contig1204.1269.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig1204.1269.1 vs. uniprot
Match: A0A6H5KT38_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT38_9PHAE)

HSP 1 Score: 404 bits (1039), Expect = 1.070e-121
Identity = 216/372 (58.06%), Postives = 253/372 (68.01%), Query Frame = 1 
Query:  355 GDMGLVDTLDWVQQVAAEKMEEMAALQASFNKEVA------SKGNIGNATDVREILAPFLKDQLDMAEATREMVNRVNEFR-----------GSVGASDGLDG----VQEQGKRVIDDKVKELREMLTKATV----------------------------GDGTGGG-------DVVKIHSGFKNAYSSVNRTLGAVVSSAADGRPEDWHVFITGHSLGGALATLATLDHRRRYPTAKVTMYNFGSPRVGNGAFARLYDSFVGDSFRVVNNMDVVARMPRGTMGGISLEYCHAGRTVMVAEDPTEPPWIQGESAGGCPLDERDIAKVLTEGSTDFFDLEVKIMQSLFSGKGIDHHMENNYFAALDSFYIPED 1302
            G+ GL DTL WVQQVA +KM+EMA+ Q    +E+       S+G + NAT+ REILA F ++QL+  EAT+E+V+RV EFR           G  G   GLDG    VQEQG++ IDDK+   + ML+  T                             GDG  GG       D  +IH+GF+ AY SVN TL AV+ SA +G+PEDWHV+ITGHSLGGALATLATLDH RRYP AKVTMYNFGSPRVGN AFA LYDSFVGDSFRVVNN+D+VARMPR TMGGISL+Y H GRTVMVAEDP EPPWIQGES G CPL+E D   +LT+G TDFF  E+  M++L SGKGIDHHME NYFAALDSFY P+D
Sbjct:  770 GERGLADTLAWVQQVAEQKMDEMASSQTFIGEEMRRQMQLLSEGKV-NATESREILAGFFREQLEKVEATKELVDRVEEFRESLGKVGVEWDGDAGGLVGLDGLQERVQEQGRKAIDDKIVSFQAMLSNVTALQQXXXXXXXXSWRGSENGGNVTTPVADGDGNDGGEEAAAAKDPPRIHAGFRRAYVSVNGTLSAVLGSAMEGKPEDWHVYITGHSLGGALATLATLDHCRRYPEAKVTMYNFGSPRVGNKAFAELYDSFVGDSFRVVNNLDIVARMPRATMGGISLDYQHCGRTVMVAEDPEEPPWIQGESGGECPLEETDPVMLLTQGKTDFFSAEIDFMKALLSGKGIDHHMEYNYFAALDSFYDPDD 1140
[Close]
BLAST of mRNA_S-dermatodea_contig1204.1269.1 vs. uniprot
Match: D8LR60_ECTSI (Lipase domain protein, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR60_ECTSI)

HSP 1 Score: 274 bits (701), Expect = 2.320e-83
Identity = 127/158 (80.38%), Postives = 142/158 (89.87%), Query Frame = 1 
Query:  793 DGRPEDWHVFITGHSLGGALATLATLDHRRRYPTAKVTMYNFGSPRVGNGAFARLYDSFVGDSFRVVNNMDVVARMPRGTMGGISLEYCHAGRTVMVAEDPTEPPWIQGESAGGCPLDERDIAKVLTEGSTDFFDLEVKIMQSLFSGKGIDHHMENNY 1266
            +G+PEDWHV+ITGHSLGGALATLATLDHRRRYP AKVTMYNFGSPRVGN AFA LYDSFVGDSFRVVNN+DVVARMPR TMGGISL+Y H+GRTVMVAEDP EPPWIQGES G CPL+E D   +LT+G+TDFF  E+  M++LFSGKGIDHHME+N+
Sbjct:    2 EGKPEDWHVYITGHSLGGALATLATLDHRRRYPEAKVTMYNFGSPRVGNKAFAELYDSFVGDSFRVVNNLDVVARMPRATMGGISLDYQHSGRTVMVAEDPEEPPWIQGESGGECPLEETDPVMLLTQGNTDFFSAEIDFMKALFSGKGIDHHMEHNW 159
[Close]
BLAST of mRNA_S-dermatodea_contig1204.1269.1 vs. uniprot
Match: A0A7S0TMB5_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TMB5_HEMAN)

HSP 1 Score: 162 bits (410), Expect = 4.330e-42
Identity = 95/203 (46.80%), Postives = 127/203 (62.56%), Query Frame = 1 
Query:  697 TGGGDVVKIHSGFKNAYSSVNRTLGAVVSSAADGRPEDWHVFITGHSLGGALATLATLDHRRRYPTAKVTMYNFGSPRVGNGAFARLYDSFVGDSFRVVNNMDVVARMPR----GTMGGISLEYCHAGRTVMVAEDPTEPP--WIQGESAGGCPLDER--DIAKVLTEGSTDFFDLEVKIMQSLFSGKGIDHHMENNYFAALD 1281
            T GG V   H GF +AY SV  ++  V++S      +D+ VF+TGHSLGGALATL  +D R R P   VTMYNFGSP+VG+ +F   Y+  V +SFRVVN+ DV AR+PR    G++ G+   Y H GRTV+ +   TE P  WI+GESAG  PL +R  D++++L        D EV +MQ L  G+G   H+EN Y AA++
