mRNA_S-dermatodea_contig12015.1253.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12015.1253.1
Unique NamemRNA_S-dermatodea_contig12015.1253.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12015.1253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12015contigS-dermatodea_contig12015:5774..6476 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size703
Cds size408
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12015.1253.1prot_S-dermatodea_contig12015.1253.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12015 5873..6280 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924227.3058038-UTR-S-dermatodea_contig12015:5773..58721622924227.3058038-UTR-S-dermatodea_contig12015:5773..5872Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12015 5774..5872 +
1694079108.4646919-UTR-S-dermatodea_contig12015:5773..58721694079108.4646919-UTR-S-dermatodea_contig12015:5773..5872Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12015 5774..5872 +
1622924227.3260777-UTR-S-dermatodea_contig12015:6280..64761622924227.3260777-UTR-S-dermatodea_contig12015:6280..6476Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12015 6281..6476 +
1694079108.483453-UTR-S-dermatodea_contig12015:6280..64761694079108.483453-UTR-S-dermatodea_contig12015:6280..6476Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12015 6281..6476 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924227.318328-CDS-S-dermatodea_contig12015:5872..62801622924227.318328-CDS-S-dermatodea_contig12015:5872..6280Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12015 5873..6280 +
1694079108.4740555-CDS-S-dermatodea_contig12015:5872..62801694079108.4740555-CDS-S-dermatodea_contig12015:5872..6280Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12015 5873..6280 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12015.1253.1

>prot_S-dermatodea_contig12015.1253.1 ID=prot_S-dermatodea_contig12015.1253.1|Name=mRNA_S-dermatodea_contig12015.1253.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=136bp
MYDARGNHDNLLSAYPHTTPSSYNSTTISAHPSRQTSLWGGGGSGGGVLK
PKRFMRLAVEAIGHTRVLGRTEQCSHRIDRSYERWPIVPTHGGSAIHGTL
FYESTSVLAFFGPHTYCLPVLLQYCLRLARRGAGG*
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mRNA from alignment at S-dermatodea_contig12015:5774..6476+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12015.1253.1 ID=mRNA_S-dermatodea_contig12015.1253.1|Name=mRNA_S-dermatodea_contig12015.1253.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=703bp|location=Sequence derived from alignment at S-dermatodea_contig12015:5774..6476+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTGGGACGATTTAAGATCGATTCCCTCGTGTGACCACAGACGGTATTCAG
CCAACAAGCCTGGTCAAGTCCTACGTGAGCCACACACACACACCAGCACA
TGTATGATGCTCGAGGCAATCATGACAACCTTCTCTCTGCCTACCCACAC
ACCACCCCCTCCTCGTATAATTCCACTACCATTTCCGCGCACCCCAGCAG
ACAAACTTCTCTCTGGGGTGGGGGGGGGTCCGGGGGAGGCGTACTCAAGC
CCAAGCGTTTCATGCGTTTAGCTGTTGAGGCCATTGGCCACACGCGTGTC
CTAGGGAGGACGGAGCAGTGTTCCCACAGGATCGATCGATCGTATGAGAG
ATGGCCAATCGTTCCTACCCACGGTGGTAGCGCAATTCATGGTACCCTAT
TCTATGAATCTACTTCAGTTCTCGCCTTTTTCGGGCCACATACATACTGC
CTCCCGGTATTGCTACAATACTGCCTTCGTCTGGCTCGGAGGGGGGCGGG
GGGCTGACGAGATAAAACTTGGTGCGATCTCCGCATTTGATCCACCAAAC
AAAATCCATAGCTCGGAGGGCACAAAACAGCGCGTCTTGGTCACGCCGTC
TTGTGCTTGTCTCCGTCAGAATTGGGCCCGGGGTTCACCATCGCCCGAAC
ACCTAGCAGCCCTAGGCACAGCTTGAACAGCTTGCACAGCGGGTCCTCGT
ACT
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Coding sequence (CDS) from alignment at S-dermatodea_contig12015:5774..6476+

>mRNA_S-dermatodea_contig12015.1253.1 ID=mRNA_S-dermatodea_contig12015.1253.1|Name=mRNA_S-dermatodea_contig12015.1253.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at S-dermatodea_contig12015:5774..6476+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTATGATGCTCGAGGCAATCATGACAACCTTCTCTCTGCCTACCCACA
CACCACCCCCTCCTCGTATAATTCCACTACCATTTCCGCGCACCCCAGCA
GACAAACTTCTCTCTGGGGTGGGGGGGGGTCCGGGGGAGGCGTACTCAAG
CCCAAGCGTTTCATGCGTTTAGCTGTTGAGGCCATTGGCCACACGCGTGT
CCTAGGGAGGACGGAGCAGTGTTCCCACAGGATCGATCGATCGTATGAGA
GATGGCCAATCGTTCCTACCCACGGTGGTAGCGCAATTCATGGTACCCTA
TTCTATGAATCTACTTCAGTTCTCGCCTTTTTCGGGCCACATACATACTG
CCTCCCGGTATTGCTACAATACTGCCTTCGTCTGGCTCGGAGGGGGGCGG
GGGGCTGAATGTATGATGCTCGAGGCAATCATGACAACCTTCTCTCTGCC
TACCCACACACCACCCCCTCCTCGTATAATTCCACTACCATTTCCGCGCA
CCCCAGCAGACAAACTTCTCTCTGGGGTGGGGGGGGGTCCGGGGGAGGCG
TACTCAAGCCCAAGCGTTTCATGCGTTTAGCTGTTGAGGCCATTGGCCAC
ACGCGTGTCCTAGGGAGGACGGAGCAGTGTTCCCACAGGATCGATCGATC
GTATGAGAGATGGCCAATCGTTCCTACCCACGGTGGTAGCGCAATTCATG
GTACCCTATTCTATGAATCTACTTCAGTTCTCGCCTTTTTCGGGCCACAT
ACATACTGCCTCCCGGTATTGCTACAATACTGCCTTCGTCTGGCTCGGAG
GGGGGCGGGGGGCTGA
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