mRNA_S-dermatodea_contig12010.1250.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12010.1250.1
Unique NamemRNA_S-dermatodea_contig12010.1250.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12010.1250.1 vs. uniprot
Match: D8LN25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN25_ECTSI)

HSP 1 Score: 429 bits (1102), Expect = 1.320e-141
Identity = 214/218 (98.17%), Postives = 217/218 (99.54%), Query Frame = 1 
Query:    1 QVLYTKEPEPDYVEASITTVMQIHLSEPAGDILLFLTGQEEIDTCCEILFSRMKALGDLAPELMILPVYGALPSEMQSRIFEPPPAGTRKVVVATNIAEASLTIDGIYYVIDPGFCKQKAYNPKMGMDSLVVSPISQASARQRAGRAGRTGPGKCYRLYTESAYKTEMLSSSVPEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPPVQTLVSAMENLY 654
            +VLYTKEPEPDYVEASITTVMQIHLSEPAGDILLFLTGQEEIDTCCEILFSRMKALGDLAPELMILPVYGALPSEMQSRIFEPPPAGTRKVVVATNIAEASLTIDGIYYVIDPGFCKQKAYNPKMGMDSLVVSPISQASARQRAGRAGRTGPGKCYRLYTESAYK EMLSSSVPEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPP+QT+VSAMENLY
Sbjct:  763 KVLYTKEPEPDYVEASITTVMQIHLSEPAGDILLFLTGQEEIDTCCEILFSRMKALGDLAPELMILPVYGALPSEMQSRIFEPPPAGTRKVVVATNIAEASLTIDGIYYVIDPGFCKQKAYNPKMGMDSLVVSPISQASARQRAGRAGRTGPGKCYRLYTESAYKQEMLSSSVPEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPPLQTMVSAMENLY 980
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BLAST of mRNA_S-dermatodea_contig12010.1250.1 vs. uniprot
Match: A0A6H5LEZ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEZ0_9PHAE)

HSP 1 Score: 429 bits (1103), Expect = 5.500e-139
Identity = 214/218 (98.17%), Postives = 217/218 (99.54%), Query Frame = 1 
Query:    1 QVLYTKEPEPDYVEASITTVMQIHLSEPAGDILLFLTGQEEIDTCCEILFSRMKALGDLAPELMILPVYGALPSEMQSRIFEPPPAGTRKVVVATNIAEASLTIDGIYYVIDPGFCKQKAYNPKMGMDSLVVSPISQASARQRAGRAGRTGPGKCYRLYTESAYKTEMLSSSVPEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPPVQTLVSAMENLY 654
            +VLYTKEPEPDYVEASITTVMQIHLSEPAGDILLFLTGQEEIDTCCEILFSRMKALGDLAPELMILPVYGALPSEMQSRIFEPPPAGTRKVVVATNIAEASLTIDGIYYVIDPGFCKQKAYNPKMGMDSLVVSPISQASARQRAGRAGRTGPGKCYRLYTESAYK EMLSSSVPEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPP+QT+VSAMENLY
Sbjct:  827 EVLYTKEPEPDYVEASITTVMQIHLSEPAGDILLFLTGQEEIDTCCEILFSRMKALGDLAPELMILPVYGALPSEMQSRIFEPPPAGTRKVVVATNIAEASLTIDGIYYVIDPGFCKQKAYNPKMGMDSLVVSPISQASARQRAGRAGRTGPGKCYRLYTESAYKQEMLSSSVPEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPPLQTMVSAMENLY 1044
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BLAST of mRNA_S-dermatodea_contig12010.1250.1 vs. uniprot
Match: A0A835YV72_9STRA (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV72_9STRA)

HSP 1 Score: 407 bits (1047), Expect = 1.220e-130
Identity = 200/218 (91.74%), Postives = 212/218 (97.25%), Query Frame = 1 
Query:    1 QVLYTKEPEPDYVEASITTVMQIHLSEPAGDILLFLTGQEEIDTCCEILFSRMKALGDLAPELMILPVYGALPSEMQSRIFEPPPAGTRKVVVATNIAEASLTIDGIYYVIDPGFCKQKAYNPKMGMDSLVVSPISQASARQRAGRAGRTGPGKCYRLYTESAYKTEMLSSSVPEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPPVQTLVSAMENLY 654
            ++LYTKEPEPDYVEA ITTVMQIHLSEPAGDIL+FLTGQEEIDTCCEIL+SRMKALGDLAPEL+ILPVYG+LPSEMQSRIF+PPPAGTRK VVATNIAEASLTIDGIYYVIDPGFCKQKAYN KMGMDSLVV+PISQASARQRAGRAGRTGPGKCYRLYTE AYK+EML SS+PEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPP+ TLVSAME+LY
Sbjct:  855 EILYTKEPEPDYVEACITTVMQIHLSEPAGDILVFLTGQEEIDTCCEILYSRMKALGDLAPELIILPVYGSLPSEMQSRIFDPPPAGTRKCVVATNIAEASLTIDGIYYVIDPGFCKQKAYNAKMGMDSLVVTPISQASARQRAGRAGRTGPGKCYRLYTEVAYKSEMLPSSIPEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPPIGTLVSAMESLY 1072
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BLAST of mRNA_S-dermatodea_contig12010.1250.1 vs. uniprot
Match: A0A7S3XU43_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XU43_HETAK)

HSP 1 Score: 385 bits (990), Expect = 3.620e-128
Identity = 186/218 (85.32%), Postives = 204/218 (93.58%), Query Frame = 1 
Query:    1 QVLYTKEPEPDYVEASITTVMQIHLSEPAGDILLFLTGQEEIDTCCEILFSRMKALGDLAPELMILPVYGALPSEMQSRIFEPPPAGTRKVVVATNIAEASLTIDGIYYVIDPGFCKQKAYNPKMGMDSLVVSPISQASARQRAGRAGRTGPGKCYRLYTESAYKTEMLSSSVPEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPPVQTLVSAMENLY 654
            +++YTK+PEPDY++ASI TVMQIHLSEPAGDILLFLTGQEEIDT  EIL++RMKALGDLAPEL++LPVYGALPSEMQSRIFEP P G RK V+ATNIAEASLTIDGIYYV+DPGFCKQK YNP +GMDSLVV+P SQASARQRAGRAGRTGPGKCYRLYTE+AYKTEM+  S+PEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPPVQTL+ AME LY
Sbjct:  396 EIMYTKDPEPDYLDASIVTVMQIHLSEPAGDILLFLTGQEEIDTSSEILYNRMKALGDLAPELIVLPVYGALPSEMQSRIFEPAPEGARKCVIATNIAEASLTIDGIYYVVDPGFCKQKCYNPTVGMDSLVVTPCSQASARQRAGRAGRTGPGKCYRLYTEAAYKTEMMPMSIPEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPPVQTLIGAMEALY 613
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BLAST of mRNA_S-dermatodea_contig12010.1250.1 vs. uniprot
Match: A0A1E7FST2_9STRA (Putative ATP-dependent RNA helicase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FST2_9STRA)

HSP 1 Score: 380 bits (976), Expect = 5.060e-127
Identity = 184/218 (84.40%), Postives = 205/218 (94.04%), Query Frame = 1 
Query:    1 QVLYTKEPEPDYVEASITTVMQIHLSEPAGDILLFLTGQEEIDTCCEILFSRMKALGDLAPELMILPVYGALPSEMQSRIFEPPPAGTRKVVVATNIAEASLTIDGIYYVIDPGFCKQKAYNPKMGMDSLVVSPISQASARQRAGRAGRTGPGKCYRLYTESAYKTEMLSSSVPEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPPVQTLVSAMENLY 654
            ++LYTKEPE DY++A + TVMQIHLSEPAGD+L+FLTGQEEIDTCCE L++RM+ALGDLAP+L+ILPVY ALPSEMQSRIFEP P G+RK VVATNIAEASLTIDGIYYV+DPGF KQKA+NPK+GMDSLVV+PISQASARQRAGRAGRTGPGKCYRLYTE A+KTEMLS++VPEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPPV TLV A+E LY
Sbjct:  134 EILYTKEPESDYLDACLITVMQIHLSEPAGDVLVFLTGQEEIDTCCETLYTRMQALGDLAPDLIILPVYSALPSEMQSRIFEPAPIGSRKCVVATNIAEASLTIDGIYYVVDPGFSKQKAFNPKLGMDSLVVTPISQASARQRAGRAGRTGPGKCYRLYTEHAFKTEMLSTNVPEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPPVATLVMALETLY 351
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BLAST of mRNA_S-dermatodea_contig12010.1250.1 vs. uniprot
Match: A0A7S2RT52_9STRA (Hypothetical protein (Fragment) n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RT52_9STRA)

HSP 1 Score: 380 bits (976), Expect = 1.040e-126
Identity = 183/218 (83.94%), Postives = 205/218 (94.04%), Query Frame = 1 
