prot_S-dermatodea_contig11998.1242.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig11998.1242.1
Unique Nameprot_S-dermatodea_contig11998.1242.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length85
Homology
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BLAST of mRNA_S-dermatodea_contig11998.1242.1 vs. uniprot
Match: A0A6H5JN08_9PHAE (BTB domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN08_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 7.120e-12
Identity = 36/62 (58.06%), Postives = 43/62 (69.35%), Query Frame = 0 
Query:   20 SSTSRTMGKVPPGSTHCSAWSLDDDLGQLQKTMLCLLADTTLSDVCLVVEGVEVPAHKAILG 81
            S  SR   ++P  +   SAWSLDDDL  LQKTML +L D  LSDVCLVVE ++VP HKA+L 
Sbjct:   10 SGASRKSHRIPARN---SAWSLDDDLVGLQKTMLSMLTDPALSDVCLVVEDIDVPCHKAVLA 68
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11998.1242.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JN08_9PHAE7.120e-1258.06BTB domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.710.10coord: 36..84
e-value: 6.8E-6
score: 27.9
IPR011333SKP1/BTB/POZ domain superfamilySUPERFAMILY54695POZ domaincoord: 44..80

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11998contigS-dermatodea_contig11998:5207..6248 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11998.1242.1mRNA_S-dermatodea_contig11998.1242.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig11998 4961..6248 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig11998.1242.1 ID=prot_S-dermatodea_contig11998.1242.1|Name=mRNA_S-dermatodea_contig11998.1242.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=85bp
MDAQHWRPLNKGHHRSSSTSSTSRTMGKVPPGSTHCSAWSLDDDLGQLQK
TMLCLLADTTLSDVCLVVEGVEVPAHKAILGERL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011333SKP1/BTB/POZ_sf