mRNA_S-dermatodea_contig1202.1255.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1202.1255.1
Unique NamemRNA_S-dermatodea_contig1202.1255.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig1202.1255.1 vs. uniprot
Match: D7G7X5_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7X5_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 4.930e-32
Identity = 78/132 (59.09%), Postives = 82/132 (62.12%), Query Frame = 1
Query:    1 ELAQLWKDMKRDTVSINGRVLKGERGPEAIVGALTRCILAQVGRRVCSMECGCNCFYRSHTPYHSVLPPLSSMVTALSCCLRTNQAGRLPASESLSKLSEAQSLLAARDVLLACDRTTSGGDTYLVVRKIPR 396
            ELAQLWKDMKRDTVSINGRV+ GERGPE I+GALTRCILAQ                                            AGRL AS+SLSKLSEAQSLLAARDVLLACDRTTSGGDTYLVV  + R
Sbjct:  166 ELAQLWKDMKRDTVSINGRVMTGERGPEGIIGALTRCILAQ--------------------------------------------AGRLSASDSLSKLSEAQSLLAARDVLLACDRTTSGGDTYLVVDNLCR 253          
BLAST of mRNA_S-dermatodea_contig1202.1255.1 vs. uniprot
Match: I2CPS4_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPS4_NANGC)

HSP 1 Score: 81.6 bits (200), Expect = 4.590e-16
Identity = 61/157 (38.85%), Postives = 81/157 (51.59%), Query Frame = 1
Query:    1 ELAQLWKDMKRDTVSINGRVLKGERGPEAIVGALTRCILAQVGRRVCSMECGCNCFYRSHTPYHSVLPP----------LSSMVTALSCCLRTNQAGRLPASESLSKLSEAQSLLAARDVLLACDRTTSGGDTYLVVRKIPRPNTKLMQCCAISSNS 441
            EL QLWKDM RD V ING+++ GE GPEAI+GAL R +     +     E   +    + TP  S              LSS V+ L+         R+P+S SL  L+E Q +    ++LLAC+RT SGGDTY  V  + R N  L   C  SS++
Sbjct:   10 ELTQLWKDMMRDKVCINGQIIHGEYGPEAILGALARVLTTLALQAKAHEETSKSLGLEAATPSTSGSARADKKQPDQHRLSSSVSQLALA-------RIPSS-SLGSLNEVQIVAHTMEILLACNRTQSGGDTYYCVEYLFR-NPNLAVVCPYSSHA 157          
BLAST of mRNA_S-dermatodea_contig1202.1255.1 vs. uniprot
Match: A0A4D9D8I0_9STRA (PH domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D8I0_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 2.830e-14
Identity = 59/157 (37.58%), Postives = 78/157 (49.68%), Query Frame = 1
Query:    1 ELAQLWKDMKRDTVSINGRVLKGERGPEAIVGALTRCILAQVGRRVCSMECGCNCFYRSHTPYHSVLPP----------LSSMVTALSCCLRTNQAGRLPASESLSKLSEAQSLLAARDVLLACDRTTSGGDTYLVVRKIPRPNTKLMQCCAISSNS 441
            EL QLWKDM RD V ING+++ GE GPEAI+GAL R +     +     E   +    + TP  S              LSS V+ L+    +        S SL  L+E Q +    ++LLAC+RT SGGDTY  V  + R N  L   C  SS++
Sbjct:  462 ELTQLWKDMMRDKVCINGQIIHGEYGPEAILGALARVLTTLALQAKAHEETSKSLGLEAATPSTSGSARADKKQPDQHRLSSSVSQLALARFS--------SSSLGSLNEVQIVAHTMEILLACNRTQSGGDTYYCVEYLFR-NPNLAVVCPYSSHA 609          
BLAST of mRNA_S-dermatodea_contig1202.1255.1 vs. uniprot
Match: A0A7S4HSG3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HSG3_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 8.290e-12
Identity = 56/142 (39.44%), Postives = 71/142 (50.00%), Query Frame = 1
Query:    4 LAQLWKDMKRDTVSINGRVLKGE--RGPEAIVGALTRCILAQVGRRVCSMECGCNCFYRSHTPYHSVLPPLSSMVTALSCCLRTNQAGRLPASESLSKLSEAQSLLAARDVLLACDRTTSGGDTYLVVRKIPRPNTKLMQCC 423
            +AQLWKDM RD+V+ING +LKG+   GPE IVGALTR I+                   SH          ++  TA     R   A           ++EAQS+  ARDVLLAC RT SGGD+Y  V  +   N+ L+  C
Sbjct:  110 IAQLWKDMSRDSVTINGELLKGDSPHGPECIVGALTRSIM-------------------SHDRS-------AAQNTAAPSSYRRKFA-----------INEAQSVSYARDVLLACSRTRSGGDSYYCVDNLCS-NSDLVVLC 213          
BLAST of mRNA_S-dermatodea_contig1202.1255.1 vs. uniprot
