mRNA_S-dermatodea_contig12.1245.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig12.1245.1 vs. uniprot
Match: A0A6H5K7Y3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Y3_9PHAE) HSP 1 Score: 519 bits (1336), Expect = 6.220e-154 Identity = 516/1451 (35.56%), Postives = 670/1451 (46.18%), Query Frame = 1
Query: 46 LAPALAKAMRLDSAQAREQAAAAAHGLLGNAPRAMKQCASLSEAATEEEEGELWLPCLLRLCLDDCIGVRAEALKAAKRAVRCVGR--NATVAAWVLKRVNSRELFHDMDRVLYHHEAS----STGPAPPRPPPLAERNTSQPSPAAASIIGKTKGKRAPSAARVKHAMMAWAVHLSLADFGGLT-ARESSGDVNAYERSTNKFLAVSGRFKDPRPTVREAAVEAWGMFACTCLSDVSRRQAPKVADISVRPLMMGVLRETDARVRQAVLSSLARCVASSQPHSIKHLWKLQEKLEKAGKVGLAELIRRLAGGSHGADALHFSARMLAGLLPSFHTISGG-HPSLRQAGLALTVEVSPLLSTLQTLMKAIPPPCPEMAIPVGTAASPPKPGAPVSS-------------LDALPTWSLIARAWCGLALWAVSERSAC---LKGIAGGSGARGDV-----PTSDGGEKGKGKVG----DNRKGEETPSGT------ETGENGKTKPLSSVLDWLLSGVAPAESGS---------EAVPVAPTCTSSSSPAVDNAGAPSGTIGGLAEWKRVLLAGFVRALSSQSSFKPPREVLEGGHLDI---CQVRAWLDAPV-TTSFFDARLRGASREERAAGSSCPDCAMAEDVRDTVFTGCCGAGISSEQSVLPCRRERDHEGATPRECPLWLALLLGVLGGRCGRRSHEEQGGHLPP------LVQCTCIGGSSRAGDIESTGNSRHP----------YLPETVLAEVLDLSPGGAPAKLLSSLSRRLSTLPVERAGGKSDGEMRDELARRRSSILLALARVWRAEASRNISAWK---PLSRSPAVADTAAAAAF-GGFQA--PLNER-ESSDVSP--------ALGIGAEQ------------RPDDGLLERTADTLRLLLKAVTHFVVRSPP-DTRDL---PLGDSAPERREAAGGADGTAQSAEARRLSDRRGHDVFGA-------------IEEAFGGQAAALWRDLFEARRGHRS---GFPNLLKKLAKDCATLALCSAPVESVAESAASGKGEGLASHASSDIDGKLAAWGFAFSQSQPT-------------QRDLEEEA------RRRGRGAVAWQGKS----PRALGQDGSNGQDLAPPPPLASLPILAAVTLSLFHVSRKEAGT-TRSRAWGAGLATLAWVLTSTTSTSTETAQPP----------GGVGVAPSTESKRTPAVDGVITNLVTVRSAVASG-------------DRARTESDFEFPLDEDSLTPVSRFAAVGVSRSWAVQ------------GPSPRKGQCV----------------ASHPEAREEIRALVVGVLAVVRGLPRNVVASPGLLLALSPMLEAILDMPRSS-EADAIQSALLDTWNHTFGNL----PGGRLWESSFPPALLRCLARMAGRAEVKMPPGMAFQTDSAEALP 3813
LAPA+A+ MR++S AR+Q+A A H LLG+ P AM +C A EEE W+ CLLRLC DD + VRA+ALKAA+RAV G NA +AAWV++ + L M+RVL++ +S +T A PL + S SPAAAS KT ++A + RVKHA+ WAVHLSLAD L AR+++G + T F + G+ D R V+ AVE+W MFA + ++ + R +A KVA + +R L VL+E VR+ +SSL R VAS S+K LW K +K K GL E++R +AGGS G A H SAR+LA LLP F HP LR AGL L E+ LLS L+TLM+A P P PE A AA+P SS L+ LPT LIA