mRNA_S-dermatodea_contig12003.1248.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12003.1248.1
Unique NamemRNA_S-dermatodea_contig12003.1248.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig12003.1248.1 vs. uniprot
Match: A0A6H5K1D2_9PHAE (Beta_helix domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1D2_9PHAE)

HSP 1 Score: 306 bits (784), Expect = 3.480e-97
Identity = 180/343 (52.48%), Postives = 205/343 (59.77%), Query Frame = 1
Query:    1 NNIIENCGIYDFRFQFDSVIGEAIYLGTSSNQWTTFPADSNYQEFAGEGYPDESNYNLITGNILTPRGNECVDVKEGASFNMIEHNECSEQLDEESGCYDSRGNENTFRYNSGSRCLGGGIRLGGHEIDGFVYGVDNIVYGNEFEGTGHGSIKSRKEPQGLICGNSCSGSGDCDVSEEGDDEEIESTWDQPCPETLPTVPYIDD-EVPA-PAPTPEEMPVAETSSPVSQLTAPTSSSGGNHRSSGCGCGVFDLLSLHFPSATAWSRLTTSPSESKVLGGNTSSTCIGILSPQGKACCAESCGTCGGPDCSSRSGGADSCCVSNISETAEKCSATDMVGPCLVN 1023
            NN IENCGIYDFRFQFD  IGEAIY+GTSSNQW     D         G PD SNYNL+TGN L PRGNECVD+KEGA+ N++E+NEC +Q D ESGCYDSRGNENTFRYN+  +CLG GIRLGGH IDGFVYGVDN VYGNEF  T  GSIKSR EPQG+IC NSC+ +G+C VSEEGD EEIE +WDQ CP + P+VP+IDD E PA PAPT                   T S                  S                          ++TC G+LS  G  CCA SCG CGG  CS R GG + CC   I      C  T    PC+++
Sbjct:  193 NNDIENCGIYDFRFQFDGKIGEAIYIGTSSNQWEDGTGDR-----VTNG-PDGSNYNLVTGNKLVPRGNECVDIKEGATMNVVEYNECEDQRDAESGCYDSRGNENTFRYNTAVQCLGAGIRLGGHTIDGFVYGVDNHVYGNEFLETEAGSIKSRVEPQGVICDNSCA-NGECGVSEEGD-EEIEGSWDQGCPSSFPSVPFIDDLETPAAPAPTXXXXXXXXXXXXXXDEVGSTMSE----------------ASXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCNGVLSGMGYYCCAASCGECGGEGCSKRRGGENGCCTKAIQFGGVMCEDTGGQAPCILD 511          
BLAST of mRNA_S-dermatodea_contig12003.1248.1 vs. uniprot
Match: D8LJ29_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ29_ECTSI)

HSP 1 Score: 296 bits (757), Expect = 6.740e-96
Identity = 162/242 (66.94%), Postives = 181/242 (74.79%), Query Frame = 1
Query:    1 NNIIENCGIYDFRFQFDSVIGEAIYLGTSSNQWTTFPADSNYQEFAGEGYPDESNYNLITGNILTPRGNECVDVKEGASFNMIEHNECSEQLDEESGCYDSRGNENTFRYNSGSRCLGGGIRLGGHEIDGFVYGVDNIVYGNEFEGTGHGSIKSRKEPQGLICGNSCSGSGDCDVSEEGDDEEIESTWDQPCPETLPTVPYIDD-EVPA-PAPTPEEMPVAETSSPV-SQLTAPTSSSGGNH 717
            NN IENCGIYDFRFQFD  IGEAIY+GTSSNQW     D         G PD SNYNL+TGN L PRGNECVD+KEGA+ N++E+NEC +Q D ESGCYDSRGNENTFRYN+  +CLG GIRLGGH IDGFVYGVDN VYGNEF  T  GSIKSR EPQG+IC NSC+  G+C VSEEGDDEEIE +WDQ CP + P+VP+IDD E PA PAPTPE    A T SP  SQ    +  SGG +
Sbjct:   44 NNDIENCGIYDFRFQFDGKIGEAIYIGTSSNQWEDGTGDR-----VTNG-PDGSNYNLVTGNELVPRGNECVDIKEGATMNVVEYNECEDQRDAESGCYDSRGNENTFRYNTAIQCLGAGIRLGGHTIDGFVYGVDNHVYGNEFLETEAGSIKSRVEPQGVICDNSCA-DGECGVSEEGDDEEIEGSWDQGCPASFPSVPFIDDLETPAAPAPTPEV--AASTPSPTDSQNEGCSKRSGGEN 276          