Sbjct:    2 TAGGGVPHAHFGFASAYYSVRESIFRVLTSLIPPHEDDYEVFLTGHSLGGALATLCAVDVRVRMPHVGVTMYNFGSPKVGDESFVLRYNEIVPNSFRVVNDADVFARLPRNRGLGSVPGLPYFY-HVGRTVLTS---TEKPSAWIEGESAGEDPLKDRWADLSELL--------DAEVSLMQKLLDGRGWKEHVENGYHAAME 192
[Close]
BLAST of mRNA_S-dermatodea_contig1204.1269.1 vs. uniprot
Match: A0A7S0YX09_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YX09_9CRYP)

HSP 1 Score: 159 bits (401), Expect = 7.290e-41
Identity = 93/200 (46.50%), Postives = 125/200 (62.50%), Query Frame = 1 
Query:  706 GDVVKIHSGFKNAYSSVNRTLGAVVSSAADGRPEDWHVFITGHSLGGALATLATLDHRRRYPTAKVTMYNFGSPRVGNGAFARLYDSFVGDSFRVVNNMDVVARMPR----GTMGGISLEYCHAGRTVMVAEDPTEPP--WIQGESAGGCPLDER--DIAKVLTEGSTDFFDLEVKIMQSLFSGKGIDHHMENNYFAALD 1281
            G V   H GF +AY SV  ++  V+ +      E + VF+TGHSLGGALATL  +D R R P   VTMYNFGSP+VG+ AF   Y+S V +SFRVVN+ DV AR+PR    G++ G+   Y H GRTV+ +   TE P  W++GESAG  PL +R  DI+++L        D EV +MQ++  G+G   H+EN Y AA++
Sbjct:    1 GGVPHAHFGFASAYDSVRESIFRVLGAIIPPDEEGFEVFLTGHSLGGALATLCAVDVRTRMPHVSVTMYNFGSPKVGDEAFVLRYNSLVKNSFRVVNDADVFARLPRNKGIGSVPGLPYYY-HVGRTVLTS---TERPKAWVEGESAGEDPLKDRWGDISELL--------DAEVSLMQTVLDGRGWKSHVENGYHAAME 188
[Close]
BLAST of mRNA_S-dermatodea_contig1204.1269.1 vs. uniprot
Match: A0A7S0LWE7_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0LWE7_9CRYP)

HSP 1 Score: 143 bits (361), Expect = 4.360e-36
Identity = 79/160 (49.38%), Postives = 102/160 (63.75%), Query Frame = 1 
Query:  817 VFITGHSLGGALATLATLDHRRRYPTAKVTMYNFGSPRVGNGAFARLYDSFVGDSFRVVNNMDVVARMPRGTMGGISLEYCHAGRTVMVAEDPTEPPWIQGESAGGCPLDERDIAKVLTEGSTDFFDLEVKIMQSLFSGKGIDHHMENNYFAALDSFYIP 1296
            V +TGHSLG ALATL   D    +P A+VTMYN+GSPRVGN AFARL+D+ V D+FR+VN+ D+VAR+PR  +    L Y H GRTV+V+    +  W++GES G  PL ER      TE S +  + E+ +MQ L  G  I  HME+ YF AL    +P
Sbjct:    2 VLVTGHSLGAALATLCAADIAPLFPGARVTMYNYGSPRVGNRAFARLFDTLVPDAFRIVNDADLVARVPRTRL----LNYRHVGRTVLVSAQQGKRIWVEGESEGSDPLKER-----WTELS-ELLEAELSLMQGLVGGGSIADHMEDAYFRALVQALLP 151
[Close]
BLAST of mRNA_S-dermatodea_contig1204.1269.1 vs. uniprot
Match: A0A0G4EHV0_VITBC (C2 domain-containing protein n=4 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EHV0_VITBC)

HSP 1 Score: 155 bits (393), Expect = 3.270e-35
Identity = 83/210 (39.52%), Postives = 120/210 (57.14%), Query Frame = 1 
Query:  718 KIHSGFKNAYSSVNRTLGAVVSSAADGRPEDWHVFITGHSLGGALATLATLDH---------RRRYPTAKVTMYNFGSPRVGNGAFARLYDSFVGDSFRVVNNMDVVARMPRGTMGGISLEYCHAGRTVMVAEDPTEPPWIQGESAGGCPLDERDI--------------AKVLTEGSTDFFDLEVKIMQSLFSGKGIDHHMENNYFAAL 1278
            ++H+GF  AY S+   L  ++  A  G+  +W V +TGHSLGGALATL   D            R P  KV +YN+G+PRVGNGAF   +++ +GD+FRVVN+ DV+AR+PRG    I L+Y H GRTV+V E      WI+GE+ G  PL E +               +  L   + +F D EV ++ ++ +G+ + HH E+ Y AA+
Sbjct:  837 RVHAGFHQAYLSIRSRLHELIHEATGGQAGEWEVLVTGHSLGGALATLCAYDMATHGPVSRGEARGPPGKVLLYNYGAPRVGNGAFVEKFNAKIGDAFRVVNSRDVIARLPRGATAWI-LDYEHVGRTVLVDEAGQTNLWIEGETEGPNPLQEANPWGKDENGTLVFLGRSVELPRLTEEFIDREVAMLNTITNGEALSHHFEDQYHAAM 1045
[Close]
