mRNA_S-dermatodea_contig1202.1255.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig1202.1255.1 vs. uniprot
Match: D7G7X5_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7X5_ECTSI) HSP 1 Score: 129 bits (325), Expect = 4.930e-32 Identity = 78/132 (59.09%), Postives = 82/132 (62.12%), Query Frame = 1
Query: 1 ELAQLWKDMKRDTVSINGRVLKGERGPEAIVGALTRCILAQVGRRVCSMECGCNCFYRSHTPYHSVLPPLSSMVTALSCCLRTNQAGRLPASESLSKLSEAQSLLAARDVLLACDRTTSGGDTYLVVRKIPR 396
ELAQLWKDMKRDTVSINGRV+ GERGPE I+GALTRCILAQ AGRL AS+SLSKLSEAQSLLAARDVLLACDRTTSGGDTYLVV + R
Sbjct: 166 ELAQLWKDMKRDTVSINGRVMTGERGPEGIIGALTRCILAQ--------------------------------------------AGRLSASDSLSKLSEAQSLLAARDVLLACDRTTSGGDTYLVVDNLCR 253
BLAST of mRNA_S-dermatodea_contig1202.1255.1 vs. uniprot
Match: I2CPS4_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPS4_NANGC) HSP 1 Score: 81.6 bits (200), Expect = 4.590e-16 Identity = 61/157 (38.85%), Postives = 81/157 (51.59%), Query Frame = 1
Query: 1 ELAQLWKDMKRDTVSINGRVLKGERGPEAIVGALTRCILAQVGRRVCSMECGCNCFYRSHTPYHSVLPP----------LSSMVTALSCCLRTNQAGRLPASESLSKLSEAQSLLAARDVLLACDRTTSGGDTYLVVRKIPRPNTKLMQCCAISSNS 441
EL QLWKDM RD V ING+++ GE GPEAI+GAL R + + E + + TP S LSS V+ L+ R+P+S SL L+E Q + ++LLAC+RT SGGDTY V + R N L C SS++
Sbjct: 10 ELTQLWKDMMRDKVCINGQIIHGEYGPEAILGALARVLTTLALQAKAHEETSKSLGLEAATPSTSGSARADKKQPDQHRLSSSVSQLALA-------RIPSS-SLGSLNEVQIVAHTMEILLACNRTQSGGDTYYCVEYLFR-NPNLAVVCPYSSHA 157
BLAST of mRNA_S-dermatodea_contig1202.1255.1 vs. uniprot
Match: A0A4D9D8I0_9STRA (PH domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D8I0_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 2.830e-14 Identity = 59/157 (37.58%), Postives = 78/157 (49.68%), Query Frame = 1
Query: 1 ELAQLWKDMKRDTVSINGRVLKGERGPEAIVGALTRCILAQVGRRVCSMECGCNCFYRSHTPYHSVLPP----------LSSMVTALSCCLRTNQAGRLPASESLSKLSEAQSLLAARDVLLACDRTTSGGDTYLVVRKIPRPNTKLMQCCAISSNS 441
EL QLWKDM RD V ING+++ GE GPEAI+GAL R + + E + + TP S LSS V+ L+ + S SL L+E Q + ++LLAC+RT SGGDTY V + R N L C SS++
Sbjct: 462 ELTQLWKDMMRDKVCINGQIIHGEYGPEAILGALARVLTTLALQAKAHEETSKSLGLEAATPSTSGSARADKKQPDQHRLSSSVSQLALARFS--------SSSLGSLNEVQIVAHTMEILLACNRTQSGGDTYYCVEYLFR-NPNLAVVCPYSSHA 609
BLAST of mRNA_S-dermatodea_contig1202.1255.1 vs. uniprot
Match: A0A7S4HSG3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HSG3_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 8.290e-12 Identity = 56/142 (39.44%), Postives = 71/142 (50.00%), Query Frame = 1
Query: 4 LAQLWKDMKRDTVSINGRVLKGE--RGPEAIVGALTRCILAQVGRRVCSMECGCNCFYRSHTPYHSVLPPLSSMVTALSCCLRTNQAGRLPASESLSKLSEAQSLLAARDVLLACDRTTSGGDTYLVVRKIPRPNTKLMQCC 423