BLAST of mRNA_S-dermatodea_contig12003.1248.1 vs. uniprot
Match: D8LJ42_ECTSI (FirrV-1-B30 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ42_ECTSI)

HSP 1 Score: 284 bits (726), Expect = 1.280e-86
Identity = 137/204 (67.16%), Postives = 160/204 (78.43%), Query Frame = 1
Query:    1 NNIIENCGIYDFRFQFDSVIGEAIYLGTSSNQWTTFPADSNYQEFAGEGYPDESNYNLITGNILTPRGNECVDVKEGASFNMIEHNECSEQLDEESGCYDSRGNENTFRYNSGSRCLGGGIRLGGHEIDGFVYGVDNIVYGNEFEGTGHGSIKSRKEPQGLICGNSCSGSGDCDVSEEGDDEEIESTWDQPCPETLPTVPYIDD 612
            +N IE+CGIYD+R+ FD  +GEAIY+GTSSNQW    AD           PD  NYNL+TGN L PRGNECVD+KEGA+ N++E+N+C +Q D ESGCYDSRGNENTFRYN+   CLGGGIRLGGHEIDG  YGVDN VYGN F  TG GSIK+R++PQG+IC NSC   GDCDVSEEGDDEEIE +WDQ CP +LP+VP+IDD
Sbjct:  239 DNDIEDCGIYDYRYTFDGKVGEAIYIGTSSNQWAD-GADGRVTNG-----PDGCNYNLVTGNKLVPRGNECVDIKEGATMNVVEYNDCEDQRDVESGCYDSRGNENTFRYNTAENCLGGGIRLGGHEIDGITYGVDNHVYGNSFRETGDGSIKARRDPQGVICENSCE-DGDCDVSEEGDDEEIEDSWDQECPSSLPSVPFIDD 435          
BLAST of mRNA_S-dermatodea_contig12003.1248.1 vs. uniprot
Match: D7FXR9_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR9_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 1.370e-50
Identity = 94/181 (51.93%), Postives = 120/181 (66.30%), Query Frame = 1
Query:    4 NIIENCGIYDFRFQFDSVIGEAIYLGTSSNQWTTFPADSNYQEFAGEGYPDESNYNLITGNILTPRGNECVDVKEGASFNMIEHNECSEQLDEESGCYDSRGNENTFRYNSGSRCLGGGIRLGGHEIDGFVYGVDNIVYGNEFEGTGHGSIKSRKEPQGLICGNSCSGSGDCDVSEEGDDE 546
            N I NCG++D+ F  +   GE +Y+GTSS QWT            GE   D  N N+++ N+++  GNECVD+KEG+S N+IE N CS+QLD ESGCYDSRG+ NTFRYN GS C G G+RLGG E+DG  YGV+N VYGN+F   G G++K     QG ICGN+C   G C ++  GDDE
Sbjct:  186 NTISNCGVHDYMFNSEDKNGEGVYIGTSSTQWTN-----------GE---DTCNGNVVSRNLISTSGNECVDIKEGSSGNVIEDNFCSDQLDAESGCYDSRGDGNTFRYNVGSECTGAGVRLGGWEVDGHQYGVNNSVYGNDFYAVGVGALKVLVGEQGDICGNTCE-EGSCSLT--GDDE 349          
BLAST of mRNA_S-dermatodea_contig12003.1248.1 vs. uniprot
Match: D7FXR8_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR8_ECTSI)

HSP 1 Score: 185 bits (469), Expect = 2.340e-50
Identity = 96/180 (53.33%), Postives = 117/180 (65.00%), Query Frame = 1
Query:    4 NIIENCGIYDFRFQFDSVIGEAIYLGTSSNQWTTFPADSNYQEFAGEGYPDESNYNLITGNILTPRGNECVDVKEGASFNMIEHNECSEQLDEESGCYDSRGNENTFRYNSGSRCLGGGIRLGGHEIDGFVYGVDNIVYGNEFEGTGHGSIKSRKEPQGLICGNSCSGSGDCDVSEEGDD 543
            N I NCG++D+ F      GE +Y+GTSS QWT            GE   D  N NL++GN ++  GNECVD+KEGAS N+IE N CSEQLD ESGCYDSRG+ NTFRYN G+ C+G G+RLGG E+DG  YGV N VYGN+F   G G++K     QG ICGN+C   G C +  E DD