BLAST of mRNA_S-dermatodea_contig1204.1269.1 vs. uniprot
Match: L1J5S5_GUITC (Lipase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J5S5_GUITC)

HSP 1 Score: 147 bits (371), Expect = 1.200e-32
Identity = 82/190 (43.16%), Postives = 114/190 (60.00%), Query Frame = 1 
Query:  721 IHSGFKNAYSSVNR----TLGAVVSSAADGRPEDWHVFITGHSLGGALATLATLDHRRRYPTAKVTMYNFGSPRVGNGAFARLYDSFVGDSFRVVNNMDVVARMPRGTMGGISLEYCHAGRTVMVAEDPTEPPWIQGESAGGCPLDERDIAKVLTEGSTDFFDLEVKIMQSLFSGKGIDHHMENNYFAAL 1278
            +H GF   YSSV R     L  ++ S   G  E W +F+TGHSLGGAL+TL   D    +P + V MYNFGSPRVGN  F ++++  V ++FRVVN+ DVVAR+PR  +    + Y H GRT +V+   +   W++GESAG  PL ER      TE S    D E+ ++Q + +G  ++ HME+ YF +L
Sbjct:  722 VHVGFLRGYSSVRRRILQVLQVLLESEGAGGGE-WKIFVTGHSLGGALSTLCAADVAALFPQSAVVMYNFGSPRVGNLKFVQMFNQLVPEAFRVVNDADVVARVPRSRL----MNYHHVGRTALVSSSSSV--WVEGESAGSDPLKER-----WTELS-QLVDAEISLLQGIVNGNSLEDHMEDAYFLSL 898
[Close]
BLAST of mRNA_S-dermatodea_contig1204.1269.1 vs. uniprot
Match: A0A2V3IFT4_9FLOR (Lipase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFT4_9FLOR)

HSP 1 Score: 141 bits (356), Expect = 5.560e-31
Identity = 75/193 (38.86%), Postives = 111/193 (57.51%), Query Frame = 1 
Query:  709 DVVKIHSGFKNAYSSVNRTLGAVVSSAADGRPEDWHVFITGHSLGGALATLATLDHRRRYPTAKVTMYNFGSPRVGNGAFARLYDSFVGDSFRVVNNMDVVARMPRGTMGGISLEYCHAGRTVMVAEDPTEPPWIQGESAGGCPLDERDIAKVLTE---GSTDFFDLEVKIMQSLFSGKGIDHHMENNYFAAL 1278
            D + +H GF  AY SV  TL   + S      ED+ ++ TGHSLGGALA +A  D   R+   KV   ++G+P+VGN  FAR+Y+  V +SFRV+N+ D+++RMPR   G    +Y H+GRTV+V        WI+G +        R +  V+ E    ++D  ++E K+   L SG+ + HHME +YF A+
Sbjct:  574 DAIAVHYGFLRAYLSVQTTLLRCILSLTSNLEEDYKIYFTGHSLGGALAIVAAADFVARHRREKVCCMSYGAPKVGNLNFARMYNDLVPNSFRVINDTDIISRMPRSVSGEKISKYKHSGRTVLVNRQGEY--WIEGVNESVLQKG-RSVFDVIQERYCNASDMLEVEQKLWDDLLSGRSVQHHMECSYFTAM 763
[Close]
BLAST of mRNA_S-dermatodea_contig1204.1269.1 vs. uniprot
Match: A0A7S1H6Z8_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1H6Z8_HEMAN)

HSP 1 Score: 125 bits (315), Expect = 1.160e-29
Identity = 67/172 (38.95%), Postives = 95/172 (55.23%), Query Frame = 1 
Query:  811 WHVFITGHSLGGALATLATLDHRRRYPTAKVTMYNFGSPRVGNGAFARLYDSFVGDSFRVVNNMDVVARMPRGTMGGISLEYCHAGRTVMVAEDP---TEPPWIQGESAGGCPLDERDIAKVLTEGSTDFFDLEVKIMQSLFSGKGIDHHMENNYFAALDSFYIPEDASNKA 1317
            W +++TGHSLGGAL+T+   D   +YP  KV  YN+GSPRVGN  F + ++  V ++FRVVN+ DVVAR+PR        +Y H GRT +V+          W++GES G  PL +R          ++  D EV  +Q L  G+ +  HME+ Y+ AL      + A   A
Sbjct:    2 WTIYVTGHSLGGALSTICAADMAEKYPGCKVVNYNYGSPRVGNAPFVQGFNQAVPEAFRVVNDADVVARVPRSR----GFDYYHVGRTALVSRSGGGGRGSLWVEGESEGTDPLRDR------WSNLSELLDAEVAFLQGLVKGESLGDHMEDAYYEALQQALSAQKALGAA 163
[Close]
BLAST of mRNA_S-dermatodea_contig1204.1269.1 vs. uniprot
Match: M1V9X1_CYAM1 (Similar to triacylglycerol lipase n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1V9X1_CYAM1)

HSP 1 Score: 137 bits (344), Expect = 1.650e-29
Identity = 84/205 (40.98%), Postives = 112/205 (54.63%), Query Frame = 1 