Match: A0A7S2U7T9_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U7T9_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 4.520e-11
Identity = 51/148 (34.46%), Postives = 70/148 (47.30%), Query Frame = 1
Query:    4 LAQLWKDMKRDTVSINGRVLKGE--RGPEAIVGALTRCILAQVGRRVCSMECGCNCFYRSHTPYHSVLPPLSSMVTALSCCLRTNQAGRLPASESLSKLSEAQSLLAARDVLLACDRTTSGGDTYLVVRKIPRPNTKLMQCCAISSNS 441
            + QLWKDM RD+VSING++ KG+   GPE I+GAL RCI+ +V R       G                                            +++EAQ+L  ARDVLLAC+RT SGGD+Y     +   N+ L+  C  S+ +
Sbjct:  234 MKQLWKDMLRDSVSINGKIYKGDDPHGPERIMGALARCIM-RVDRSTEQAHIG-----------------------------------------DKHRITEAQALSYARDVLLACNRTRSGGDSYYCFDTLCN-NSHLVALCPSSTEA 338          
BLAST of mRNA_S-dermatodea_contig1202.1255.1 vs. uniprot
Match: K0TJJ1_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TJJ1_THAOC)

HSP 1 Score: 65.1 bits (157), Expect = 1.750e-9
Identity = 45/142 (31.69%), Postives = 64/142 (45.07%), Query Frame = 1
Query:    1 ELAQLWKDMKRDTVSINGRVLKGERGPEAIVGALTRCILAQVGRRVCSMECGCNCFYRSHTPYHSVLPPLSSMVTALSCCLRTNQAGRLPASESLSKLSEAQSLLAARDVLLACDRTTSGGDTYLVVRKIPRPNTKLMQCCA 426
            +LAQ+WKD++RD V +NGRVL GE  PE I+G+L   IL++                     YH                               + ++E+Q++  ARDVLLACDRT S GD+YL    +      ++ C A
Sbjct:  251 DLAQMWKDLRRDFVDVNGRVLSGEPFPEPIMGSLALEILSR---------------------YHG------------------------------NDVTESQAVSCARDVLLACDRTKSSGDSYLCAENLCLNRDMVVLCPA 341          
BLAST of mRNA_S-dermatodea_contig1202.1255.1 vs. uniprot
Match: A0A7S1FMB8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FMB8_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.620e-8
Identity = 45/127 (35.43%), Postives = 59/127 (46.46%), Query Frame = 1
Query:    4 LAQLWKDMKRDTVSINGRVLKGER-GPEAIVGALTRCILAQVGRRVCSMECGCNCFYRSHTPYHSVLPPLSSMVTALSCCLRTNQAGRLPASESLSKLSEAQSLLAARDVLLACDRTTSGGDTYLVV 381
            ++QLWKD+KRDTVSING V++G+  GPE I G+LT                                       TA+  C   N+    P       +SE Q++  ARD+LLA +RT SGGD Y  V
Sbjct:  632 ISQLWKDLKRDTVSINGHVIRGDTDGPERIFGSLT---------------------------------------TAILHCNVKNEQSNKPG------ISEVQAISFARDILLAGNRTRSGGDAYYCV 713          
BLAST of mRNA_S-dermatodea_contig1202.1255.1 vs. uniprot
Match: A0A6U3S3W6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3S3W6_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 5.460e-8
Identity = 42/128 (32.81%), Postives = 64/128 (50.00%), Query Frame = 1
Query:    4 LAQLWKDMKRDTVSINGRVLKGE--RGPEAIVGALTRCILAQVGRRVCSMECGCNCFYRSHTPYHSVLPPLSSMVTALSCCLRTNQAGRLPASESLSKLSEAQSLLAARDVLLACDRTTSGGDTYLVV 381
            ++QLWKDM RD+VSING +  G+   GPE I+G LTRCI+      + +++                    S+++                      +++E+ +L  ARDVLL+C+RT SGGD+Y  V
Sbjct:  260 ISQLWKDMLRDSVSINGDLFAGDSGHGPEQIIGELTRCIMKFDRMSLRNVD--------------------SNVMKKF-------------------RITESMALSYARDVLLSCNRTRSGGDSYYCV 348          
BLAST of mRNA_S-dermatodea_contig1202.1255.1 vs. uniprot
Match: B8C5V8_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C5V8_THAPS)

HSP 1 Score: 60.1 bits (144), Expect = 1.020e-7
Identity = 45/144 (31.25%), Postives = 64/144 (44.44%), Query Frame = 1
Query:   10 QLWKDMKRDTVSINGRVLKGE--RGPEAIVGALTRCILAQVGRRVCSMECGCNCFYRSHTPYHSVLPPLSSMVTALSCCLRTNQAGRLPASESLSKLSEAQSLLAARDVLLACDRTTSGGDTYLVVRKIPRPNTKLMQCCAISS 435
