mRNA_S-dermatodea_contig11998.1242.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11998.1242.1
Unique NamemRNA_S-dermatodea_contig11998.1242.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11998.1242.1 vs. uniprot
Match: A0A6H5JN08_9PHAE (BTB domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN08_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.150e-10
Identity = 36/62 (58.06%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:  304 SSTSRTMGKVPPGSTHCSAWSLDDDLGQLQKTMLCLLADTTLSDVCLVVEGVEVPAHKAILG 489
            S  SR   ++P  +   SAWSLDDDL  LQKTML +L D  LSDVCLVVE ++VP HKA+L 
Sbjct:   10 SGASRKSHRIPARN---SAWSLDDDLVGLQKTMLSMLTDPALSDVCLVVEDIDVPCHKAVLA 68
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11998.1242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JN08_9PHAE1.150e-1058.06BTB domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11998contigS-dermatodea_contig11998:4961..6248 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBTB/Kelch-associated
Ec32 orthologEc-11_001220.1
Exons2
Model size501
Cds size255
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11998.1242.1prot_S-dermatodea_contig11998.1242.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11998 5207..6248 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924226.0835552-UTR-S-dermatodea_contig11998:4960..52061622924226.0835552-UTR-S-dermatodea_contig11998:4960..5206Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11998 4961..5206 +
1694079107.5426366-UTR-S-dermatodea_contig11998:4960..52061694079107.5426366-UTR-S-dermatodea_contig11998:4960..5206Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11998 4961..5206 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924226.0957232-CDS-S-dermatodea_contig11998:5206..53561622924226.0957232-CDS-S-dermatodea_contig11998:5206..5356Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11998 5207..5356 +
1694079107.552675-CDS-S-dermatodea_contig11998:5206..53561694079107.552675-CDS-S-dermatodea_contig11998:5206..5356Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11998 5207..5356 +
1622924226.105063-CDS-S-dermatodea_contig11998:6143..62481622924226.105063-CDS-S-dermatodea_contig11998:6143..6248Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11998 6144..6248 +
1694079107.5628564-CDS-S-dermatodea_contig11998:6143..62481694079107.5628564-CDS-S-dermatodea_contig11998:6143..6248Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11998 6144..6248 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11998.1242.1

>prot_S-dermatodea_contig11998.1242.1 ID=prot_S-dermatodea_contig11998.1242.1|Name=mRNA_S-dermatodea_contig11998.1242.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=85bp
MDAQHWRPLNKGHHRSSSTSSTSRTMGKVPPGSTHCSAWSLDDDLGQLQK
TMLCLLADTTLSDVCLVVEGVEVPAHKAILGERL*
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mRNA from alignment at S-dermatodea_contig11998:4961..6248+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11998.1242.1 ID=mRNA_S-dermatodea_contig11998.1242.1|Name=mRNA_S-dermatodea_contig11998.1242.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1288bp|location=Sequence derived from alignment at S-dermatodea_contig11998:4961..6248+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGCCGGCCCGGGAAGGGGTGGTCAGTGTGTTGCAGCTTTGCGTCCTCATT
GTTACAATTCAGCTGTTGTCGTTGATTGTACATCAGTTGAGGCTTTGTTC
TTGGCAGGAGGCGCGCGAGTTCGAGATACGTGAGCGCACGACACACAGCA
ACACGAGACGACGAATTCTTCTCTCCAACACGCAGACAGAAGCAGCAGCA
TAGTCAGCCTGGTGGTGCAAGGCAACCACCGCATCAATCTGTCATAATGG
ACGCTCAGCACTGGAGGCCTCTGAACAAGGGTCACCACCGCAGCAGCAGC
ACCAGCAGCACCAGCAGGACGATGGGGAAGGTGCCGCCTGGCTCGACGCA
CTGCTCAGCGTGGAGCCTGGATGACGACTTGGGCCAACTCCAGAAGGTGA
GACGAAAGCACTGCTGCATGCTGCTCCTATGTTTTACAGCACAAGTATAC
GACAAATCTGAATGTACTCGGTGATACATATAATATAGAGTGCTCTAGAG
CTCTGTAGCTCAAGTACTTCTTGAACCATACAGTAAATCTCGGAGTTTTT
GGTTCATGAAACAAACGCACGCGGGAGCTTCAGAGCAAGCGCCTCGGTTA
TATCGTTGTCTGTCGCCACAAACACAGACACACACACACCCACTCCACAC
ACAACCTTACAGCTTGTTAGTTGACGATCCATCCATCCATCGCACTGAGA
AATACACCCATCAAAACCGCTGCCCTGCAACGGAACGAACGAGCGCCCAC
AGAGCCGCCCGCCGGGTGCGTCGCGTGGGCGACGAACACGCACCCGGCGA
GCGCCTGTGGTCTGGTCTGTGTGTGTTGGTGTTGCTCCGCTATTTTTCTG
AATTTTTATTTTTAGTCGATTTTTTAATTGACCGGTCTTTGCTTCTCAAC
CACGACATCATATCGTCAACCTAAAGTACTTGTACTGTACTAGGTATCCT
GCTGCTTGCTGTGCTACCACCATTCCAGCACACCAGCGAGATTCTGTTTT
TGATGGTCTGGTTGTCGCGTGTGCTGACTATTAACAGCAGTAATACAACG
TAATGTTGAGAGATCAGCTGTCTGCAATGACAAGAAATATATACCGGTAG
TAGCTATTATAGAGTCCAACCCAGTGACCCCCCCCAAACATATGACCCCC
CCCCCCCGTTGCCTCTGGAACGAATTGAATCAGACGATGCTGTGCTTGCT
GGCGGATACCACTCTGAGCGACGTGTGCCTCGTAGTTGAGGGCGTCGAGG
TGCCCGCCCACAAGGCAATTCTCGGTGAGAGATTATAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig11998:4961..6248+

>mRNA_S-dermatodea_contig11998.1242.1 ID=mRNA_S-dermatodea_contig11998.1242.1|Name=mRNA_S-dermatodea_contig11998.1242.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at S-dermatodea_contig11998:4961..6248+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGACGCTCAGCACTGGAGGCCTCTGAACAAGGGTCACCACCGCAGCAG
CAGCACCAGCAGCACCAGCAGGACGATGGGGAAGGTGCCGCCTGGCTCGA
CGCACTGCTCAGCGTGGAGCCTGGATGACGACTTGGGCCAACTCCAGAAG
ATGGACGCTCAGCACTGGAGGCCTCTGAACAAGGGTCACCACCGCAGCAG
CAGCACCAGCAGCACCAGCAGGACGATGGGGAAGGTGCCGCCTGGCTCGA
CGCACTGCTCAGCGTGGAGCCTGGATGACGACTTGGGCCAACTCCAGAAG
ACGATGCTGTGCTTGCTGGCGGATACCACTCTGAGCGACGTGTGCCTCGT
AGTTGAGGGCGTCGAGGTGCCCGCCCACAAGGCAATTCTCGGTGAGAGAT
TATAAACGATGCTGTGCTTGCTGGCGGATACCACTCTGAGCGACGTGTGC
CTCGTAGTTGAGGGCGTCGAGGTGCCCGCCCACAAGGCAATTCTCGGTGA
GAGATTATAA
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