mRNA_S-dermatodea_contig12014.1251.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12014.1251.1
Unique NamemRNA_S-dermatodea_contig12014.1251.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig12014.1251.1 vs. uniprot
Match: D7G3G4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3G4_ECTSI)

HSP 1 Score: 172 bits (435), Expect = 1.450e-50
Identity = 104/216 (48.15%), Postives = 125/216 (57.87%), Query Frame = 1 
Query:   16 LGSLFSPPMDEPGTITVVKAIFFRKEGNVVRCVETDRLVKAIRLGRVDAKSMSRLMQGFTSARGANVLGGRGVAYVGPRPSD-------GQFFTSGQGVSQLLDTVLSKSTVGKRFVLCFSSGLDTCAHLVTGSLEA----GAATT------HNAINTANVAP---RAVIYGESCERAGRPASPRDAVGGAGARVLSVADWAGVYGECNESLLWGW 603
            +GS F P + E   I  VK         VV   E  R VKAIRLGRVDAKS   L +GFTS +   +L  RG  Y GPRP+          FF+SGQG++ LL +V +   VG RFVLCFS G+D CA ++TG L A    G  +T       N  +    +P    A+I+GESCERAGRPA  RD + GAGARVLSV DW  VYGEC+ESLL  W
Sbjct:    1 MGSFFYPALSERSLIAFVK--------EVVSPTEVGRAVKAIRLGRVDAKSFFWLTRGFTSTKATELLAERGGRYAGPRPASHTSACTGSPFFSSGQGITSLLSSVSANGRVGDRFVLCFSDGVDACAQMITGCLVATDGSGDCSTGSRYHDDNTYHLGGSSPPPCSAIIFGESCERAGRPAGERDGINGAGARVLSVLDWVSVYGECSESLLCAW 208
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12014.1251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3G4_ECTSI1.450e-5048.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12014contigS-dermatodea_contig12014:2831..3638 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size603
Cds size603
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924227.2128801-CDS-S-dermatodea_contig12014:2830..31241622924227.2128801-CDS-S-dermatodea_contig12014:2830..3124Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12014 2831..3124 -
1694079108.4283361-CDS-S-dermatodea_contig12014:2830..31241694079108.4283361-CDS-S-dermatodea_contig12014:2830..3124Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12014 2831..3124 -
1622924227.224705-CDS-S-dermatodea_contig12014:3329..36381622924227.224705-CDS-S-dermatodea_contig12014:3329..3638Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12014 3330..3638 -
1694079108.43774-CDS-S-dermatodea_contig12014:3329..36381694079108.43774-CDS-S-dermatodea_contig12014:3329..3638Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12014 3330..3638 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12014.1251.1prot_S-dermatodea_contig12014.1251.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12014 2831..3638 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12014.1251.1

>prot_S-dermatodea_contig12014.1251.1 ID=prot_S-dermatodea_contig12014.1251.1|Name=mRNA_S-dermatodea_contig12014.1251.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=201bp
MTYHPLGSLFSPPMDEPGTITVVKAIFFRKEGNVVRCVETDRLVKAIRLG
RVDAKSMSRLMQGFTSARGANVLGGRGVAYVGPRPSDGQFFTSGQGVSQL
LDTVLSKSTVGKRFVLCFSSGLDTCAHLVTGSLEAGAATTHNAINTANVA
PRAVIYGESCERAGRPASPRDAVGGAGARVLSVADWAGVYGECNESLLWG
W
back to top

mRNA from alignment at S-dermatodea_contig12014:2831..3638-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12014.1251.1 ID=mRNA_S-dermatodea_contig12014.1251.1|Name=mRNA_S-dermatodea_contig12014.1251.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=808bp|location=Sequence derived from alignment at S-dermatodea_contig12014:2831..3638- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACCTACCACCCTCTGGGCAGCCTTTTCTCTCCTCCCATGGACGAGCC
CGGCACCATTACCGTCGTGAAGGCGATCTTCTTCCGAAAAGAGGGAAACG
TAGTTCGTTGCGTTGAGACTGACCGGCTTGTGAAGGCCATCCGGCTGGGA
CGCGTGGACGCCAAGTCCATGTCCCGGCTGATGCAGGGCTTCACGTCAGC
GAGGGGCGCCAATGTGCTCGGGGGACGAGGAGTGGCGTACGTCGGCCCGC
GGCCGTCAGATGGACAGTTCTTCACCTCCGGGCAGGGTGTGTCACAGCTC
TTGGATACGGTGCGTAAAGACAAACCTTGACAACATACGGCATACTAAGT
TCGTCCCTGGAGATCATGGCATTTAAGTTCGTCCCTGGGGATCACGGCAT
TTGGAAACGACAAAACGGTGGCTGGGGTTATGAGTTTCCAATTTTTTCGC
CTCCACTTCCATCGGTATTCCGCTCTCGCGCCCCCTGAGCCCCCGCGCCT
ACTGCACGGCGCAGGTTTTGTCGAAGAGCACCGTCGGCAAGAGATTCGTC
CTCTGCTTCTCGTCCGGCTTAGACACGTGCGCTCACCTCGTCACGGGATC
CCTCGAAGCGGGCGCCGCCACGACCCACAACGCGATCAACACTGCCAATG
TCGCGCCTCGTGCCGTTATCTACGGCGAGAGCTGTGAGAGGGCGGGGAGG
CCGGCTTCCCCGCGCGACGCGGTAGGCGGGGCGGGGGCCAGGGTCCTTAG
CGTTGCGGACTGGGCGGGTGTGTACGGGGAATGCAACGAGTCCCTGCTCT
GGGGGTGG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig12014:2831..3638-

>mRNA_S-dermatodea_contig12014.1251.1 ID=mRNA_S-dermatodea_contig12014.1251.1|Name=mRNA_S-dermatodea_contig12014.1251.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1206bp|location=Sequence derived from alignment at S-dermatodea_contig12014:2831..3638- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACCTACCACCCTCTGGGCAGCCTTTTCTCTCCTCCCATGGACGAGCC
CGGCACCATTACCGTCGTGAAGGCGATCTTCTTCCGAAAAGAGGGAAACG
TAGTTCGTTGCGTTGAGACTGACCGGCTTGTGAAGGCCATCCGGCTGGGA
CGCGTGGACGCCAAGTCCATGTCCCGGCTGATGCAGGGCTTCACGTCAGC
GAGGGGCGCCAATGTGCTCGGGGGACGAGGAGTGGCGTACGTCGGCCCGC
GGCCGTCAGATGGACAGTTCTTCACCTCCGGGCAGGGTGTGTCACAGCTC
TTGGATACGATGACCTACCACCCTCTGGGCAGCCTTTTCTCTCCTCCCAT
GGACGAGCCCGGCACCATTACCGTCGTGAAGGCGATCTTCTTCCGAAAAG
AGGGAAACGTAGTTCGTTGCGTTGAGACTGACCGGCTTGTGAAGGCCATC
CGGCTGGGACGCGTGGACGCCAAGTCCATGTCCCGGCTGATGCAGGGCTT
CACGTCAGCGAGGGGCGCCAATGTGCTCGGGGGACGAGGAGTGGCGTACG
TCGGCCCGCGGCCGTCAGATGGACAGTTCTTCACCTCCGGGCAGGGTGTG
TCACAGCTCTTGGATACGGTTTTGTCGAAGAGCACCGTCGGCAAGAGATT
CGTCCTCTGCTTCTCGTCCGGCTTAGACACGTGCGCTCACCTCGTCACGG
GATCCCTCGAAGCGGGCGCCGCCACGACCCACAACGCGATCAACACTGCC
AATGTCGCGCCTCGTGCCGTTATCTACGGCGAGAGCTGTGAGAGGGCGGG
GAGGCCGGCTTCCCCGCGCGACGCGGTAGGCGGGGCGGGGGCCAGGGTCC
TTAGCGTTGCGGACTGGGCGGGTGTGTACGGGGAATGCAACGAGTCCCTG
CTCTGGGGGTGGGTTTTGTCGAAGAGCACCGTCGGCAAGAGATTCGTCCT
CTGCTTCTCGTCCGGCTTAGACACGTGCGCTCACCTCGTCACGGGATCCC
TCGAAGCGGGCGCCGCCACGACCCACAACGCGATCAACACTGCCAATGTC
GCGCCTCGTGCCGTTATCTACGGCGAGAGCTGTGAGAGGGCGGGGAGGCC
GGCTTCCCCGCGCGACGCGGTAGGCGGGGCGGGGGCCAGGGTCCTTAGCG
TTGCGGACTGGGCGGGTGTGTACGGGGAATGCAACGAGTCCCTGCTCTGG
GGGTGG
back to top