            QLWKD+ RD+V ING+V+ GE   GP+ I+G LT+ I+                    H  Y+S      S +T                        E Q++  ARD++LA DRT SGGD+Y  +  +   N  L+  C  S+
Sbjct:  361 QLWKDLLRDSVEINGQVISGESFHGPDRIIGNLTQLII-------------------HHNQYNSCHDGKQSSIT------------------------EVQAVSYARDIMLATDRTRSGGDSYYCIENLCL-NRDLVVICPTST 460          
BLAST of mRNA_S-dermatodea_contig1202.1255.1 vs. uniprot
Match: A0A7S1ZZ15_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZZ15_TRICV)

HSP 1 Score: 58.2 bits (139), Expect = 1.190e-7
Identity = 43/128 (33.59%), Postives = 61/128 (47.66%), Query Frame = 1
Query:    4 LAQLWKDMKRDTVSINGRVLKGE--RGPEAIVGALTRCILAQVGRRVCSMECGCNCFYRSHTPYHSVLPPLSSMVTALSCCLRTNQAGRLPASESLSKLSEAQSLLAARDVLLACDRTTSGGDTYLVV 381
            + QL+KDM+RD+V ING + KG+   GPE I+GAL+R I+        +++     F R                                       ++EAQ++  ARDVLLAC+RT SGGD+Y  V
Sbjct:   43 VTQLFKDMQRDSVIINGELYKGDSGHGPERIIGALSRSIIKHDRTAAQNIQAAA-AFKRKFG------------------------------------ITEAQAISYARDVLLACNRTRSGGDSYFCV 133          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1202.1255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7G7X5_ECTSI4.930e-3259.09PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
I2CPS4_NANGC4.590e-1638.85Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
A0A4D9D8I0_9STRA2.830e-1437.58PH domain-containing protein n=2 Tax=Monodopsidace... [more]
A0A7S4HSG3_9STRA8.290e-1239.44Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S2U7T9_9STRA4.520e-1134.46Hypothetical protein n=1 Tax=Attheya septentrional... [more]
K0TJJ1_THAOC1.750e-931.69Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S1FMB8_9STRA1.620e-835.43Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A6U3S3W6_9STRA5.460e-832.81Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
B8C5V8_THAPS1.020e-731.25Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S1ZZ15_TRICV1.190e-733.59Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1202contigS-dermatodea_contig1202:5092..6028 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.8
Seed ortholog evalue3.3e-23
Seed eggNOG ortholog2880.D7G7X5
EggNOG OGs2DN4Z@1,2S66D@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_010540.1
Exons2
Model size441
Cds size417
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1202.1255.1prot_S-dermatodea_contig1202.1255.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1202 5092..6004 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924227.4342792-CDS-S-dermatodea_contig1202:5091..53551622924227.4342792-CDS-S-dermatodea_contig1202:5091..5355Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1202 5092..5355 -
1694079108.54815-CDS-S-dermatodea_contig1202:5091..53551694079108.54815-CDS-S-dermatodea_contig1202:5091..5355Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1202 5092..5355 -
1622924227.445257-CDS-S-dermatodea_contig1202:5851..60041622924227.445257-CDS-S-dermatodea_contig1202:5851..6004Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1202 5852..6004 -
1694079108.5625577-CDS-S-dermatodea_contig1202:5851..60041694079108.5625577-CDS-S-dermatodea_contig1202:5851..6004Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1202 5852..6004 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924227.458171-UTR-S-dermatodea_contig1202:6004..60281622924227.458171-UTR-S-dermatodea_contig1202:6004..6028Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1202 6005..6028 -
