mRNA_S-dermatodea_contig1202.1256.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1202.1256.1
Unique NamemRNA_S-dermatodea_contig1202.1256.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1202.1256.1 vs. uniprot
Match: D7G670_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G670_ECTSI)

HSP 1 Score: 179 bits (453), Expect = 3.710e-51
Identity = 145/313 (46.33%), Postives = 165/313 (52.72%), Query Frame = 1 
Query:    1 MMAMESSVLGCGSDDWSVDSDYAFQDFNDDGQPGPNPQ------------SASPERAHRVTAGA-----RNMGRSTARGGRGATNPEEEVEEEASNANVRAVTPRREEARSL-----PREDSVSEGKADAAGSA-RDEQQHPCAPGARPFGDPGSSTDSTHILRLEQRMFLKAAFQLLEERDRLFPAPIVFEQGDGGEGLAGDD----------------RDDKRRGGSGRGETADGTVDAGE-GRG----FQEH-----GQCTRIFKSGALRKATARSMGRLETTTWKTKYIEVTPGKFAYAD-GSSVLGKR 789
            M+A+ESSVLGCGSDDWSVDSDYAFQDF DD +     Q            S+SP R             + +  S     R  T    E  E A  A    +T    +A        P E  V   +  +A  A +D + HP     R FGDPGSS+DSTHILRLEQRMFLKAAFQLLEERDRLFPA I      G  G AG                  RD  RRGG   G    G V AG+ G G    FQ+H         RI KSG LRKATARS+GRLE TTWKTKY+E+TPG FAY+D G  V+GKR
Sbjct:    1 MIALESSVLGCGSDDWSVDSDYAFQDFADDVKHHQQQQARHEKSEQNLLQSSSPTRERSAVPNPGTPINKRVVGSLDDNSRAETTELHEHPEAAEGARADTLTAGGAQAXXXXXXXXPEEGEVGGSRRGSASEAGKDNRHHPVLSNTRLFGDPGSSSDSTHILRLEQRMFLKAAFQLLEERDRLFPASI------GSWGTAGGGWVXXXXXXXXXXXSNLRD--RRGGYVNG----GAVSAGKAGEGARFHFQQHEPNFYANRPRILKSGTLRKATARSVGRLEKTTWKTKYVELTPGSFAYSDNGPIVIGKR 301
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BLAST of mRNA_S-dermatodea_contig1202.1256.1 vs. uniprot
Match: A0A6H5KYB1_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYB1_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 2.590e-20
Identity = 67/136 (49.26%), Postives = 76/136 (55.88%), Query Frame = 1 
Query:  436 MFLKAAFQLLEERDRLFPAPIVFEQGDGGEGLAG-------------DDRDDKRRGGSGRGETADGTVDAGEGRGFQEH-----GQCTRIFKSGALRKATARSMGRLETTTWKTKYIEVTPGKFAYAD-GSSVLGK 786
            MFLKAAFQLLEERDRLFPA I    G  G    G              +  D+R G       + G    G    FQ+H         RI KSG LRKATARS+GRLE TTWKTKY+E+TPG FAY+D G  V+GK
Sbjct:    1 MFLKAAFQLLEERDRLFPASI----GSWGTAAGGWVPXXXXXXXXXXSNLRDQRGGYVNGAAVSAGKAGEGPRFHFQQHEPTFYANRPRILKSGTLRKATARSVGRLEKTTWKTKYVELTPGSFAYSDNGPIVIGK 132
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1202.1256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G670_ECTSI3.710e-5146.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYB1_9PHAE2.590e-2049.26PH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1202contigS-dermatodea_contig1202:9488..10893 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_009690.1
Exons2
Model size792
Cds size792
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924227.4828334-CDS-S-dermatodea_contig1202:9487..98321622924227.4828334-CDS-S-dermatodea_contig1202:9487..9832Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1202 9488..9832 -
1694079108.583892-CDS-S-dermatodea_contig1202:9487..98321694079108.583892-CDS-S-dermatodea_contig1202:9487..9832Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1202 9488..9832 -
1622924227.4915066-CDS-S-dermatodea_contig1202:10446..108931622924227.4915066-CDS-S-dermatodea_contig1202:10446..10893Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1202 10447..10893 -
1694079108.5919213-CDS-S-dermatodea_contig1202:10446..108931694079108.5919213-CDS-S-dermatodea_contig1202:10446..10893Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1202 10447..10893 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1202.1256.1prot_S-dermatodea_contig1202.1256.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1202 9488..10893 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1202.1256.1

>prot_S-dermatodea_contig1202.1256.1 ID=prot_S-dermatodea_contig1202.1256.1|Name=mRNA_S-dermatodea_contig1202.1256.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=264bp
MMAMESSVLGCGSDDWSVDSDYAFQDFNDDGQPGPNPQSASPERAHRVTA
GARNMGRSTARGGRGATNPEEEVEEEASNANVRAVTPRREEARSLPREDS
VSEGKADAAGSARDEQQHPCAPGARPFGDPGSSTDSTHILRLEQRMFLKA
AFQLLEERDRLFPAPIVFEQGDGGEGLAGDDRDDKRRGGSGRGETADGTV
DAGEGRGFQEHGQCTRIFKSGALRKATARSMGRLETTTWKTKYIEVTPGK
FAYADGSSVLGKR*
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mRNA from alignment at S-dermatodea_contig1202:9488..10893-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1202.1256.1 ID=mRNA_S-dermatodea_contig1202.1256.1|Name=mRNA_S-dermatodea_contig1202.1256.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1406bp|location=Sequence derived from alignment at S-dermatodea_contig1202:9488..10893- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATGGCCATGGAGAGCTCTGTCTTAGGATGCGGCAGCGACGACTGGTC
GGTCGACAGCGACTACGCCTTCCAAGACTTCAATGACGACGGCCAGCCAG
GACCGAACCCGCAGTCTGCGTCGCCAGAGCGGGCACACCGGGTTACTGCA
GGGGCCCGCAACATGGGCAGATCAACCGCAAGAGGAGGGAGAGGCGCTAC
GAACCCAGAAGAAGAGGTCGAGGAGGAAGCGTCCAACGCCAACGTTCGGG
CAGTGACACCGCGACGGGAAGAGGCGCGATCGTTGCCTCGAGAGGATTCG
GTAAGCGAGGGGAAAGCGGATGCGGCGGGGTCGGCAAGAGACGAGCAGCA
GCACCCCTGTGCGCCGGGAGCTCGGCCGTTCGGAGATCCTGGCAGCAGCA
CGGATAGCACACACATTTTGAGGTTGGAGCAGCGCATGTTTCTCAAGGTG
AGACCACCACACTCACTCGTGATTTTTGCGCACTCGGCATGATAGTTTGT
TTGTGAAAAGCCCCTGCAAGGTTTACAGCTGTGGCGCGGATTTTAGCAAA
AACAAAGTTAGGTGTTGAGCCGAGAGCAAACCTGTTACAATAAATACTCG
GTAACGCAACCCGGGTACCCTGTCTCGCGATGAGTTATGGAGCGTACACT
TTCTGTGTTCAGTTTCTTCATTATAGTACAGTAAAAATAAGTCCATCCTC
TCGATACGCCTCAGAGACATTTTTACGGCTGACGGGGCGAGTTTCGTGAA
TGACGGTGTGTCCCGGGGGGGTCTATGATTCTGGAATCTTAATTTTTTTA
GGGGGGGGTGGCCTATTAAACTAGGTACTGGAAGTAGGGTGTTGATTGCT
TCTGTTGTTTTCGGACTCTTCGTGCCTGGCCATACCGAGGTCTGCCTTAC
TTACCTTCGCGTTTATCTAGTTTACACCTGCCTATCTTCCGAGTCTGCCC
ATTGTCGGAGGGAAAAAATTGTATACCCCTCAGGCCGTACACCAACCTAC
CAACCCGGCCCGGCCCCTTGCCCCACAAACGCATAAAAAACGCTCTGCGT
CCCACCCCCAGGCCGCGTTTCAGCTCCTAGAGGAGCGGGATCGCCTCTTT
CCTGCACCCATTGTCTTCGAGCAAGGCGACGGCGGGGAAGGATTGGCCGG
CGATGACCGTGACGATAAACGACGCGGCGGGAGCGGCCGCGGAGAAACTG
CCGACGGCACCGTCGACGCCGGCGAGGGAAGGGGGTTTCAGGAACATGGG
CAATGTACGCGAATTTTTAAGTCCGGGGCGCTCCGCAAGGCGACGGCGAG
GAGCATGGGCAGGCTGGAAACAACTACTTGGAAGACGAAGTACATAGAGG
TTACGCCCGGGAAGTTTGCGTACGCCGATGGGTCCTCTGTTCTAGGGAAA
AGGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig1202:9488..10893-

>mRNA_S-dermatodea_contig1202.1256.1 ID=mRNA_S-dermatodea_contig1202.1256.1|Name=mRNA_S-dermatodea_contig1202.1256.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1584bp|location=Sequence derived from alignment at S-dermatodea_contig1202:9488..10893- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATGGCCATGGAGAGCTCTGTCTTAGGATGCGGCAGCGACGACTGGTC
GGTCGACAGCGACTACGCCTTCCAAGACTTCAATGACGACGGCCAGCCAG
GACCGAACCCGCAGTCTGCGTCGCCAGAGCGGGCACACCGGGTTACTGCA
GGGGCCCGCAACATGGGCAGATCAACCGCAAGAGGAGGGAGAGGCGCTAC
GAACCCAGAAGAAGAGGTCGAGGAGGAAGCGTCCAACGCCAACGTTCGGG
CAGTGACACCGCGACGGGAAGAGGCGCGATCGTTGCCTCGAGAGGATTCG
GTAAGCGAGGGGAAAGCGGATGCGGCGGGGTCGGCAAGAGACGAGCAGCA
GCACCCCTGTGCGCCGGGAGCTCGGCCGTTCGGAGATCCTGGCAGCAGCA
CGGATAGCACACACATTTTGAGGTTGGAGCAGCGCATGTTTCTCAAGATG
ATGGCCATGGAGAGCTCTGTCTTAGGATGCGGCAGCGACGACTGGTCGGT
CGACAGCGACTACGCCTTCCAAGACTTCAATGACGACGGCCAGCCAGGAC
CGAACCCGCAGTCTGCGTCGCCAGAGCGGGCACACCGGGTTACTGCAGGG
GCCCGCAACATGGGCAGATCAACCGCAAGAGGAGGGAGAGGCGCTACGAA
CCCAGAAGAAGAGGTCGAGGAGGAAGCGTCCAACGCCAACGTTCGGGCAG
TGACACCGCGACGGGAAGAGGCGCGATCGTTGCCTCGAGAGGATTCGGTA
AGCGAGGGGAAAGCGGATGCGGCGGGGTCGGCAAGAGACGAGCAGCAGCA
CCCCTGTGCGCCGGGAGCTCGGCCGTTCGGAGATCCTGGCAGCAGCACGG
ATAGCACACACATTTTGAGGTTGGAGCAGCGCATGTTTCTCAAGGCCGCG
TTTCAGCTCCTAGAGGAGCGGGATCGCCTCTTTCCTGCACCCATTGTCTT
CGAGCAAGGCGACGGCGGGGAAGGATTGGCCGGCGATGACCGTGACGATA
AACGACGCGGCGGGAGCGGCCGCGGAGAAACTGCCGACGGCACCGTCGAC
GCCGGCGAGGGAAGGGGGTTTCAGGAACATGGGCAATGTACGCGAATTTT
TAAGTCCGGGGCGCTCCGCAAGGCGACGGCGAGGAGCATGGGCAGGCTGG
AAACAACTACTTGGAAGACGAAGTACATAGAGGTTACGCCCGGGAAGTTT
GCGTACGCCGATGGGTCCTCTGTTCTAGGGAAAAGGTGAGCCGCGTTTCA
GCTCCTAGAGGAGCGGGATCGCCTCTTTCCTGCACCCATTGTCTTCGAGC
AAGGCGACGGCGGGGAAGGATTGGCCGGCGATGACCGTGACGATAAACGA
CGCGGCGGGAGCGGCCGCGGAGAAACTGCCGACGGCACCGTCGACGCCGG
CGAGGGAAGGGGGTTTCAGGAACATGGGCAATGTACGCGAATTTTTAAGT
CCGGGGCGCTCCGCAAGGCGACGGCGAGGAGCATGGGCAGGCTGGAAACA
ACTACTTGGAAGACGAAGTACATAGAGGTTACGCCCGGGAAGTTTGCGTA
CGCCGATGGGTCCTCTGTTCTAGGGAAAAGGTGA
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