Sbjct:  186 NTISNCGVHDYMFNSGDKNGEGVYIGTSSTQWTN-----------GE---DTCNDNLVSGNRISTSGNECVDIKEGASGNVIEDNICSEQLDAESGCYDSRGDGNTFRYNVGTDCMGAGVRLGGWEVDGHQYGVGNSVYGNDFNAVGEGALKVLVGEQGDICGNTCE-DGSCSLVGEDDD 350          
BLAST of mRNA_S-dermatodea_contig12003.1248.1 vs. uniprot
Match: D7FZD2_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZD2_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 5.740e-48
Identity = 96/206 (46.60%), Postives = 126/206 (61.17%), Query Frame = 1
Query:    1 NNIIENCGIYDFRFQFDSVIGEAIYLGTSSNQWTTFPADSNYQEFAGEGYPDESNYNLITGNILTPRGNECVDVKEGASFNMIEHNECSEQLDEESGCYDSRGNENTFRYNSGSRCLGGGIRLGGHEIDGFVYGVDNIVYGNEFEGTGHGSIKSRKEPQGLICGNSCSGSGDCDVSEEGDDEEIESTWDQPCPETLPTVPYIDDEV 618
            +N I NCGI+D+ F+   + G+ + +GTSS++W              +G  D    NL+ GN++    NECVDVKEGA  N+IE N C  QLD  SGCY+SRGN+N FR N+GS CLG G+RLGG E+DGF YGV N VY N+F   G G++K   + QG ICGN+C+G  DC +  +  D+ I+ TWD  C        Y DDEV
Sbjct:  146 SNTITNCGIHDYMFESGDMNGQGVCIGTSSDEWP-------------DGEEDVCTNNLVAGNVIDTSANECVDVKEGAYGNVIEDNMCYNQLDINSGCYNSRGNDNIFRNNAGSDCLGAGVRLGGWEVDGFQYGVGNSVYDNDFNDVGFGALKIMVDGQGTICGNTCAGD-DCQLIGDYLDDTID-TWDHAC--------YEDDEV 328          
BLAST of mRNA_S-dermatodea_contig12003.1248.1 vs. uniprot
Match: A0A6H5KT05_9PHAE (Beta_helix domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KT05_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 1.100e-46
Identity = 84/169 (49.70%), Postives = 109/169 (64.50%), Query Frame = 1
Query:    1 NNIIENCGIYDFRFQFDSVIGEAIYLGTSSNQWTTFPADSNYQEFAGEGYPDESNYNLITGNILTPRGNECVDVKEGASFNMIEHNECSEQLDEESGCYDSRGNENTFRYNSGSRCLGGGIRLGGHEIDGFVYGVDNIVYGNEFEGTGHGSIKSRKEPQGLICGNSCSG 507
            +N+I++CG+ DF +      GE IY+GTSS QW+             +G PDE N N ITGN +TP GNECVD+KEG++  ++E N CS QLDE+SGC+ SRG+ N FRYN+ S CLG G+R+GG E+DG  YG DN +Y N F     G +     PQG +CGNSC G
Sbjct:  158 DNVIQDCGVRDFVYGNSGKNGEGIYVGTSSTQWS-------------DG-PDECNDNTITGNTITPNGNECVDIKEGSTGTIVEENTCSGQLDEDSGCFGSRGDGNVFRYNTASDCLGVGVRIGGWEVDGHKYGQDNSIYENSFTRAESGGLSFFALPQGKVCGNSCQG 312          
BLAST of mRNA_S-dermatodea_contig12003.1248.1 vs. uniprot
Match: UPI00036AEC55 (right-handed parallel beta-helix repeat-containing protein n=1 Tax=Hahella ganghwensis TaxID=286420 RepID=UPI00036AEC55)

HSP 1 Score: 149 bits (375), Expect = 4.090e-38
Identity = 80/175 (45.71%), Postives = 101/175 (57.71%), Query Frame = 1
Query:    1 NNIIENCGIYDFRFQFDSVIGEAIYLGTSSNQWTTFPADSNYQEFAGEGYPDESNYNLITGNILTPRGNECVDVKEGASFNMIEHNECSEQLDEESGCYDSRGNENTFRYNSGSRCLGGGIRLGGHEIDGFVYGVDNIVYGNEFEGTGHGSIKSRKEPQGLICGNSCSGSGDCDV 525
            +N   NCG+YDF+F      GEAIY+GTSSNQW     D       G   PD SN+N I  N     GNECVD+KEGA +N++E+N CS Q D  S  +DSRG+ N FRYN      G G+RLGG+ +DG  YGV+N VYGN         +K    PQ  +CGN  S + + D+
Sbjct:  187 DNTFYNCGVYDFKFNNGGKNGEAIYVGTSSNQW-----DDGKNPTGG---PDPSNHNWIHHNKFLTNGNECVDIKEGAEYNLVEYNICSGQQDPNSAGFDSRGDHNIFRYNVSHDNKGAGVRLGGNTVDGRQYGVNNQVYGNLLYNNAQAGVKLMAAPQEKVCGNPTSDNTEGDI 353          
BLAST of mRNA_S-dermatodea_contig12003.1248.1 vs. uniprot
Match: A0A1Y0IFB0_9GAMM (Secreted protein n=2 Tax=Oleiphilus messinensis TaxID=141451 RepID=A0A1Y0IFB0_9GAMM)

HSP 1 Score: 147 bits (372), Expect = 2.170e-37
Identity = 77/164 (46.95%), Postives = 95/164 (57.93%), Query Frame = 1
Query:    4 NIIENCGIYDFRFQFDSVIGEAIYLGTSSNQWTTFPADSNYQEFAGEGYPDESNYNLITGNILTPRGNECVDVKEGASFNMIEHNECSEQLDEESGCYDSRGNENTFRYNSGSRCLGGGIRLGGHEIDGFVYGVDNIVYGNEFEGTGHGSIKSRKEPQGLICGN 495
            N+I NCG+YDF+F      GE IY+GT+  QW     D+     A    PD SN N + GN     GNECVD+KEGA +N+IE+N C  QLD  SG +D+RG+ N FRYN      G G+RLGG    G  YG++N VYGN   G GH  +K    PQ  IC N
Sbjct:  210 NLIRNCGVYDFQFAAGGKNGEGIYIGTAPEQW-----DNGKNPSAD---PDHSNGNWVWGNKFYTYGNECVDIKEGAEYNLIEYNACQNQLDPNSGGFDARGDNNIFRYNIAHTNTGAGVRLGGDLHQGRQYGINNQVYGNIIYGNGHAGVKVMSYPQDQICSN 365          
BLAST of mRNA_S-dermatodea_contig12003.1248.1 vs. uniprot
Match: A0A1G2MDL9_9BACT (F5/8 type C domain-containing protein n=1 Tax=Candidatus Taylorbacteria bacterium RIFCSPHIGHO2_02_49_25 TaxID=1802305 RepID=A0A1G2MDL9_9BACT)

HSP 1 Score: 149 bits (375), Expect = 7.540e-37
Identity = 79/168 (47.02%), Postives = 101/168 (60.12%), Query Frame = 1
Query:    4 NIIENCGIYDFRFQFDSVIGEAIYLGTSSNQWTTFPADSNYQEFAGEGYPDESNYNLITGNILTPRGNECVDVKEGASFNMIEHNECSEQLDEESGCYDSRGNENTFRYNSGSRCLGGGIRLGGHEIDGFVYGVDNIVYGNEFEGTGHGSIKSRKEPQGLICGNSCSG 507
            N I NCG YDF F      GE IY+GTS+ QW      +N         PDE+  NL+  N +  +GNEC+D+KEGA+ N+IE+N C  Q D ESG +DSRG+ N FRYN     +GGGIRLGG  ++G  YG +N VY N      +G I+ +  PQG ICGN+ SG
Sbjct:   25 NTIANCGAYDFLFNAGGKNGEGIYIGTSNKQWGDGKNPTND--------PDETKDNLVHHNYIDTQGNECIDIKEGATANIIEYNTCRGQKDSESGGFDSRGDGNIFRYNDVRGSVGGGIRLGGASVNGIQYGKNNDVYENTIVDNKNGGIRFQTTPQGKICGNTMSG 184          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12003.1248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1D2_9PHAE3.480e-9752.48Beta_helix domain-containing protein n=1 Tax=Ectoc... [more]
D8LJ29_ECTSI6.740e-9666.94FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D8LJ42_ECTSI1.280e-8667.16FirrV-1-B30 n=2 Tax=Ectocarpus siliculosus TaxID=2... [more]
D7FXR9_ECTSI1.370e-5051.93FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D7FXR8_ECTSI2.340e-5053.33FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D7FZD2_ECTSI5.740e-4846.60FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5KT05_9PHAE1.100e-4649.70Beta_helix domain-containing protein n=2 Tax=Ectoc... [more]
UPI00036AEC554.090e-3845.71right-handed parallel beta-helix repeat-containing... [more]
A0A1Y0IFB0_9GAMM2.170e-3746.95Secreted protein n=2 Tax=Oleiphilus messinensis Ta... [more]
A0A1G2MDL9_9BACT7.540e-3747.02F5/8 type C domain-containing protein n=1 Tax=Cand... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12003contigS-dermatodea_contig12003:4..3037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score152.5
Seed ortholog evalue3.5e-34
Seed eggNOG ortholog1121935.AQXX01000136_gene4114
EggNOG free text desc.Parallel beta-helix repeats
EggNOG OGs1NHJ7@1224,1SHNB@1236,COG3420@1,COG3420@2
COG Functional cat.P
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons7
Model size1035
Cds size1035
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924226.9652205-CDS-S-dermatodea_contig12003:3..991622924226.9652205-CDS-S-dermatodea_contig12003:3..99Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12003 4..99 +
1694079108.277843-CDS-S-dermatodea_contig12003:3..991694079108.277843-CDS-S-dermatodea_contig12003:3..99Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12003 4..99 +
1622924226.9750507-CDS-S-dermatodea_contig12003:766..9961622924226.9750507-CDS-S-dermatodea_contig12003:766..996Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12003 767..996 +
1694079108.2886572-CDS-S-dermatodea_contig12003:766..9961694079108.2886572-CDS-S-dermatodea_contig12003:766..996Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12003 767..996 +
1622924226.988183-CDS-S-dermatodea_contig12003:1376..14641622924226.988183-CDS-S-dermatodea_contig12003:1376..1464Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12003 1377..1464 +
1694079108.2970426-CDS-S-dermatodea_contig12003:1376..14641694079108.2970426-CDS-S-dermatodea_contig12003:1376..1464Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12003 1377..1464 +
1622924226.998581-CDS-S-dermatodea_contig12003:1617..17391622924226.998581-CDS-S-dermatodea_contig12003:1617..1739Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12003 1618..1739 +
1694079108.3054454-CDS-S-dermatodea_contig12003:1617..17391694079108.3054454-CDS-S-dermatodea_contig12003:1617..1739Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12003 1618..1739 +
1622924227.0082347-CDS-S-dermatodea_contig12003:2264..25341622924227.0082347-CDS-S-dermatodea_contig12003:2264..2534Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12003 2265..2534 +
1694079108.314361-CDS-S-dermatodea_contig12003:2264..25341694079108.314361-CDS-S-dermatodea_contig12003:2264..2534Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12003 2265..2534 +
1622924227.0165184-CDS-S-dermatodea_contig12003:2599..26311622924227.0165184-CDS-S-dermatodea_contig12003:2599..2631Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12003 2600..2631 +
1694079108.3236442-CDS-S-dermatodea_contig12003:2599..26311694079108.3236442-CDS-S-dermatodea_contig12003:2599..2631Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12003 2600..2631 +
1622924227.029624-CDS-S-dermatodea_contig12003:2840..30371622924227.029624-CDS-S-dermatodea_contig12003:2840..3037Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12003 2841..3037 +
1694079108.3334236-CDS-S-dermatodea_contig12003:2840..30371694079108.3334236-CDS-S-dermatodea_contig12003:2840..3037Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12003 2841..3037 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12003.1248.1prot_S-dermatodea_contig12003.1248.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12003 4..3037 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12003.1248.1

>prot_S-dermatodea_contig12003.1248.1 ID=prot_S-dermatodea_contig12003.1248.1|Name=mRNA_S-dermatodea_contig12003.1248.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=345bp
NNIIENCGIYDFRFQFDSVIGEAIYLGTSSNQWTTFPADSNYQEFAGEGY
PDESNYNLITGNILTPRGNECVDVKEGASFNMIEHNECSEQLDEESGCYD
SRGNENTFRYNSGSRCLGGGIRLGGHEIDGFVYGVDNIVYGNEFEGTGHG
SIKSRKEPQGLICGNSCSGSGDCDVSEEGDDEEIESTWDQPCPETLPTVP
YIDDEVPAPAPTPEEMPVAETSSPVSQLTAPTSSSGGNHRSSGCGCGVFD
LLSLHFPSATAWSRLTTSPSESKVLGGNTSSTCIGILSPQGKACCAESCG
TCGGPDCSSRSGGADSCCVSNISETAEKCSATDMVGPCLVNDGE*
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mRNA from alignment at S-dermatodea_contig12003:4..3037+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12003.1248.1 ID=mRNA_S-dermatodea_contig12003.1248.1|Name=mRNA_S-dermatodea_contig12003.1248.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3034bp|location=Sequence derived from alignment at S-dermatodea_contig12003:4..3037+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AACAACATCATCGAGAACTGCGGCATCTACGACTTCCGCTTCCAGTTCGA CAGTGTAATCGGCGAAGCAATCTACCTCGGGACTTCCAGCAACCAGGTAG GGTTTTTTGTGTTTGAACGCCGCTGGACGGCCAACGGCTTGAGTGGTAAC TGTATTGAAGCGCCTGACATTGCTCGGATGCCTCGGGGCTGAAAAGTCGC AGCGAAACCAACCATACCCCCTCCTGCTCGGGGCTACCCCACACAACACC GCCAACCCGCCTAGCTGCTACACACACAATCTTTCCAAAAACTCTACCTG GTACGCAGGATCTCAACCAGAAGGCTACCGCTAAGCGGAGGGTCCATAGA TAGCTGACGGTCTTAGGAAAAAAGCAGCCGAGTCGCCGGTGTACAGTTAG TAACAAGCCAACACCTCCTCCCCTCGGAGCTTTCTTGCGAGCCCGCTCGG ATATATTGCATTCCGCCGAATTTTGTACACCCAGGGCAAACGTACCATGC GCGGGCGAACTTAAGAGCACCCCGGTATTACCTAAGTTATGTACTGGGGG TGAGACTTAGGTGATAGCCCAAGAACAGGAAACAACTGTTCACTTTGCTT GTGCTCCCGAATCGTATCTAGAGCTCTACTTCTATACTAATATAAACCGA AGAGAAGATCGACGAGCGAGGGAGGGTAACACGATGTCACTTATCGTTGG ATGTCGCGAAAACAAAACACGAAAATCATGTTTCTGTACCTCGTTTTGTT GTTGTTTTGTCAGTGGACCACCTTCCCGGCCGACAGCAACTATCAAGAGT TTGCCGGCGAGGGGTACCCGGACGAGAGCAACTACAACTTGATCACCGGG AACATCCTCACGCCCCGCGGCAACGAGTGCGTGGACGTGAAGGAAGGTGC CTCGTTCAACATGATCGAGCACAACGAGTGCTCGGAGCAGCTGGATGAAG AGTCCGGCTGCTACGACTCAAGGGGCAACGAAAACACCTTCAGGTACAGA AATACAATGTTGGATATAGTTCTAGATATCATATCATTGCTGTTTTTGTA CATCCACCTTTGGCACGATCGAACTAAATCAGCCCCGCCCCCGCTCCAAA AGGCCACTGGACTGGACTTGAGGTGGACTGGAATGGGCTTGTTTTTCGCG ACCCCGAAAGAAGGGAAAAAAGAGAGGCCCCCAAGACGAGGGGATTCCCT TTTTTGTCCTCGGTGTGGGAACCGACGCAGCGTTGTTTTCTCTTCAAAAT CAAACATCGTCGAGCTCTACAACTAACCTCATACGAGCCAAGCCTCATGT CCTATTATTGTACATACGTCCGAACATGCAATTCAGTTAGGACAATTTCC CCCCTGCGCTCTCTTCTTCATAGGTACAACTCCGGCTCTCGATGCCTCGG GGGCGGGATTCGCTTGGGAGGGCACGAGATCGACGGGTTCGTCTACGGTG TCGACAACATCGTGAGTTTGGCTTGTCTTTCCTTCGCACACGCGGCCTTC TGCACAGCCTCTGAATAGTCTGCCTACGAATGCAACCGCCAGAACAGATG TGAAAGCACTTGCTGACAGTAGTACCGACAGTACGTTCTCTTATTTTCTA ATTACCATCCCCAGGTGTATGGCAACGAGTTCGAAGGCACTGGTCACGGC TCCATCAAGTCCAGGAAGGAGCCGCAGGGGCTGATCTGCGGCAACTCGTG CTCCGGTTCGGGTGATTGCGACGTTAGCGAGGAAGGGTGAGTGCGATAGT GGACATCGTGAAAGGATCTTTGTGTCGGACTTGAAATATATCGCATCCCG ACAGAGATGCGGCTTCAAGAAACTGTAGCGAGTGAAGGCCACGTTCGTTG ATAATCTAGAGCTGTATACAATGTCAACTATTGAGTTGGTTCGGGGTGCT CCGCATGATATTGAGCAGCCTGAATGAAGAGGTAATGCTCTCGCTTCTTC CATCAATCACGATAGACGGACGAATTGTACATTGCACACAAGTGCCCGCC ATTGTAAGTCTCGGATGTGCCAGGTAGTTGCTTCGCACACACGTTGGAAA CGTTGTCTCACCCCCCACCCGCCGCGTATGCCAGCCACCCTGGGATTGAT CATTTTCCTCGAGGCGAACCCCCCCCCTCAGCCCCAACACAATGCTCCGC TCCTCCGGGAACGTGTGGCACTTGGTCTTGACGGCTAAGGAATGGACACT TTGCATTGAGTACCTCGCCCCCGCCTCCCCGGTGCTGCGTGTCATGTGTA TCTATTTGTAGGGATGACGAAGAGATTGAGTCGACCTGGGACCAGCCCTG CCCGGAAACCCTCCCTACTGTCCCCTACATCGACGATGAAGTCCCGGCTC CCGCCCCTACTCCTGAGGAGATGCCAGTGGCTGAGACGAGTTCCCCCGTC TCTCAACTTACTGCTCCCACGTCATCGTCTGGAGGTAACCACCGCAGTTC CGGTTGTGGTTGTGGCGTATTTGACTTGCTCTCACTACATTTTCCGTCTG CGACTGCTTGGTCTCGTCTTACTACTTCGCCGTAATGTGGTTTTAAGGTT GTTGATCGACTACATGATAGTATGTATAATTTTTCCATACCCATAGCAGT GAATCTAAGGTACTTGGTGGGAACACGAGTGAAACGAAGACAGTCCATGT AAGTCAATCGGCAACTCGTTTGGGGGCTTTCGGCTTACGAGGTACTGGTA ATAGTTTCTGCTAACAACAGCAGACCAGAATCGGGACCACGTCTTCCTCG TCCGTGACGAGCATCGTGCAACGTGACTGACTGGCTCGTCTCCCCATTTT CCGAAACTGCCTTTATTTCTTTGCCCGAATACTGCAGGCAGCACATGCAT CGGCATATTGTCCCCTCAGGGCAAGGCCTGCTGCGCCGAATCGTGCGGTA CGTGCGGTGGGCCTGATTGCTCTTCCCGTTCTGGCGGCGCCGACTCCTGC TGTGTGTCCAACATATCGGAAACCGCCGAGAAGTGCTCGGCCACGGACAT GGTCGGGCCCTGTCTTGTCAACGACGGTGAGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig12003:4..3037+

>mRNA_S-dermatodea_contig12003.1248.1 ID=mRNA_S-dermatodea_contig12003.1248.1|Name=mRNA_S-dermatodea_contig12003.1248.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2070bp|location=Sequence derived from alignment at S-dermatodea_contig12003:4..3037+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AACAACATCATCGAGAACTGCGGCATCTACGACTTCCGCTTCCAGTTCGA
CAGTGTAATCGGCGAAGCAATCTACCTCGGGACTTCCAGCAACCAGAACA
ACATCATCGAGAACTGCGGCATCTACGACTTCCGCTTCCAGTTCGACAGT
GTAATCGGCGAAGCAATCTACCTCGGGACTTCCAGCAACCAGTGGACCAC
CTTCCCGGCCGACAGCAACTATCAAGAGTTTGCCGGCGAGGGGTACCCGG
ACGAGAGCAACTACAACTTGATCACCGGGAACATCCTCACGCCCCGCGGC
AACGAGTGCGTGGACGTGAAGGAAGGTGCCTCGTTCAACATGATCGAGCA
CAACGAGTGCTCGGAGCAGCTGGATGAAGAGTCCGGCTGCTACGACTCAA
GGGGCAACGAAAACACCTTCAGTGGACCACCTTCCCGGCCGACAGCAACT
ATCAAGAGTTTGCCGGCGAGGGGTACCCGGACGAGAGCAACTACAACTTG
ATCACCGGGAACATCCTCACGCCCCGCGGCAACGAGTGCGTGGACGTGAA
GGAAGGTGCCTCGTTCAACATGATCGAGCACAACGAGTGCTCGGAGCAGC
TGGATGAAGAGTCCGGCTGCTACGACTCAAGGGGCAACGAAAACACCTTC
AGGTACAACTCCGGCTCTCGATGCCTCGGGGGCGGGATTCGCTTGGGAGG
GCACGAGATCGACGGGTTCGTCTACGGTGTCGACAACATCGTACAACTCC
GGCTCTCGATGCCTCGGGGGCGGGATTCGCTTGGGAGGGCACGAGATCGA
CGGGTTCGTCTACGGTGTCGACAACATCGTGTATGGCAACGAGTTCGAAG
GCACTGGTCACGGCTCCATCAAGTCCAGGAAGGAGCCGCAGGGGCTGATC
TGCGGCAACTCGTGCTCCGGTTCGGGTGATTGCGACGTTAGCGAGGAAGG
GTGTATGGCAACGAGTTCGAAGGCACTGGTCACGGCTCCATCAAGTCCAG
GAAGGAGCCGCAGGGGCTGATCTGCGGCAACTCGTGCTCCGGTTCGGGTG
ATTGCGACGTTAGCGAGGAAGGGGATGACGAAGAGATTGAGTCGACCTGG
GACCAGCCCTGCCCGGAAACCCTCCCTACTGTCCCCTACATCGACGATGA
AGTCCCGGCTCCCGCCCCTACTCCTGAGGAGATGCCAGTGGCTGAGACGA
GTTCCCCCGTCTCTCAACTTACTGCTCCCACGTCATCGTCTGGAGGTAAC
CACCGCAGTTCCGGTTGTGGTTGTGGCGTATTTGACTTGCTCTCACTACA
TTTTCCGTCTGCGACTGCTTGGTCTCGTCTTACTACTTCGCCGGATGACG
AAGAGATTGAGTCGACCTGGGACCAGCCCTGCCCGGAAACCCTCCCTACT
GTCCCCTACATCGACGATGAAGTCCCGGCTCCCGCCCCTACTCCTGAGGA
GATGCCAGTGGCTGAGACGAGTTCCCCCGTCTCTCAACTTACTGCTCCCA
CGTCATCGTCTGGAGGTAACCACCGCAGTTCCGGTTGTGGTTGTGGCGTA
TTTGACTTGCTCTCACTACATTTTCCGTCTGCGACTGCTTGGTCTCGTCT
TACTACTTCGCCCAGTGAATCTAAGGTACTTGGTGGGAACACGACAGTGA
ATCTAAGGTACTTGGTGGGAACACGAGCAGCACATGCATCGGCATATTGT
CCCCTCAGGGCAAGGCCTGCTGCGCCGAATCGTGCGGTACGTGCGGTGGG
CCTGATTGCTCTTCCCGTTCTGGCGGCGCCGACTCCTGCTGTGTGTCCAA
CATATCGGAAACCGCCGAGAAGTGCTCGGCCACGGACATGGTCGGGCCCT
GTCTTGTCAACGACGGTGAGTGAGCAGCACATGCATCGGCATATTGTCCC
CTCAGGGCAAGGCCTGCTGCGCCGAATCGTGCGGTACGTGCGGTGGGCCT
GATTGCTCTTCCCGTTCTGGCGGCGCCGACTCCTGCTGTGTGTCCAACAT
ATCGGAAACCGCCGAGAAGTGCTCGGCCACGGACATGGTCGGGCCCTGTC
TTGTCAACGACGGTGAGTGA
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