Query:  721 IHSGFKNAYSSVNRTLGAVV-----SSAADGR--PEDWHVFITGHSLGGALATLATLD------------HRRRYPTAKVTMYNFGSPRVGNGAFARLYDSFVGDSFRVVNNMDVVARMPRGTMGGISLEYCHAGRTVMVAEDPTEPPWIQGESAGGCPLDERDIAKVLTEGSTDFFDLEVKIMQSLFSGKGIDHHMENNYFAAL 1278
            +H+GF  AY S+  T+  V       S  +G    E    F TGHSLG ALATLA LD             +R     ++ MYNFGSPRVGNG FAR +++ V D++R+VN+ DVVARMPR     +S +Y H G TV+V  D     WI+G+S G  PL ER           D   LE +  +S+F+ + + HH+E+ YF AL
Sbjct:  573 VHAGFAEAYRSIRETVRRVALYFVEKSRREGTLSSEGLEFFFTGHSLGAALATLAALDVTRVLEDRGIPLSQRARNGVRIRMYNFGSPRVGNGVFARTFNTLVPDAYRIVNDADVVARMPRT----LSFDYHHVGSTVLVNADGKL--WIEGQSPGRDPLKER------WSTIEDLIKLEQRAFESIFNNEALLHHLEDAYFVAL 765
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1204.1269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KT38_9PHAE1.070e-12158.06C2 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LR60_ECTSI2.320e-8380.38Lipase domain protein, partial n=1 Tax=Ectocarpus ... [more]
A0A7S0TMB5_HEMAN4.330e-4246.80Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
A0A7S0YX09_9CRYP7.290e-4146.50Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A7S0LWE7_9CRYP4.360e-3649.38Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A0G4EHV0_VITBC3.270e-3539.52C2 domain-containing protein n=4 Tax=Vitrella bras... [more]
L1J5S5_GUITC1.200e-3243.16Lipase n=1 Tax=Guillardia theta (strain CCMP2712) ... [more]
A0A2V3IFT4_9FLOR5.560e-3138.86Lipase n=1 Tax=Gracilariopsis chorda TaxID=448386 ... [more]
A0A7S1H6Z8_HEMAN1.160e-2938.95Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
M1V9X1_CYAM11.650e-2940.98Similar to triacylglycerol lipase n=1 Tax=Cyanidio... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1204contigS-dermatodea_contig1204:3793..9452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score275.4
Seed ortholog evalue3.5e-71
Seed eggNOG ortholog2880.D8LR60
EggNOG free text desc.phospholipase A1 activity
EggNOG OGsKOG4569@1,KOG4569@2759
Ec32 ortholog descriptionLipase domain protein
Ec32 orthologEc-06_004240.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons7
Model size2547
Cds size990
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924228.407013-UTR-S-dermatodea_contig1204:3792..41221622924228.407013-UTR-S-dermatodea_contig1204:3792..4122Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1204 3793..4122 +
1694079109.2939317-UTR-S-dermatodea_contig1204:3792..41221694079109.2939317-UTR-S-dermatodea_contig1204:3792..4122Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1204 3793..4122 +
1622924228.4802396-UTR-S-dermatodea_contig1204:8225..94521622924228.4802396-UTR-S-dermatodea_contig1204:8225..9452Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1204 8226..9452 +
1694079109.359711-UTR-S-dermatodea_contig1204:8225..94521694079109.359711-UTR-S-dermatodea_contig1204:8225..9452Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1204 8226..9452 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924228.415674-CDS-S-dermatodea_contig1204:4122..42031622924228.415674-CDS-S-dermatodea_contig1204:4122..4203Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1204 4123..4203 +