Query:    1 QVLYTKEPEPDYVEASITTVMQIHLSEPAGDILLFLTGQEEIDTCCEILFSRMKALGDLAPELMILPVYGALPSEMQSRIFEPPPAGTRKVVVATNIAEASLTIDGIYYVIDPGFCKQKAYNPKMGMDSLVVSPISQASARQRAGRAGRTGPGKCYRLYTESAYKTEMLSSSVPEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPPVQTLVSAMENLY 654
            +++YTKEPE DY++A I TVMQIHLSEPAGDIL+FLTGQEEIDTCCE L +RM+ALG+LAPEL+ILPVYGALPSEMQSRIFEP P G+RK VVATNIAEASLTIDGIYYVIDPGFCKQKA+N KMGMDSLVV+PISQAS +QR+GRAGRTGPGKCYRLYTE A++TEML SS+PEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPP+QT+V AME+L+
Sbjct:  196 EIMYTKEPEADYLDACIITVMQIHLSEPAGDILVFLTGQEEIDTCCETLHTRMQALGELAPELIILPVYGALPSEMQSRIFEPAPPGSRKCVVATNIAEASLTIDGIYYVIDPGFCKQKAFNAKMGMDSLVVTPISQASGKQRSGRAGRTGPGKCYRLYTEQAFRTEMLPSSIPEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPPIQTMVGAMESLF 413
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BLAST of mRNA_S-dermatodea_contig12010.1250.1 vs. uniprot
Match: A0A7S2MKF0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MKF0_9STRA)

HSP 1 Score: 390 bits (1002), Expect = 1.880e-125
Identity = 188/218 (86.24%), Postives = 208/218 (95.41%), Query Frame = 1 
Query:    1 QVLYTKEPEPDYVEASITTVMQIHLSEPAGDILLFLTGQEEIDTCCEILFSRMKALGDLAPELMILPVYGALPSEMQSRIFEPPPAGTRKVVVATNIAEASLTIDGIYYVIDPGFCKQKAYNPKMGMDSLVVSPISQASARQRAGRAGRTGPGKCYRLYTESAYKTEMLSSSVPEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPPVQTLVSAMENLY 654
            +++YTK+PE DY++A+I TVMQIHLSEPAGDIL+FLTGQEEIDTCCEILF+RMKALG+LAP+L+ILPVYGALPSEMQSRIFEP P G RK VVATNIAEASLTI+GIYYVIDPGFCKQKAYNPKMGMDSLVV+PISQAS RQRAGRAGRTGPGKCYRLYTE A++TEML SS+PEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPPVQT+V AME+L+
Sbjct:  665 EIMYTKDPESDYLDATIITVMQIHLSEPAGDILVFLTGQEEIDTCCEILFTRMKALGELAPDLIILPVYGALPSEMQSRIFEPAPVGARKCVVATNIAEASLTINGIYYVIDPGFCKQKAYNPKMGMDSLVVTPISQASCRQRAGRAGRTGPGKCYRLYTEQAFRTEMLPSSIPEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPPVQTMVGAMESLF 882
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BLAST of mRNA_S-dermatodea_contig12010.1250.1 vs. uniprot
Match: A0A7S4IK43_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IK43_9STRA)

HSP 1 Score: 383 bits (984), Expect = 3.030e-124
Identity = 186/218 (85.32%), Postives = 206/218 (94.50%), Query Frame = 1 
Query:    1 QVLYTKEPEPDYVEASITTVMQIHLSEPAGDILLFLTGQEEIDTCCEILFSRMKALGDLAPELMILPVYGALPSEMQSRIFEPPPAGTRKVVVATNIAEASLTIDGIYYVIDPGFCKQKAYNPKMGMDSLVVSPISQASARQRAGRAGRTGPGKCYRLYTESAYKTEMLSSSVPEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPPVQTLVSAMENLY 654
            ++LYTKEPE DY++A++ TVMQIHLSEPAGD+L+FLTGQEEIDTCCE L+ RM+ALGDLAPEL++LPVY ALPSEMQSRIFEP PAG+RKVVVATNIAEASLTIDGIYYV+DPGF KQKA+N K+GMDSLVV+PISQASARQRAGRAGRTGPGKCYRLYTE AYK EMLS++VPEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPPV TLV AMENL+
Sbjct:  497 EILYTKEPESDYLDATLITVMQIHLSEPAGDVLVFLTGQEEIDTCCETLYQRMQALGDLAPELIVLPVYSALPSEMQSRIFEPAPAGSRKVVVATNIAEASLTIDGIYYVVDPGFSKQKAFNAKLGMDSLVVTPISQASARQRAGRAGRTGPGKCYRLYTEIAYKNEMLSTNVPEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPPVATLVGAMENLH 714
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BLAST of mRNA_S-dermatodea_contig12010.1250.1 vs. uniprot
Match: A0A8J2T0T2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T0T2_9STRA)

HSP 1 Score: 380 bits (977), Expect = 1.800e-122
Identity = 183/218 (83.94%), Postives = 206/218 (94.50%), Query Frame = 1 
Query:    1 QVLYTKEPEPDYVEASITTVMQIHLSEPAGDILLFLTGQEEIDTCCEILFSRMKALGDLAPELMILPVYGALPSEMQSRIFEPPPAGTRKVVVATNIAEASLTIDGIYYVIDPGFCKQKAYNPKMGMDSLVVSPISQASARQRAGRAGRTGPGKCYRLYTESAYKTEMLSSSVPEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPPVQTLVSAMENLY 654
            +VLYTKEPE DY++A++ TVMQIHLSEPAGDIL+FLTGQEEIDTCCE+L+SRM+ LGDLAPEL+ILPVYGALP+EMQSRIFEP P G RK VVATNIAEASLTIDGIYYV+DPGFCKQKAYNPK+GMDSLVV+PISQASA+QR+GRAGRTGPGKCYRLYTE+A +TEML +S+PEIQRTNLGNVVLQLKAMGI+DLL FDFMDPPPV TLV AM++LY
Sbjct:  580 EVLYTKEPEQDYLDAALITVMQIHLSEPAGDILVFLTGQEEIDTCCEVLYSRMQQLGDLAPELIILPVYGALPAEMQSRIFEPAPTGARKCVVATNIAEASLTIDGIYYVVDPGFCKQKAYNPKLGMDSLVVTPISQASAKQRSGRAGRTGPGKCYRLYTEAALRTEMLPTSIPEIQRTNLGNVVLQLKAMGIHDLLKFDFMDPPPVATLVGAMQSLY 797
[Close]
BLAST of mRNA_S-dermatodea_contig12010.1250.1 vs. uniprot
Match: A0A7S2L5V9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L5V9_9STRA)

HSP 1 Score: 368 bits (945), Expect = 1.890e-122
Identity = 180/217 (82.95%), Postives = 199/217 (91.71%), Query Frame = 1 
Query:    1 QVLYTKEPEPDYVEASITTVMQIHLSEPAGDILLFLTGQEEIDTCCEILFSRMKALGDLAPELMILPVYGALPSEMQSRIFEPPPAGTRKVVVATNIAEASLTIDGIYYVIDPGFCKQKAYNPKMGMDSLVVSPISQASARQRAGRAGRTGPGKCYRLYTESAYKTEMLSSSVPEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPPVQTLVSAMENL 651
            +++YTKEPE DY++AS+ T+MQIHLSEPAGDILLFLTGQEEIDT CE L+SRM+ALGDLAPEL+ILPVY +LPSEMQSRIFE  P G RK +VATNIAEASLTIDGIYYV+DPGF KQKA+N K+GMDSLVV+PISQASARQRAGRAGRTGPGKCYRLYTE AYK EML +++PEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPPV TLV AME L
Sbjct:  359 EIMYTKEPESDYMDASLITIMQIHLSEPAGDILLFLTGQEEIDTACETLYSRMQALGDLAPELIILPVYSSLPSEMQSRIFERAPPGARKCIVATNIAEASLTIDGIYYVVDPGFSKQKAFNAKLGMDSLVVTPISQASARQRAGRAGRTGPGKCYRLYTEMAYKNEMLPTNIPEIQRTNLGNVVLQLKAMGINDLLGFDFMDPPPVATLVGAMEAL 575
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12010.1250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN25_ECTSI1.320e-14198.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LEZ0_9PHAE5.500e-13998.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YV72_9STRA1.220e-13091.74Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
A0A7S3XU43_HETAK3.620e-12885.32Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A1E7FST2_9STRA5.060e-12784.40Putative ATP-dependent RNA helicase n=1 Tax=Fragil... [more]
A0A7S2RT52_9STRA1.040e-12683.94Hypothetical protein (Fragment) n=2 Tax=Rhizochrom... [more]
A0A7S2MKF0_9STRA1.880e-12586.24Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S4IK43_9STRA3.030e-12485.32Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A8J2T0T2_9STRA1.800e-12283.94Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2L5V9_9STRA1.890e-12282.95Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12010contigS-dermatodea_contig12010:777..6247 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score431.4
Seed ortholog evalue2.5e-118
Seed eggNOG ortholog2880.D8LN25
Preferred nameDHX8
KEGG koko:K12818
KEGG Pathwayko03040,map03040
GOsGO:0000003,GO:0000350,GO:0000375,GO:0000377,GO:0000390,GO:0000393,GO:0000398,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003729,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0005739,GO:0005829,GO:0005911,GO:0006139,GO:0006325,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007530,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009506,GO:0009653,GO:0009790,GO:0009987,GO:0010171,GO:0010172,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016604,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018992,GO:0019953,GO:0022411,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030054,GO:0030154,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032984,GO:0032988,GO:0032991,GO:0034622,GO:0034641,GO:0040007,GO:0040021,GO:0040022,GO:0042623,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0046483,GO:0048468,GO:0048477,GO:0048589,GO:0048598,GO:0048609,GO:0048856,GO:0048869,GO:0051276,GO:0051704,GO:0055044,GO:0065003,GO:0070013,GO:0070035,GO:0071007,GO:0071013,GO:0071014,GO:0071020,GO:0071021,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901363,GO:1902494,GO:1990904
EggNOG free text desc.helicase activity
EggNOG OGsCOG1643@1,KOG0922@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041
Hectar predicted targeting categoryother localisation
Exons5
Model size654
Cds size654
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12010.1250.1prot_S-dermatodea_contig12010.1250.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12010 777..6247 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924227.1155717-CDS-S-dermatodea_contig12010:776..8631622924227.1155717-CDS-S-dermatodea_contig12010:776..863Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12010 777..863 -
1694079108.3712268-CDS-S-dermatodea_contig12010:776..8631694079108.3712268-CDS-S-dermatodea_contig12010:776..863Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12010 777..863 -
1622924227.1320598-CDS-S-dermatodea_contig12010:1467..16231622924227.1320598-CDS-S-dermatodea_contig12010:1467..1623Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12010 1468..1623 -
1694079108.3807957-CDS-S-dermatodea_contig12010:1467..16231694079108.3807957-CDS-S-dermatodea_contig12010:1467..1623Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12010 1468..1623 -
1622924227.1489363-CDS-S-dermatodea_contig12010:3633..37741622924227.1489363-CDS-S-dermatodea_contig12010:3633..3774Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12010 3634..3774 -
1694079108.399153-CDS-S-dermatodea_contig12010:3633..37741694079108.399153-CDS-S-dermatodea_contig12010:3633..3774Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12010 3634..3774 -