+AQLWKDM RD+V+ING +LKG+ GPE IVGALTR I+ SH ++ TA R A ++EAQS+ ARDVLLAC RT SGGD+Y V + N+ L+ C
Sbjct: 110 IAQLWKDMSRDSVTINGELLKGDSPHGPECIVGALTRSIM-------------------SHDRS-------AAQNTAAPSSYRRKFA-----------INEAQSVSYARDVLLACSRTRSGGDSYYCVDNLCS-NSDLVVLC 213
BLAST of mRNA_S-dermatodea_contig1202.1255.1 vs. uniprot
Match: A0A7S2U7T9_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U7T9_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 4.520e-11 Identity = 51/148 (34.46%), Postives = 70/148 (47.30%), Query Frame = 1
Query: 4 LAQLWKDMKRDTVSINGRVLKGE--RGPEAIVGALTRCILAQVGRRVCSMECGCNCFYRSHTPYHSVLPPLSSMVTALSCCLRTNQAGRLPASESLSKLSEAQSLLAARDVLLACDRTTSGGDTYLVVRKIPRPNTKLMQCCAISSNS 441
+ QLWKDM RD+VSING++ KG+ GPE I+GAL RCI+ +V R G +++EAQ+L ARDVLLAC+RT SGGD+Y + N+ L+ C S+ +
Sbjct: 234 MKQLWKDMLRDSVSINGKIYKGDDPHGPERIMGALARCIM-RVDRSTEQAHIG-----------------------------------------DKHRITEAQALSYARDVLLACNRTRSGGDSYYCFDTLCN-NSHLVALCPSSTEA 338
BLAST of mRNA_S-dermatodea_contig1202.1255.1 vs. uniprot
Match: K0TJJ1_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TJJ1_THAOC) HSP 1 Score: 65.1 bits (157), Expect = 1.750e-9 Identity = 45/142 (31.69%), Postives = 64/142 (45.07%), Query Frame = 1
Query: 1 ELAQLWKDMKRDTVSINGRVLKGERGPEAIVGALTRCILAQVGRRVCSMECGCNCFYRSHTPYHSVLPPLSSMVTALSCCLRTNQAGRLPASESLSKLSEAQSLLAARDVLLACDRTTSGGDTYLVVRKIPRPNTKLMQCCA 426
+LAQ+WKD++RD V +NGRVL GE PE I+G+L IL++ YH + ++E+Q++ ARDVLLACDRT S GD+YL + ++ C A
Sbjct: 251 DLAQMWKDLRRDFVDVNGRVLSGEPFPEPIMGSLALEILSR---------------------YHG------------------------------NDVTESQAVSCARDVLLACDRTKSSGDSYLCAENLCLNRDMVVLCPA 341
BLAST of mRNA_S-dermatodea_contig1202.1255.1 vs. uniprot
Match: A0A7S1FMB8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FMB8_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 1.620e-8 Identity = 45/127 (35.43%), Postives = 59/127 (46.46%), Query Frame = 1
Query: 4 LAQLWKDMKRDTVSINGRVLKGER-GPEAIVGALTRCILAQVGRRVCSMECGCNCFYRSHTPYHSVLPPLSSMVTALSCCLRTNQAGRLPASESLSKLSEAQSLLAARDVLLACDRTTSGGDTYLVV 381
++QLWKD+KRDTVSING V++G+ GPE I G+LT TA+ C N+ P +SE Q++ ARD+LLA +RT SGGD Y V
Sbjct: 632 ISQLWKDLKRDTVSINGHVIRGDTDGPERIFGSLT---------------------------------------TAILHCNVKNEQSNKPG------ISEVQAISFARDILLAGNRTRSGGDAYYCV 713
BLAST of mRNA_S-dermatodea_contig1202.1255.1 vs. uniprot
Match: A0A6U3S3W6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3S3W6_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 5.460e-8 Identity = 42/128 (32.81%), Postives = 64/128 (50.00%), Query Frame = 1
Query: 4 LAQLWKDMKRDTVSINGRVLKGE--RGPEAIVGALTRCILAQVGRRVCSMECGCNCFYRSHTPYHSVLPPLSSMVTALSCCLRTNQAGRLPASESLSKLSEAQSLLAARDVLLACDRTTSGGDTYLVV 381