1694079108.5744839-UTR-S-dermatodea_contig1202:6004..60281694079108.5744839-UTR-S-dermatodea_contig1202:6004..6028Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1202 6005..6028 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1202.1255.1

>prot_S-dermatodea_contig1202.1255.1 ID=prot_S-dermatodea_contig1202.1255.1|Name=mRNA_S-dermatodea_contig1202.1255.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=139bp
MKRDTVSINGRVLKGERGPEAIVGALTRCILAQVGRRVCSMECGCNCFYR
SHTPYHSVLPPLSSMVTALSCCLRTNQAGRLPASESLSKLSEAQSLLAAR
DVLLACDRTTSGGDTYLVVRKIPRPNTKLMQCCAISSNS
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mRNA from alignment at S-dermatodea_contig1202:5092..6028-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1202.1255.1 ID=mRNA_S-dermatodea_contig1202.1255.1|Name=mRNA_S-dermatodea_contig1202.1255.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=937bp|location=Sequence derived from alignment at S-dermatodea_contig1202:5092..6028- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGCTGGCGCAGCTGTGGAAGGACATGAAACGAGACACGGTGTCTATTAA CGGGAGGGTGCTAAAAGGAGAAAGGGGGCCGGAGGCCATCGTCGGAGCGT TGACGAGGTGTATCCTCGCGCAGGTGGGACGGCGTGTCTGCAGCATGGAG TGTGGTTGCAATTGTTTTTATAGATCGGTCAGATAGAAGCCAGATCGCCT AGAGTGCGCGTTGTATCTACACTATAATATTTGAAATTCACCTCCGGGGT TTGTTTTCCTCAGGTATTCCTGTGCTCTGCATGTCAGCTGGCGTTGAATA CCTGCGTTGCCGTGTCGTCTGTTGTGGTGAAGTCGCTTTATGGTGCTGAT GCTTGATCCTTCCTAGTTTCGTTTCGTCTCGAGCCCATAGTATGTCGTGA AGATTATCGCCGACTAAACACATGCCACAATCTGTTGTACCTCTTTCGTC CATCGATACCTGCCTTGTGGTACTGATCGGTGCGCGTGTCAGATCTGGTG CTTGTCGCATCAGACACATCCCCGATGTACACGGCTGTTGCAAAGTTAAA ACTTGGATAACCGACCAGTCACCTCGTCATCGTCGCCATTTGGTACAAGC CTCTGTCGGTGTACGCGGAAATATTAAGGGTCCTCACCGATACCCGCCGG CCAAACTCAGCGTCGAACTCTAGCATACCCCGTATCACAGCGTCCTACCA CCGCTCTCCTCAATGGTCACCGCTCTTTCGTGTTGCCTACGAACGAATCA GGCGGGGAGGCTACCGGCGTCGGAATCCTTGTCAAAGCTATCGGAGGCCC AGAGCCTCTTGGCGGCGAGGGACGTACTTCTCGCGTGTGACCGCACGACC TCTGGCGGAGACACGTACCTCGTGGTAAGAAAAATACCACGTCCCAACAC CAAACTGATGCAATGTTGTGCCATCTCTTCTAACTCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig1202:5092..6028-

>mRNA_S-dermatodea_contig1202.1255.1 ID=mRNA_S-dermatodea_contig1202.1255.1|Name=mRNA_S-dermatodea_contig1202.1255.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at S-dermatodea_contig1202:5092..6028- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAACGAGACACGGTGTCTATTAACGGGAGGGTGCTAAAAGGAGAAAG
GGGGCCGGAGGCCATCGTCGGAGCGTTGACGAGGTGTATCCTCGCGCAGG
TGGGACGGCGTGTCTGCAGCATGGAGTGTGGTTGCAATTGTTTTTATAGA
TCGATGAAACGAGACACGGTGTCTATTAACGGGAGGGTGCTAAAAGGAGA
AAGGGGGCCGGAGGCCATCGTCGGAGCGTTGACGAGGTGTATCCTCGCGC
AGGTGGGACGGCGTGTCTGCAGCATGGAGTGTGGTTGCAATTGTTTTTAT
AGATCGCATACCCCGTATCACAGCGTCCTACCACCGCTCTCCTCAATGGT
CACCGCTCTTTCGTGTTGCCTACGAACGAATCAGGCGGGGAGGCTACCGG
CGTCGGAATCCTTGTCAAAGCTATCGGAGGCCCAGAGCCTCTTGGCGGCG
AGGGACGTACTTCTCGCGTGTGACCGCACGACCTCTGGCGGAGACACGTA
CCTCGTGGTAAGAAAAATACCACGTCCCAACACCAAACTGATGCAATGTT
GTGCCATCTCTTCTAACTCCCATACCCCGTATCACAGCGTCCTACCACCG
CTCTCCTCAATGGTCACCGCTCTTTCGTGTTGCCTACGAACGAATCAGGC
GGGGAGGCTACCGGCGTCGGAATCCTTGTCAAAGCTATCGGAGGCCCAGA
GCCTCTTGGCGGCGAGGGACGTACTTCTCGCGTGTGACCGCACGACCTCT
GGCGGAGACACGTACCTCGTGGTAAGAAAAATACCACGTCCCAACACCAA
ACTGATGCAATGTTGTGCCATCTCTTCTAACTCC
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