1622924227.162755-CDS-S-dermatodea_contig12010:4833..49021622924227.162755-CDS-S-dermatodea_contig12010:4833..4902Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12010 4834..4902 -
1694079108.410178-CDS-S-dermatodea_contig12010:4833..49021694079108.410178-CDS-S-dermatodea_contig12010:4833..4902Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12010 4834..4902 -
1622924227.174565-CDS-S-dermatodea_contig12010:6046..62471622924227.174565-CDS-S-dermatodea_contig12010:6046..6247Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12010 6047..6247 -
1694079108.418804-CDS-S-dermatodea_contig12010:6046..62471694079108.418804-CDS-S-dermatodea_contig12010:6046..6247Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12010 6047..6247 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12010.1250.1

>prot_S-dermatodea_contig12010.1250.1 ID=prot_S-dermatodea_contig12010.1250.1|Name=mRNA_S-dermatodea_contig12010.1250.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=218bp
QVLYTKEPEPDYVEASITTVMQIHLSEPAGDILLFLTGQEEIDTCCEILF
SRMKALGDLAPELMILPVYGALPSEMQSRIFEPPPAGTRKVVVATNIAEA
SLTIDGIYYVIDPGFCKQKAYNPKMGMDSLVVSPISQASARQRAGRAGRT
GPGKCYRLYTESAYKTEMLSSSVPEIQRTNLGNVVLQLKAMGINDLLGFD
FMDPPPVQTLVSAMENLY
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mRNA from alignment at S-dermatodea_contig12010:777..6247-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12010.1250.1 ID=mRNA_S-dermatodea_contig12010.1250.1|Name=mRNA_S-dermatodea_contig12010.1250.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5471bp|location=Sequence derived from alignment at S-dermatodea_contig12010:777..6247- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTGCTGTACACGAAAGAGCCGGAGCCGGACTACGTTGAGGCGAGCAT
CACGACGGTCATGCAGATCCACCTGTCCGAGCCGGCGGGCGATATTCTTC
TGTTCCTCACGGGGCAAGAAGAGATCGACACGTGCTGCGAGATTCTCTTC
AGCAGGATGAAGGCCCTCGGGGACTTGGCGCCCGAGCTCATGATCCTCCC
GGTAAAGGGGGCTTTGCGCGCGAGCCGCTACCGTTTGTTATCGTATATAT
CGTGTGTGATGGTTGTGTGGGGGTGTCTATAAACGCAATAGTATCTTCTT
TGGTATCGCAGAAGCTAGGATTATGACGAGCAGCTGGTATAGTCCCTTTT
ATCAAACGCGACATGGCCGGCGACATCCCGGCATACCGCTCCTTGTCGGC
ATTTTTTACAAGCGTGGCCTGTGTCCGTTTGGATACGACATGCGTCAAAC
GTACACCCCCCACCCCCCTCTCCCTCTGCCGCCCCTCTCTGTTGTTTTAT
TTTTTTGTGTATTTTTAAACAGTATGAACAATTATATAACTGCATTGTAC
GGCAATGCTGTTCTTCGTCGTACCGCTCCTGTTCAGCTAGTTTTGGACAT
CTTCCCCCTCGTCTGCTCGTATTGTGTTGTGGGCCAATCGTTTGCTCTCT
TGAGTCCTAGAATTTATCATCCAATCAATACGTTTGTCGCAGTACGATTA
TTTTACGCCTTTTTACGCCCACAAATCTTGGTTTGTCGGTGTCGGCCCGT
GATTCCCCCCGTTCATCCTTGTGCTATCATAGTTCCCGCTCATTTCTTAT
CCGCGTTTTTTTTCCGGCAGTGGACAATTGTTTAACTGTCAGAAGGTACA
CCTGAAACCAAGTCGCGGGAAAACGGTTCCGGCTGTGCTCTAGCTTGCCA
TTCGTCCCCGCCGGCAGAATTGAAAGAGGCGTGTCTTGTTTTTCGCCTCG
CCTGACGTGACCTTCGGGTTTAGCGCATCTCTCGAGTACTTTAGTTTACT
TTACTTCCGCGAACCCTCATCGTAACACGTTTTGAAGAAATTTTGTCGGT
AACCGCGCAGTAGGATAATCGAAACCGGGCAGGTGTACATAGCCTTTGGT
GACAGCAGTCGCGTCGTAGGGTTGAACGTTCCCCCTCGGGTTGCGGGGGG
CCCCCCTCAAAGCGAAAAAATTACCGTTTTTGGCTGTTGGGACACATTAA
ATCCCACATGCTTTTACGACTTACCGGGACGGGGTTGCATCAGATCATGT
GCACCTTGGATGGAACACATGACCCATTTGATCACATACCCACTTTATGT
CGTCGTCGTCGTCGTCTGCCCCCTTTTTCATTTTGTTGTCGACAGGTTTA