++QLWKDM RD+VSING + G+ GPE I+G LTRCI+ + +++ S+++ +++E+ +L ARDVLL+C+RT SGGD+Y V
Sbjct: 260 ISQLWKDMLRDSVSINGDLFAGDSGHGPEQIIGELTRCIMKFDRMSLRNVD--------------------SNVMKKF-------------------RITESMALSYARDVLLSCNRTRSGGDSYYCV 348
BLAST of mRNA_S-dermatodea_contig1202.1255.1 vs. uniprot
Match: B8C5V8_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C5V8_THAPS) HSP 1 Score: 60.1 bits (144), Expect = 1.020e-7 Identity = 45/144 (31.25%), Postives = 64/144 (44.44%), Query Frame = 1
Query: 10 QLWKDMKRDTVSINGRVLKGE--RGPEAIVGALTRCILAQVGRRVCSMECGCNCFYRSHTPYHSVLPPLSSMVTALSCCLRTNQAGRLPASESLSKLSEAQSLLAARDVLLACDRTTSGGDTYLVVRKIPRPNTKLMQCCAISS 435
QLWKD+ RD+V ING+V+ GE GP+ I+G LT+ I+ H Y+S S +T E Q++ ARD++LA DRT SGGD+Y + + N L+ C S+
Sbjct: 361 QLWKDLLRDSVEINGQVISGESFHGPDRIIGNLTQLII-------------------HHNQYNSCHDGKQSSIT------------------------EVQAVSYARDIMLATDRTRSGGDSYYCIENLCL-NRDLVVICPTST 460
BLAST of mRNA_S-dermatodea_contig1202.1255.1 vs. uniprot
Match: A0A7S1ZZ15_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZZ15_TRICV) HSP 1 Score: 58.2 bits (139), Expect = 1.190e-7 Identity = 43/128 (33.59%), Postives = 61/128 (47.66%), Query Frame = 1
Query: 4 LAQLWKDMKRDTVSINGRVLKGE--RGPEAIVGALTRCILAQVGRRVCSMECGCNCFYRSHTPYHSVLPPLSSMVTALSCCLRTNQAGRLPASESLSKLSEAQSLLAARDVLLACDRTTSGGDTYLVV 381
+ QL+KDM+RD+V ING + KG+ GPE I+GAL+R I+ +++ F R ++EAQ++ ARDVLLAC+RT SGGD+Y V
Sbjct: 43 VTQLFKDMQRDSVIINGELYKGDSGHGPERIIGALSRSIIKHDRTAAQNIQAAA-AFKRKFG------------------------------------ITEAQAISYARDVLLACNRTRSGGDSYFCV 133 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1202.1255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig1202.1255.1 >prot_S-dermatodea_contig1202.1255.1 ID=prot_S-dermatodea_contig1202.1255.1|Name=mRNA_S-dermatodea_contig1202.1255.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=139bp MKRDTVSINGRVLKGERGPEAIVGALTRCILAQVGRRVCSMECGCNCFYRback to top mRNA from alignment at S-dermatodea_contig1202:5092..6028- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig1202.1255.1 ID=mRNA_S-dermatodea_contig1202.1255.1|Name=mRNA_S-dermatodea_contig1202.1255.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=937bp|location=Sequence derived from alignment at S-dermatodea_contig1202:5092..6028- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig1202:5092..6028- >mRNA_S-dermatodea_contig1202.1255.1 ID=mRNA_S-dermatodea_contig1202.1255.1|Name=mRNA_S-dermatodea_contig1202.1255.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at S-dermatodea_contig1202:5092..6028- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |