prot_S-dermatodea_contig12.1247.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig12.1247.1
Unique Nameprot_S-dermatodea_contig12.1247.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length303
Homology
BLAST of mRNA_S-dermatodea_contig12.1247.1 vs. uniprot
Match: D8LJ92_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ92_ECTSI)

HSP 1 Score: 327 bits (838), Expect = 5.880e-109
Identity = 183/303 (60.40%), Postives = 231/303 (76.24%), Query Frame = 0
Query:    1 MRRPTRNTLLAGIWAAASVATVSADGTLAFSGDAGDVGRGGHHCHRSFPAFLWAGSNAGEQIQAGYQHAATEAHDLAAMVVDAASSAKDLEVVVIVLSQGSSFSTSGFSDANAVAVSK-ADSSLHARSATSTFPYTYPGASTLNVAVPVLAGEMGAPVQSLSLAEVVPTAVESGMLTDGKLDFVMVTVPATNTVQETDAAVHGITSTLEEASNGRFMLLWTGDMHNSGCGRRTLEAQAVFHRRLQTVALVTSSREIKMTPDILAGVLTLVLFLFIIMMGFGCVGDIECPQSFATVPPATGKEY 302
            MRRP   TL+AG+ AAAS  +VS  G    +G A +V RGG  CHRSFPAFLWAGSN G  ++ GY HAAT+A ++A +VVDAA+SAK++EVVV+VLSQGSSFSTSG SDANA A S    S LHA+SA++TFPYTYP  +TL  A+P+LAGE+  PV +L L EVVP +   G+L DGKLD ++VTVP   T++ETDA V  +TS+LEE S GRF+ LWTGD H+  CGRR+L+A++  HRRL T +L   +R IK+TPDILAG+LTL+LFLFI++ G GCVGDIECP+SF++  PA G+EY
Sbjct:    1 MRRPASRTLVAGLCAAAS--SVSYAGRALDAG-AWEVVRGGQECHRSFPAFLWAGSNTGGNLEEGYHHAATDAFEVAEIVVDAAASAKEMEVVVVVLSQGSSFSTSGVSDANAAARSADGGSPLHAKSASATFPYTYPSPTTLRNALPLLAGELEVPVHTLPLEEVVPASASLGLLDDGKLDLIIVTVPEAATIEETDATVRTVTSSLEEKSVGRFIFLWTGDFHDEACGRRSLKAESRAHRRLATESL---TRTIKITPDILAGLLTLLLFLFILVTGLGCVGDIECPKSFSSEDPAKGREY 297          
BLAST of mRNA_S-dermatodea_contig12.1247.1 vs. uniprot
Match: A0A7S2WS17_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WS17_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 3.980e-8
Identity = 42/132 (31.82%), Postives = 73/132 (55.30%), Query Frame = 0
Query:  173 GMLTDGKLDFVMVTVPATNTVQETDAAVHGITSTLEEASNGRFMLLWTGDMHNSGCGR--RTLEAQAVFHRRLQTVALVTSSREIKMTPDILAGVLTLVLFLFIIMMGFGCVGDIECPQSFATVPPATGKEY 302
            G+ ++G+ + V+  VP++    +   AV  +  TLE ++ G F ++ T +   +        LE  +   RRL + +   S++ ++MTPDILAG+LT +L   I + G  C+G I+ P  F+ VPP + +EY
Sbjct:  143 GVGSNGECEVVVCQVPSSG---DAGPAVKLLVDTLERSTRGNFAVVMTLENRFALTPEFEAALEIPSAHARRLSSAS---STQGVRMTPDILAGLLTGILLTVIALTGLCCLGSIQTPTKFSDVPPPSTREY 268          
BLAST of mRNA_S-dermatodea_contig12.1247.1 vs. uniprot
Match: A0A3F2S023_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S023_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.160e-5
Identity = 43/155 (27.74%), Postives = 72/155 (46.45%), Query Frame = 0
Query:  166 VPTAVESGMLTDGKLDFVMVTVPATNTVQETDAAVHGITSTLEEASNGRFMLLWTGD----MHNSGCGRRTLEAQAVFHRRLQTVALVTS--------------SREIKMTPDILAGVLTLVLFLFIIMMGFGCVGDIECPQSFATVPPATGKEY 302
            V +A    +L++GK D V+V +PAT ++ E DAA+   TS L  AS+G+     TG+    M       R L ++A   +    +                   S  + +TPDI+AG+L  + F+F+  +G   +  I+ P  + +     GKE+
Sbjct:  157 VASAEGQAVLSNGKTDLVVVQLPATLSLPEVDAAIQSATSILTAASHGKTAFALTGNDAEAMQIKEPIVRRLASEAKSEKSAAAIVCEAGYLVGHSAAGTAFCFSHYVNITPDIMAGLLFALFFVFLAYVGLSVLHQIQTPTRYPSHGAPRGKEF 311          
BLAST of mRNA_S-dermatodea_contig12.1247.1 vs. uniprot
Match: A0A329SEQ1_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SEQ1_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 2.120e-5
Identity = 43/157 (27.39%), Postives = 74/157 (47.13%), Query Frame = 0
Query:  174 MLTDGKLDFVMVTVPATNTVQETDAAVHGITSTLEEASNGRFMLLWTGDMHNSGCGRRTLEAQAVFHRRL--QTVALVTSSRE--------------------------IKMTPDILAGVLTLVLFLFIIMMGFGCVGDIECPQSFATVPPATGKEY 302
            +L +GK D ++V +P + ++ + D A+   +S+L  A+ G+    +TG+  NS      +E Q  F RRL  Q  A  T+S                            + +TPDI+AG+L  +LF+F+  +G   +  I+ PQ + +     GKE+
Sbjct:  164 LLANGKTDLLVVQLPESMSLSDVDTAIQTASSSLNAATGGKTDFAFTGNDANS------VETQVPFPRRLAAQAKAKKTNSTTDAALLCESGYLVGYNAAGKAFCFSHYVNITPDIMAGLLFGLLFIFLAYIGLSVLHQIQTPQRYPSRGAPRGKEF 314          
BLAST of mRNA_S-dermatodea_contig12.1247.1 vs. uniprot
Match: H3H5A7_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H5A7_PHYRM)

HSP 1 Score: 55.8 bits (133), Expect = 2.860e-5
Identity = 44/156 (28.21%), Postives = 74/156 (47.44%), Query Frame = 0
Query:  174 MLTDGKLDFVMVTVPATNTVQETDAAVHGITSTLEEASNGRFMLLWTGDMHNSGCGRRTLEAQAVFHRRL--QTVALVTSSRE-------------------------IKMTPDILAGVLTLVLFLFIIMMGFGCVGDIECPQSFATVPPATGKEY 302
            +L++GK D ++V +P +  + + DAA+   +S+L  A+  +     TG+  +S      +E Q    RRL  QT A   SS E                         + +TPDI+AG+L  +LF+F+  +G G +  I+ PQ + +     GKE+
Sbjct:  166 LLSNGKTDLLIVQLPESMLLPDVDAAIQAASSSLNSATGSKTDFALTGNDADS------VELQHPLARRLAAQTKAKANSSTEAAILCEAGYLIGYSAAGRAFCFSHYVNVTPDIMAGLLFGLLFIFMAYIGLGVLHQIQTPQRYPSHGAPRGKEF 315          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12.1247.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LJ92_ECTSI5.880e-10960.40Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2WS17_9STRA3.980e-831.82Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A3F2S023_9STRA1.160e-527.74Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A329SEQ1_9STRA2.120e-527.39Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
H3H5A7_PHYRM2.860e-528.21Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..260
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..24
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 283..302
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 261..282
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..19
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..24
score: 0.734
NoneNo IPR availableTMHMMTMhelixcoord: 261..283

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12contigS-dermatodea_contig12:52295..58372 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12.1247.1mRNA_S-dermatodea_contig12.1247.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig12 51349..58487 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig12.1247.1 ID=prot_S-dermatodea_contig12.1247.1|Name=mRNA_S-dermatodea_contig12.1247.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=303bp
MRRPTRNTLLAGIWAAASVATVSADGTLAFSGDAGDVGRGGHHCHRSFPA
FLWAGSNAGEQIQAGYQHAATEAHDLAAMVVDAASSAKDLEVVVIVLSQG
SSFSTSGFSDANAVAVSKADSSLHARSATSTFPYTYPGASTLNVAVPVLA
GEMGAPVQSLSLAEVVPTAVESGMLTDGKLDFVMVTVPATNTVQETDAAV
HGITSTLEEASNGRFMLLWTGDMHNSGCGRRTLEAQAVFHRRLQTVALVT
SSREIKMTPDILAGVLTLVLFLFIIMMGFGCVGDIECPQSFATVPPATGK
EY*
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