AWCGLA WA+ + +A ++G G D DG KG G D RK PS + E + ++PL +L+WLL A +G+ +AVP T A ++A +P T LA WK LLA +R LS + + E G D RAWLDAPV ++S FD RL CP CA C AG QS+ E PLWL LL GVL GRCG GG +V+ C G+ R +T +R +LP++ LA L LSPGG PA+LL+SL A G++ E ++LA L+ RVWRAEA+RN++ W PLS V AA A F GG Q P +R + V+P A G+ ++ +P L TA+TLR L A P +TR P G + + A T E ++D G+ GA +E FG +AA LW LFEARR + GF L+K L+KDC A VA G G+G A S AWG FSQ+QP QR+ + A + G A+ + +S P Q+G G LAPP P +LP+LAA L+L + EA R RAW AG ATLAW LT+ + TA PP G+A E PA V L V S + +R+ + FPLD DSL PV R AV V S++ GP G V A+ P R EIR LV L+ R V ASPGLL ALSP+LEA+LD+P SS +AD++QS+LLD WN TFG L P W+++F PALLR L+ ++ RAEV+MPPG+ A P
Sbjct: 75 LAPAVARTMRMESTVARQQSAMAIHSLLGSVPGAMARC-DPGRADRPEEEDSFWVRCLLRLCFDDAVKVRADALKAAERAVSLGGLRGNAGIAAWVVEALRDGRLSQGMNRVLFYDASSQSQAATTAAAGGADPLPHASGSS-SPAAAS--DKTNPRQA-TPQRVKHAIRVWAVHLSLADPASLLRARDTAGKKRLLDVGTGLFTWLCGKSADGRDDVKVQAVESWEMFAVSMMAQIGRDEAKKVAHMFLRALSRWVLKEKGV-VREVAMSSLMRVVASFPSISLKPLWTTTWKGDKKSK-GLGEVLRDVAGGSSGEIARHHSARVLAALLPCFCLRPAEPHPLLRDAGLNLDEELPLLLSMLETLMEAFPSPIPEDAASAVDAAAPXXXPXSXSSRGAEEENCCADVRLEVLPTTGLIANAWCGLAFWAMEQAAAAGLDVEGTGKGKSGAADAGEFASDNQDGSGKGHGNTAAAASDCRKEGSGPSSSSAAPPQENEASETSQPLQVLLEWLLGVRARPSTGTSAKVTTVTEKAVPGGSTAEGRGKAAANSASSP--TTDRLARWKEALLAALIRGLSRRLDVQDNEA--EAGADDANAKLPGRAWLDAPVDSSSVFDGRL---------CAGDCPACAE-----------CLPAGGVIRQSI--------SRKWLKSETPLWLVLLTGVLRGRCGLEYRCLDGGXXXXXXXXSRVVREACHKGNPRHESGSATDGTRGGGESACQFSPVFLPQSFLAGALSLSPGGWPAQLLASL-----LTGARSAKGRTQEE--EDLA------LVVAGRVWRAEAARNLAEWNRCLPLSTDSYVG--AAGAGFDGGVQGVTPGGDRYKGGPVAPHARTVGTSAAGVDVQKXXXXXXXXXXXXQPSKNLRTDTANTLRFSLHAACSLFSHPPEGNTRSQSKEPKGATGQACDLESRAAGSTGVQNEGAAIADHDGNLRGGASGGWSEGGKRSVAVESFFGAEAARLWLGLFEARRNSPAQPKGFSKLVKALSKDCGNCAF-------VASWGPLGGGKGGAGEGGSSAVPPPGAWGLDFSQTQPPXXXXXXXXXPRTGQRESGDFASSMQGDKTAGAAAMRYDKRSNTDHPEGKKQNGG-GDALAPPXPFVALPVLAAAALALLTAAPAEADAKARGRAWKAGSATLAWTLTAAAAAPGTTAWPPPASXXXXQWSSAAGLAAGEEGATVPAE--VCQCLCAVHSCLKVAAXXXXXXXXXXXLNRSSSSGTAGFPLDGDSLAPVCRLLAVAVRTSYSTAXXXXXXXXXXDAGPESSSGSLVRASFSSSTASGTEVVVAADPAVRLEIRGLVACALSA----SRKVAASPGLLTALSPLLEAVLDVPSSSCDADSLQSSLLDVWNATFGKLNLKQPPAPAWKAAFSPALLRRLSDLSRRAEVEMPPGITLPVLDTAAAP 1457
BLAST of mRNA_S-dermatodea_contig12.1245.1 vs. uniprot