1694079109.303443-CDS-S-dermatodea_contig1204:4122..42031694079109.303443-CDS-S-dermatodea_contig1204:4122..4203Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1204 4123..4203 +
1622924228.4238758-CDS-S-dermatodea_contig1204:4863..51151622924228.4238758-CDS-S-dermatodea_contig1204:4863..5115Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1204 4864..5115 +
1694079109.3114862-CDS-S-dermatodea_contig1204:4863..51151694079109.3114862-CDS-S-dermatodea_contig1204:4863..5115Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1204 4864..5115 +
1622924228.4320257-CDS-S-dermatodea_contig1204:5524..56681622924228.4320257-CDS-S-dermatodea_contig1204:5524..5668Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1204 5525..5668 +
1694079109.3196442-CDS-S-dermatodea_contig1204:5524..56681694079109.3196442-CDS-S-dermatodea_contig1204:5524..5668Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1204 5525..5668 +
1622924228.4405954-CDS-S-dermatodea_contig1204:5820..59541622924228.4405954-CDS-S-dermatodea_contig1204:5820..5954Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1204 5821..5954 +
1694079109.3279293-CDS-S-dermatodea_contig1204:5820..59541694079109.3279293-CDS-S-dermatodea_contig1204:5820..5954Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1204 5821..5954 +
1622924228.4523296-CDS-S-dermatodea_contig1204:6501..66821622924228.4523296-CDS-S-dermatodea_contig1204:6501..6682Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1204 6502..6682 +
1694079109.3373318-CDS-S-dermatodea_contig1204:6501..66821694079109.3373318-CDS-S-dermatodea_contig1204:6501..6682Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1204 6502..6682 +
1622924228.463618-CDS-S-dermatodea_contig1204:7475..76171622924228.463618-CDS-S-dermatodea_contig1204:7475..7617Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1204 7476..7617 +
1694079109.344758-CDS-S-dermatodea_contig1204:7475..76171694079109.344758-CDS-S-dermatodea_contig1204:7475..7617Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1204 7476..7617 +
1622924228.472172-CDS-S-dermatodea_contig1204:8169..82251622924228.472172-CDS-S-dermatodea_contig1204:8169..8225Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1204 8170..8225 +
1694079109.3523083-CDS-S-dermatodea_contig1204:8169..82251694079109.3523083-CDS-S-dermatodea_contig1204:8169..8225Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1204 8170..8225 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1204.1269.1prot_S-dermatodea_contig1204.1269.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1204 4123..8225 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1204.1269.1

>prot_S-dermatodea_contig1204.1269.1 ID=prot_S-dermatodea_contig1204.1269.1|Name=mRNA_S-dermatodea_contig1204.1269.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=330bp
MAAVDVPGGDMGLVDTLDWVQQVAAEKMEEMAALQASFNKEVASKGNIGN
ATDVREILAPFLKDQLDMAEATREMVNRVNEFRGSVGASDGLDGVQEQGK
RVIDDKVKELREMLTKATVGDGTGGGDVVKIHSGFKNAYSSVNRTLGAVV
SSAADGRPEDWHVFITGHSLGGALATLATLDHRRRYPTAKVTMYNFGSPR
VGNGAFARLYDSFVGDSFRVVNNMDVVARMPRGTMGGISLEYCHAGRTVM
VAEDPTEPPWIQGESAGGCPLDERDIAKVLTEGSTDFFDLEVKIMQSLFS
GKGIDHHMENNYFAALDSFYIPEDASNKA*
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mRNA from alignment at S-dermatodea_contig1204:3793..9452+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1204.1269.1 ID=mRNA_S-dermatodea_contig1204.1269.1|Name=mRNA_S-dermatodea_contig1204.1269.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5660bp|location=Sequence derived from alignment at S-dermatodea_contig1204:3793..9452+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCGAAGGCAAGATCGCCGGCGGCGGGCGAGAGGCTAGTCTCGACGGTAG
CGGTGTTGAAGACGCGGGTAGGGGAGAGGCCGGGGCGATCGCGTCCACCA
AGGAGATAGTAGCGAGCGGTGGCCTCGGTGACGACAGTGGCCGTTCGTCA
GAAGAAAACCTTCTCGTTCGCAGCGACGGAGGCGGCGGCAGCTCGGGGAA
CAGCGGAGGTTCGGGCGGTAGGAGTCTGTGGGGACGACTGACGCAGGTGG
GGCGGAAGGTTGCGGAAAACGGCGGCGGTGACGGTAGCGGCGGCGACGGC
AACAAGAAAACCATCAACAGCACCGCGCGAATGGCTGCTGTGGATGTTCC
CGGTGGGGATATGGGGCTGGTAGATACGCTGGATTGGGTGCAGCAGGTCG
CCGCCGAAAAGGTCAGTGGTGAACTTTGGGCTGGAGCGGTGGAGGGGGGC
GGTTGGTCTGAAGAACGTGGGGGTCGCGCTTTTTGTTTGGAACTTCTCTG
TGTTTGCACGGACATATGCGAGTTCTGGTATAATACCACGAATAAACAAG
CTTGTCACACTCTGTAGGGCAGGGCCACGCTGCAGCGGTGTGGGTGGTGC
CAACAGACTGAACTCAAAACGTTGAACGAGATAATACCGGCAAGCTTCGT
GGATGATACGGCCTTCGCTTCTCTACCGACCGCTGTGTATATGCCTCAGA
CGAAACACGGAAGATGTGTGTGGCGTTGGGCGGAACTGCTTTACTAGATA
GCAGCGACCACGACACACGCGTTTCAAACGGCGATGCCGCTCTTCCCAGG
CTGACCCCGATGGGTGACCTAAGCGGAAGGCTAGCACCGGGGGGGGGAGA
CATGCCTTTCGACCGCAGATTGCCCGGGTGGCAAGAAGGGTGGTTCTGTG
CGATGTCCAAAGTTACAAAGGAAAATATCGCTCTGCAGTACTGCGAAACA
GAGGATGCAACGTAGTGAACCATAAAGAACGACAGCAGGACTCAAAACGT
ATATATATATAGTATACATACATAAATACATTTATTGCAACACTTGTACA
CACGTTGTGTACTTCAAACAGATGGAGGAGATGGCGGCTCTCCAGGCATC
GTTCAACAAGGAGGTAGCATCAAAAGGAAACATCGGCAACGCCACGGACG
TCAGGGAGATCCTGGCACCTTTTCTCAAGGACCAGCTCGACATGGCGGAG
GCCACGAGGGAGATGGTTAACAGGGTGAACGAGTTTAGAGGTAGCGTCGG
GGCGTCCGATGGGCTGGACGGCGTGCAGGAGCAGGGGAAGAGGGTGATCG
ACGACAAGGTCAAGGAGCTTCGGGTGAGTAGACTGGGTGATGCTGGCCGT
GCTGCACGCACTGTATCTACAGCGGCTTGCTGGTCGCCTCTGGCGCACGT
GTGCCATTGGTAAATTATTCTAGAGGGTATTGTAGACGCGTTCGCTTTTT
GTGTATTTGTTTTTTTGTTCTTTCCTCTGGTGCAACATCTCTTTCGGACA
TTCACGACCAGTCCCGATGTTCAACATGGGCTGTACATACACTAAACGGT
CGCCTAAAGTGTGAACTCCACGTCCTCGTGTTCTGTTAGGCCTCGTTGCC
CCCCGCTCGCCGAATCCGCCCACCGTTCTTTTTTTGGCGCCCTTTTGATT
CGGATTCGCGCGTGGTGAACACGCCCCTAACTCAATCTCAATGTCTGGGT
TGGTTTTTGTTTTTTTTCCGTGTGTCGCGCAGGAGATGCTAACGAAAGCT
ACCGTGGGGGATGGAACGGGCGGCGGGGACGTCGTCAAGATACACTCGGG
CTTCAAGAACGCCTACTCGAGCGTCAATCGGACGCTCGGCGCGGTCGTTT
CGTCCGCCGCTGACGGTAGACCAGAGGTGTGTGTGTGTGTTTTTATGTTT
TTAACATAGTGCTATTGCTATTGGGCTCTGTAGAGGACCGAAGAGAGGGC
AAGAGAGTCAATGCGCACGCGCTTGTGCTGATCGCCCGCTCTGCTGCTCT
GAGTATTGGTAAACTTTGTATATGGCAGGATTGGCACGTGTTCATCACGG
GGCACTCCCTCGGGGGGGCCCTCGCAACGCTGGCGACGCTTGACCATCGG
CGTCGCTACCCCACCGCGAAGGTCACCATGTACAACTTCGGCAGCCCGCG
CGTGGGCAACGGGTGAGCGACTTCTGTAGCAGGGATTGACTCTCATCTGT
GCGCGGTCGATCTGTTTGTGGTTTCTAGGGAGAACTGTTGTACAAGTACA
TTGGAGTGGAGAGGTGATGGCGCGGATTGGCAGAATATTTGAATGGATGC
CCGATTGATGCGTTGACAATCTTTGGATACAAAATGTGTGTCATGTCTGT
GGATAGATTCGTTGGCGCCTCTCTCCGAGCAAGCCTCCTCTTAGGGTCGC
GGTCCCTCTGCCGTTTGGCGGCACGCTTCATACGTCTTCCCCTACCTCCT
CATGTTGCCCGTATCCTCGTTGACCGGTGGCCCGTCTACGCACAAAGCCG
AGCACAAGCGTGCGGCGCCTCGTTCATATATTCCCCCATTCACTGTTGTA
GGAGCGAACACGTGAAATCGCCGTTGGGTTTTCTCGTCCGTGCCACATTG
TTCTTTTTTAACGTTCTTTGTTCTTTTGCGTGTTCTTCAAATTTGATTTG
CCACGCAATATAATGTCGACCCCTCAAATCCCCGCAAAAACAAACGCACC
ACACAAAAGGGCCTTCGCGCGGCTGTACGACAGCTTCGTTGGGGACAGCT
TCCGCGTGGTCAACAACATGGATGTCGTGGCGCGGATGCCGAGAGGCACG
ATGGGCGGCATCTCTCTCGAATACTGCCACGCGGGGCGCACGGTCATGGT
CGCCGAGGACCCTACGGAGCCTCCGTGGATACAAGGAGAGGTGAATTTTT
ACAGAGATACTACTTACGGCGAAATTCGGGCATGCCATTGTGTGGTCACG
GATTTGTTCCACGTCTTCGCAAATAGTTGTAAGCTTCCCTTCGGACAGCA
GTCAACGTGGACAATTTAGCATAGCTCTATGCTACATGCAGTTCATCCAA
TCTTTCAGTACGGACGTGTTTCAAGTTGCTGGAATCTCTTCATACGGCGA
CGGCCCCCTTGATTCGTTGCTGCTTTTGCAGCGGGGGCCACACAGGACCC
ACACCAGTTTTTCATCACGTGAGCGGCCGTCGCTGCCAAGCGTTGCATTG
TGCGGCGGCGGTGACTGCACGACGAACGGCCCGATACTTTTTGTGCGCGC
TGGTTCCGTGAGTACAAAGTACGGTGTAAGGAGCTGCGTCTTCTGATTCA
GACCAGGCACTCCAGGCTGTTACGAACACCTGTGATGGCGTGGAACGGAA
ATTTCTGACACCTGATTTCTCGCATTGGCGCCAGTCTCTCACGCTTCCGT
ATCGAGGTTGAACGCCGAGAATGAGCGATGTAACGGTTCGGTCCAGCAAA
ACGCTCAGTCTGAGCTTCCGCCAGCTGGGTGTGTCAGTCGCGGTTGGCAG
TGATGTTATTTCCAAGAAAATAACAGCGCTGGCTGCGGTGGGACCGGCGG
CACTGCACTGTACTTCCTTAATCTGAGAGAGTTCAAAATCTTCCGTCAAA
GAAACGGTAGTGAGACACTTCCCCCACCTGTATCCGTATTTTCTCTCCCT
TCTCCTCCGGTCTCACCGCGCGTTGTTCTGCAGTCAGCCGGTGGGTGTCC
GCTGGACGAGAGGGATATCGCGAAAGTACTCACGGAAGGGTCCACGGACT
TCTTCGACTTGGAAGTGAAGATCATGCAGTCGCTCTTCAGCGGGAAGGGT
ATCGACCATCACATGGAGAACAACTGTGAGTCGATTGCCTTTACGTAAGG
TGTTCATGGTGGGAAGTGTTTTTTTACTCTGTTGCCTTGATCCCTTGTTT
GGTCCGTTTCCGTTCATTCGCTATTCCCCGTGCTATCATATGTGCCTGAT
GTCACCGAACTCGATGGCTCCGTCGAGTCACTCCACCCGCCTCGGGTGAA
AAACATGATAGTTATCGCAGTACAGTGATACCTGATTTGGAGCAGTGCAC
GCGCACTCCATGTAGTTGGATGCTGATGACAAAATATATAGATACCACCT
GCACATGGTTAGCGGATGCGCTGATTAAAGAACAACCTTAAGGCATGGTC
GCTGCAGAAGAATCAGCCCAGGTATGTATCGGCAGCAGTATGTTGGAATG
GACGGTCTATTTTCCCGCCCCACCCCGCGCCCTTCCCTTTTGTCTATATC
CGTTTGGATACGACGTGGGTTAAACAAATGTGCACCCCCACCCACCACCT
CCTTCCCCCGACGTCCTATCCACTTGCCTTGCAAACCCCGGCGGTCCCTT
CTTCACTTCGTGTCGCCCCGGCTTTAGATTTTGCTGCGCTTGACAGCTTC
TACATTCCCGAGGATGCCAGCAATAAAGCTTAGACACGGGCTGCCTGTGG
AAATACCGACCGATACGCGAGCCTCTGCAGAGCATCTCCATACTGCTAGC
TTCTCCGAGGCACGTTGCAAAAGTTGGATGTAAAGCAGCCGTCGGCGTCA
TGATGAGGCAGAAGAACAACAGAGGGCACGGTAGTTGTAGTAGTAGACGA
AGACTGTGAACCCACGAGCACGGGCGTTGCGACTTTTGCTCGTGAGGTGG
GAGCTGCAATGTAGGAGAATGTATCGGTACCGAGAACGCCCATTTGTGCA
TGTTGGAGTTACAGTATCGCCATATAGTAGTCCACAATTTCGGCGATATC
TCTTGGTGCTTTTCAAGGTGGCAGGCGTCGCTCTATTTGGCGGTAGGAAG
CTTCGAGCAATGCAAAGCAGGCTTGAAGACGCTTCTCGTGCTGGAGCCCT
ATCATATATATATTAGGAAACGCTGTGTTTTATGAGGATCTGCAGCTTTG
GAGTGCTTTTAGGCGGGAGGCCCAGCGGTTTGTGGTTTCGGAGTACCAGT
GAGTTGTATTCAGCAGGGTGTGCGCAGGCGGTGAACGGAAAAATGTTATC
TTCGGGGTTTACAAAGAAAAGCGTGCAGCCATCTCGTTGAACGCCGAGGA
GTCTAACCATACAATCAAGGCAGGGTCGATCTACTGGTTTCGTAGGGATT
TTCGGGCTCGGCGTTGTGTATGCTCCGGCGTTCGTCAATACCCCCACTTT
GTCGACGGTACGTGGTAAACATACAATATTACATGATCACCAATTCGGAC
ATCACATCCGGAAGTACCAGGACGAGGGGTAAGGGTTTCCAAGCACCCCG
CTGTTGTGCTGATGTATTTCGGCTTCACACTTCCATCCCTTTTATGAACC
GCAGTAAGTGTGACTTTTACGTACTACACGACGTGCGATATTTTTGCTGA
TGATGTTGCTTTCTCCGAGTACTGTAGGTGCGATCTGAAACGCGGCTTCA
GCCGCTACGCGTTTTTCGTTTTTTCCTTCTTGCCAACGCTGGTTTTCGGG
CCGAGGAATTGTGTGGAATAGGTTTGAACTGGGACCACTTCCGTGCCTGG
TTTATGGTGTATAATGCATGGTTGTGTTTTCAAATTTCCACTGGGGTGGA
ATGGACTGTGATGGCCACCTCCACTCTAAGCCATTCAACTGAGGATACCG
CTCAACTGGGGACACCCGCTCGGTGCGCTATGTGAAAACGTGGGTTGGAC
AACACTGGCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig1204:3793..9452+

>mRNA_S-dermatodea_contig1204.1269.1 ID=mRNA_S-dermatodea_contig1204.1269.1|Name=mRNA_S-dermatodea_contig1204.1269.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1980bp|location=Sequence derived from alignment at S-dermatodea_contig1204:3793..9452+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCTGCTGTGGATGTTCCCGGTGGGGATATGGGGCTGGTAGATACGCT
GGATTGGGTGCAGCAGGTCGCCGCCGAAAAGATGGCTGCTGTGGATGTTC
CCGGTGGGGATATGGGGCTGGTAGATACGCTGGATTGGGTGCAGCAGGTC
GCCGCCGAAAAGATGGAGGAGATGGCGGCTCTCCAGGCATCGTTCAACAA
GGAGGTAGCATCAAAAGGAAACATCGGCAACGCCACGGACGTCAGGGAGA
TCCTGGCACCTTTTCTCAAGGACCAGCTCGACATGGCGGAGGCCACGAGG
GAGATGGTTAACAGGGTGAACGAGTTTAGAGGTAGCGTCGGGGCGTCCGA
TGGGCTGGACGGCGTGCAGGAGCAGGGGAAGAGGGTGATCGACGACAAGG
TCAAGGAGCTTCGGATGGAGGAGATGGCGGCTCTCCAGGCATCGTTCAAC
AAGGAGGTAGCATCAAAAGGAAACATCGGCAACGCCACGGACGTCAGGGA
GATCCTGGCACCTTTTCTCAAGGACCAGCTCGACATGGCGGAGGCCACGA
GGGAGATGGTTAACAGGGTGAACGAGTTTAGAGGTAGCGTCGGGGCGTCC
GATGGGCTGGACGGCGTGCAGGAGCAGGGGAAGAGGGTGATCGACGACAA
GGTCAAGGAGCTTCGGGAGATGCTAACGAAAGCTACCGTGGGGGATGGAA
CGGGCGGCGGGGACGTCGTCAAGATACACTCGGGCTTCAAGAACGCCTAC
TCGAGCGTCAATCGGACGCTCGGCGCGGTCGTTTCGTCCGCCGCTGACGG
TAGACCAGAGGAGATGCTAACGAAAGCTACCGTGGGGGATGGAACGGGCG
GCGGGGACGTCGTCAAGATACACTCGGGCTTCAAGAACGCCTACTCGAGC
GTCAATCGGACGCTCGGCGCGGTCGTTTCGTCCGCCGCTGACGGTAGACC
AGAGGATTGGCACGTGTTCATCACGGGGCACTCCCTCGGGGGGGCCCTCG
CAACGCTGGCGACGCTTGACCATCGGCGTCGCTACCCCACCGCGAAGGTC
ACCATGTACAACTTCGGCAGCCCGCGCGTGGGCAACGGGATTGGCACGTG
TTCATCACGGGGCACTCCCTCGGGGGGGCCCTCGCAACGCTGGCGACGCT
TGACCATCGGCGTCGCTACCCCACCGCGAAGGTCACCATGTACAACTTCG
GCAGCCCGCGCGTGGGCAACGGGGCCTTCGCGCGGCTGTACGACAGCTTC
GTTGGGGACAGCTTCCGCGTGGTCAACAACATGGATGTCGTGGCGCGGAT
GCCGAGAGGCACGATGGGCGGCATCTCTCTCGAATACTGCCACGCGGGGC
GCACGGTCATGGTCGCCGAGGACCCTACGGAGCCTCCGTGGATACAAGGA
GAGGGCCTTCGCGCGGCTGTACGACAGCTTCGTTGGGGACAGCTTCCGCG
TGGTCAACAACATGGATGTCGTGGCGCGGATGCCGAGAGGCACGATGGGC
GGCATCTCTCTCGAATACTGCCACGCGGGGCGCACGGTCATGGTCGCCGA
GGACCCTACGGAGCCTCCGTGGATACAAGGAGAGTCAGCCGGTGGGTGTC
CGCTGGACGAGAGGGATATCGCGAAAGTACTCACGGAAGGGTCCACGGAC
TTCTTCGACTTGGAAGTGAAGATCATGCAGTCGCTCTTCAGCGGGAAGGG
TATCGACCATCACATGGAGAACAACTTCAGCCGGTGGGTGTCCGCTGGAC
GAGAGGGATATCGCGAAAGTACTCACGGAAGGGTCCACGGACTTCTTCGA
CTTGGAAGTGAAGATCATGCAGTCGCTCTTCAGCGGGAAGGGTATCGACC
ATCACATGGAGAACAACTATTTTGCTGCGCTTGACAGCTTCTACATTCCC
GAGGATGCCAGCAATAAAGCTTAGATTTTGCTGCGCTTGACAGCTTCTAC
ATTCCCGAGGATGCCAGCAATAAAGCTTAG
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