CGGCGCCCTGCCTAGCGAGATGCAGAGCCGTATCTTTGAGCCTCCGCCGG
CGGGAACGAGGAAGGTAATGTTATTATTATTATTATTATTATTATTATTA
TTATTATTATTATTATTATTATTATTATTATTATTATTATTATTAGAGTG
AACACACGGGTCTCCTTCGAAATTTTAACATTTCCAACGTTGGAATTCGA
CTTCGGGCTACTCTTGAGTTTGTGTGTGTGTGTTTTTCTTTTATCACACT
CGAGATTAAGCCGACTGATTGGCTCTACGTGTGGAAATCAATCTATCAAC
TCAATTAGCCGCACGCTGACCTGTAAGTAGCCCAAGGTTTGTTTCCCCCC
CTTTTTTTTCCCCCACCCTTCCTATGGTCTGACGACTACGGCATGCACGA
TCAATGAGTACACCCCCCCCACTCTTCCTGCTATTCGCTATGATACCTAT
TTTGCCTGGTTTGTTATCTCGCTATGATACCCTTACCAGAAGCCGGGAGA
AAGATGGCTTTGTGTTACACACGTCTCGATTCATTTTGCTATAATTTTGC
TCACGTGCCTTTGCTTCACTGGCCTTCACTATTTATAAGTAATATTGCTT
TGCACGTTTTTTAATTTCTAGCGATTTATAGGTGACCTTTGATGCCCAAT
TTCCTATACAATTCGTGATGCCAAATATTATAGATATTTTAGAGTGGTTC
ATTACAGAGTAGAATTTTGTGCCAACGCACACCGCACGGGCGTAGCCGTG
GCTACCCACCAGCATAGTATAGAGGAATACTGCTGCCGTCGACTGCCTTT
TTCCCGCCGCCACGCTGGGAGTAGCCCGTCCATTTTTTAATGTACATATC
CAGTAGATCAATCACCAATATATGCATACAATGCAGTTCTCTACATAGTT
AGACGTACATCGCTAATTCAATTTCCTCCCGCTCATGATTTGTGGATATG
ATCGAGCACGAGTCCGGCCGGGTTTGGCGCCGATCGACTGTAAGCGTGAA
GATCAAACTAACCAACGAATACATTATTTCATACATTTCACCCATGTGTA
CACACATACATTTGTCAAGGTCAATTTGTTGACAGCTTTGCGTTTATCGC
CTTTACGCGTGGTATAAATATAGGTCGTGGTGGCCACCAACATCGCGGAA
GCGTCGCTTACCATCGACGGGATCTACTACGTCATCGACCCCGGGTTCTG
CAAGCAGAAGGCCTACAACCCTAAGATGGGCATGGACTCCCTCGTCGTCA
GCCCTATTTCGCAGGTACTTTGGTTGGCTCTGCAGCGCCTTTGCTACAGC
AGTATAATATCATAGCGATTTACACTACGATTTTGGCTGCCTTGGCGTTG
TGTTTAAGCATCATATGCATACTACGGAATCACAGCTGCAGCGGATTGAT
TTTCCGTTTTTTTTTTTTTTTTCATTTTCTAGGGGCGAGAGTCTCCCATT
TATTTTCCCTCCTGATCCGCCGGTCTTGTTTTATGGGCCACATCAAGAGC
AGGATTTTTTTTTTAACCCTTTTGGAACTAGCCTCTAATACTAATACTAA
TACTAATACTAATACTGTTTGGAGCGCCTGTTAGCACGTAATGAGGCGTG
CTTGAAGCGGGGCCCTGGGGAACTCCATGGGTTATGACTTCGCAGGAATG
AGAGAGAACGGAGCGCAAGGGAAACGGTGCTGTAGCTGTCGACTGGCATG
GAGAGAGTTTTTGGTCGTTTCGGAGAGCCCTACTATTAACAGTATATTAA
TATTAATTTAATAGTGCCAAAAGGGTTAATATCCGCCAGTTTGGAAGAGT
TGGTCGTAAACGCACCAAGCCGGTTGACCCTTCTTTGTTTCGGGTCTTTA
ATTTGGTCCAGATACTGTATGCCTTTCTCAAAGGGACAGTTGGCGGTAAG
ATCTTATATAATGGAGCCAGCATACTTGTACGGCAGTGGTGCTTGATACC
GTATTAAGTAATGCAACAATGACCGATTGGGTATATTGATTTTAGGCAAG
GATGCTGTATGATGCCAAACAACTTGATGCTTGTGTTGAGCGATTTTTTT
TAATGTAAAAGCGAAAACACAGCAGCAGCGACACGTACAGCAGCGACACG
CACAGTAGCTCGACCGCGTTCGACCTCCGTGTCGCGTTCCGTCGGCATAT
CGTCCTGCCAACGCACACCTCACACGGGCCTAGCCTAGCCGTGGCTACCC
ACTAGTAATTAGCGAATTGCCTATATTCCAAGTCGCCGTTAGGAGAGCTC
TCGAGTAAACCTTCGAAATGCATCAACACTACACTATCGGGTTGAAGGTG
CTATGATAGTTGCAAGCCGTGGCTACCGTGGCTACGCCGGCGAGGTGTGC
GCTCGTAGGACGCGCTGGCTGTGTCCGGCACATGGAGTGCGTTACCCACC
GATAAACCCCACCCTTGCCCCGCACCCAGAAGACGAAGCCATCCTGCTGG
TTATCAAGTTACAGAGTATATGCAAGTATACTCTACATATATATGTGGGC
ACGGATATCAAGGTACATAATATATTTCGAGCAGGAAAATGGTATCATAG
AACGACCAGTGGCGCATGAGTTTGGCGGCACAGTAGTTCGACACATCGGG
CACACACGGGGAACGCCTTTTGTGCGCCCCCCTGCGCAAGGCCGTGAACC
CCCGACCTTTCCTTGAAAGTGTTTCGAATCGTCGCTGTTTTGTGTGACGA
ACAGCTGGCGACCATGGAAGCAGTTGCGGTGCGTGGACAGACAGGTCTAA
AGGCTTTAGACGGATTCGCTATCGACCGGACCTGGTGAGGTGCGAGGCCA
GAGCCAGAGGAGAGCCACAAGCACAAGTGCAAATTTGCTGTGGGGCATTT
TCCCTCTATAACTACAGCATAACCCTCGGAAATTGCTTTTAAAATTTCGA
ATTGGGTCGAACTCTATTCTTTACACCCTCTCATGGCACCGCCCTAAAGG
CAAGCCCCCCCCCCCCCTCCCCTCCCCTGCTCCATCCACCTTCCCCCAAA
GAGCAATCCAAAGCTAGGGAGAGTCAAAAATCGGCTTTTGTCTGGCGCGC
AGGAGTTACGGTCGAAGGCGTTTGTCCATTTTGCTGTGCTCGCGCCTGAT
TGGCCAGCCCATCTCAGCATCATATCCCGTTCCGAGTTTACCATATATCA
ACCGATATGTTCCGGATTGCAGCATTATTTTTGTGGCTGGCCAGCCGACC
CCTGCCCCCCCCCCCCCACCTCCTTTCACCTTCCCCCAAACCCATGTGCC
ATACTCTGTACAAAACCCTGCCAGGCGAGCGCGAGGCAGAGGGCAGGCAG
GGCGGGGCGTACCGGCCCTGGGAAGTGCTATCGCCTCTATACGGAATCTG
CCTACAAGACGGAGATGCTCTCCAGCTCCGTCCCAGAGATCCAGCGGACG
AACCTCGGCAACGTCGTACTGCAGCTCAAGGTGCGTGCCCGCGTGTGCGT
TTCCGTCGGGTTCAAAGCAACGTGGATGTTGTCGGTCGCCCTCTCGCCTA
TCTCGATTACCCCTTACTACCCCTTACTCCATTTTTTGACGACGCGTGTG
TATGTAGGCATGCCTTCAAACGTGATGTTTTGTCGGGGGGGTGTGTTGGG
TCTGTAGAAATTATTTACGTGCTTGGCCACTCTTGTGATGTATTTCCGCT
CGCCTGCCTGCCTGCCTGCCTGTGTTTTTTGCTTTTTTATTTTATCTTGT
TTGTTCCTGCTGAAGTCAATAAGACTGACTCCTCGCGGAAAAAACGTTCG
GTGTTTTGATTCTGTTGTTGTGTATTGTCTATGATGTGTGTATGTGTTTT
TCCTTTGATACGTGAATGTGAGTGTAAGGATGGTTGTGGGATTTTTTTTT
TAAAGCATATACATAGGTGCGGGCGAAGGGTGCCCATATAGTACCGCTGC
ATTCGAAGCTCCCAGCCCCCCTCCCTTCCCTTCCCTACCCAAAACCTAGC
AATGAACGTGGACGTCTCTACCTCCCGTGTTTGAGCGCTGCTTTGCTTGG
AATTGCTCTTGTCGGCCGGTTTGTTACTGTGAAGGCGATGGGGATCAACG
ACTTGCTCGGCTTCGACTTCATGGACCCCCCGCCGGTGCAAACACTCGTG
TCCGCGATGGAGAACCTGTAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig12010:777..6247-

>mRNA_S-dermatodea_contig12010.1250.1 ID=mRNA_S-dermatodea_contig12010.1250.1|Name=mRNA_S-dermatodea_contig12010.1250.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1308bp|location=Sequence derived from alignment at S-dermatodea_contig12010:777..6247- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTGCTGTACACGAAAGAGCCGGAGCCGGACTACGTTGAGGCGAGCAT
CACGACGGTCATGCAGATCCACCTGTCCGAGCCGGCGGGCGATATTCTTC
TGTTCCTCACGGGGCAAGAAGAGATCGACACGTGCTGCGAGATTCTCTTC
AGCAGGATGAAGGCCCTCGGGGACTTGGCGCCCGAGCTCATGATCCTCCC
GCAGGTGCTGTACACGAAAGAGCCGGAGCCGGACTACGTTGAGGCGAGCA
TCACGACGGTCATGCAGATCCACCTGTCCGAGCCGGCGGGCGATATTCTT
CTGTTCCTCACGGGGCAAGAAGAGATCGACACGTGCTGCGAGATTCTCTT
CAGCAGGATGAAGGCCCTCGGGGACTTGGCGCCCGAGCTCATGATCCTCC
CGGTTTACGGCGCCCTGCCTAGCGAGATGCAGAGCCGTATCTTTGAGCCT
CCGCCGGCGGGAACGAGGAAGGTTTACGGCGCCCTGCCTAGCGAGATGCA
GAGCCGTATCTTTGAGCCTCCGCCGGCGGGAACGAGGAAGGTCGTGGTGG
CCACCAACATCGCGGAAGCGTCGCTTACCATCGACGGGATCTACTACGTC
ATCGACCCCGGGTTCTGCAAGCAGAAGGCCTACAACCCTAAGATGGGCAT
GGACTCCCTCGTCGTCAGCCCTATTTCGCAGGTCGTGGTGGCCACCAACA
TCGCGGAAGCGTCGCTTACCATCGACGGGATCTACTACGTCATCGACCCC
GGGTTCTGCAAGCAGAAGGCCTACAACCCTAAGATGGGCATGGACTCCCT
CGTCGTCAGCCCTATTTCGCAGGCGAGCGCGAGGCAGAGGGCAGGCAGGG
CGGGGCGTACCGGCCCTGGGAAGTGCTATCGCCTCTATACGGAATCTGCC
TACAAGACGGAGATGCTCTCCAGCTCCGTCCCAGAGATCCAGCGGACGAA
CCTCGGCAACGTCGTACTGCAGCTCAAGGCGAGCGCGAGGCAGAGGGCAG
GCAGGGCGGGGCGTACCGGCCCTGGGAAGTGCTATCGCCTCTATACGGAA
TCTGCCTACAAGACGGAGATGCTCTCCAGCTCCGTCCCAGAGATCCAGCG
GACGAACCTCGGCAACGTCGTACTGCAGCTCAAGGCGATGGGGATCAACG
ACTTGCTCGGCTTCGACTTCATGGACCCCCCGCCGGTGCAAACACTCGTG
TCCGCGATGGAGAACCTGTACGCGATGGGGATCAACGACTTGCTCGGCTT
CGACTTCATGGACCCCCCGCCGGTGCAAACACTCGTGTCCGCGATGGAGA
ACCTGTAC
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