Match: D8LJ95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ95_ECTSI) HSP 1 Score: 246 bits (628), Expect = 3.890e-62 Identity = 248/684 (36.26%), Postives = 317/684 (46.35%), Query Frame = 1
Query: 2578 ERREAAGGA--DGTAQSAEARRLSDRRGHDVFGAIEEAFGGQAAALWRDLFEARRGHRS---GFPNLLKKLAKDCATLA--LCSAPVESVAESAASGKGEGLASHASSDIDGKLAAWGFAFSQSQPT--QRDLEEEA------RRRGRGAVAWQGKS----PRALGQDGSNGQDLAPPPPLASLPILAAVTLSLFHVSRKEAGT-TRSRAWGAGLATLAWVLTSTTSTSTETAQPPGG----------------VGVAPSTESKRTPAVD----GVITNLVTVRSAVASG------DRARTESDFEFPLDEDSLTPVSRFAAVGVSRSWAVQG---------PSPRKG---------------QCVASHPEAREEIRALVVGVLAVVRGLPRNVVASPGLLLALSPMLEAILDMPRSS-EADAIQSALLDTWNHTFGNL----PGGRLWESSFPPALLRCLARMAGRAEVKMPPGMAFQT-DSAEALPAFN-----REEVVDEGD----------------GVEAEATRVPQGDALGVAQLSSAG-------------FEINVAGTLPAAGARRSFMRQAQGSPA---NNATPTSKKRPPS-TIHKAPATGSKFVRVVGSGRGSTGRR--PTKRAAITTHTSLDGSQVLEPWENGSQLPDTEPDSGAEDFFPEEELFPAQGRSG 4281
E REA G A DG + ++R S +G A+E FG + A LW LFEARR + GF L+K LAKDC A + P+ A +D QP QR+ + A + G A + S P Q+G G LAPPPP +LP+LAA L+L + EA + RAW AG ATLAW LT+ GVA E PA G + + +TV A A+ +R+ + FPLD DSL PV R AV V S+A G P P G + VA+ P R EIR LV L+ R V ASPGLL ALSP+LEA+LD+ SS +AD++QS+LLD WN TFG + P W+++F P+LLR L+ ++ RAEV+MP G+ D+ A P R + EG+ G EA P+ A+G + ++AG + VAG LPA G RRSFM+QA SP+ ++ T KKR PS T KF+RVVG+GRGS G R P +RAA+TTHTSLDGSQ + PWE+GSQLPDT PDSG D EE L P RSG
Sbjct: 637 EAREAVGVAEHDGNLRGEDSRGWS--QGGKRSAAVESVFGAETARLWLGLFEARRNSPAQPKGFSKLVKALAKDCGNCAFVVSGGPLGGXXXXXXXXXXXXXXXXAVWGLDFSQTQPPSQXXXXQPRTGQREPGDFASSTQGDKTAGAAATRYDKCSNTDHPEGKKQNGG-GDTLAPPPPFVALPVLAAAALALLTAAPAEADAKAKGRAWKAGSATLAWTLTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAGVAAGEEGATIPAEVCQCLGAVRSCLTVAVAAAADSAGGGPNRSSSSGTAGFPLDRDSLAPVCRLLAVAVRTSYATAGGAAAAADAGPEPSPGSLIQAAPSSSTAVGIEVVAADPAVRPEIRGLVACALSA----SRKVAASPGLLTALSPLLEAVLDVSSSSCDADSLQSSLLDVWNATFGKINLKQPPAPAWKAAFSPSLLRRLSDLSQRAEVEMPRGITLPVLDTVAAPPTATTAQGLRGSGLSEGNKGAEGGGIAVEESARGGSEARDYSQPESAAVGDLRAAAAGGGGARGRASSGCAWNGGVAGALPAKGGRRSFMKQASRSPSPSQSHPVATPKKRSPSPTSPDGGGFSGKFIRVVGNGRGSGGNRGTPKRRAAVTTHTSLDGSQSIAPWEDGSQLPDTNPDSGP-DLPLEEVLPPPPPRSG 1312
BLAST of mRNA_S-dermatodea_contig12.1245.1 vs. uniprot
Match: D8LJ94_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ94_ECTSI) HSP 1 Score: 164 bits (414), Expect = 6.640e-40 Identity = 114/279 (40.86%), Postives = 161/279 (57.71%), Query Frame = 1
Query: 1 HTVSPRPVMETCAEMLAPALAKAMRLDSAQAREQAAAAAHGLLGNAPRAMKQCASLSEAATEEEEGELWLPCLLRLCLDDCIGVRAEALKAAKRAVRCVGR--NATVAAWVLKRVNSRELFHDMDRVLYHHEASST--------GPAPPRPPPLAERNTSQPSPAAASIIGKTKGKRAPSAARVKHAMMAWAVHLSLADFGGLT-ARESSGDVNAYERSTNKFLAVSGRFKDPRPTVREAAVEAWGMFACTCLSDVSRRQAPKVADISVRPLMMGVLRE 804
+T++P V + A+ LAPA+A+ MR++S AR+Q+A A H LLG+ P AM +C A EEE W+ CLLRLC DD + VRA+ALKAA+RAV G NA +AAWVL+ + L M RVL++ +S + G A P P L +T A+ +T ++A + RVKHA+ WAVHLSLAD L A++S+G + T F +SG+ D R V+ AVE+W MFA + ++ + R +A KVA + +R L VL+E
Sbjct: 129 NTMAPDLVAPSVAQ-LAPAVAQTMRMESTVARQQSAMAIHSLLGSVPGAMARC-DPGRADRPEEEDSFWVRCLLRLCFDDAVKVRADALKAAERAVSLGGLRGNAGIAAWVLEALRDGRLSQGMSRVLFYDASSQSQATVPGAAGEADPLPHALGSSST-------AAAPDRTNPRQA-TPQRVKHAIRVWAVHLSLADPTRLLRAKDSAGKKRLLDVGTGLFTWLSGKSADGRDDVKVQAVESWEMFAVSMMAQIGREEAKKVAHMFLRALSRWVLKE 397 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12.1245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig12.1245.1 >prot_S-dermatodea_contig12.1245.1 ID=prot_S-dermatodea_contig12.1245.1|Name=mRNA_S-dermatodea_contig12.1245.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=1594bp METCAEMLAPALAKAMRLDSAQAREQAAAAAHGLLGNAPRAMKQCASLSEback to top mRNA from alignment at S-dermatodea_contig12:34621..43782- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig12.1245.1 ID=mRNA_S-dermatodea_contig12.1245.1|Name=mRNA_S-dermatodea_contig12.1245.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=9162bp|location=Sequence derived from alignment at S-dermatodea_contig12:34621..43782- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig12:34621..43782- >mRNA_S-dermatodea_contig12.1245.1 ID=mRNA_S-dermatodea_contig12.1245.1|Name=mRNA_S-dermatodea_contig12.1245.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=9564bp|location=Sequence derived from alignment at S-dermatodea_contig12:34621..43782- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |