mRNA_S-dermatodea_contig11995.1240.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11995.1240.1
Unique NamemRNA_S-dermatodea_contig11995.1240.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11995.1240.1 vs. uniprot
Match: D8LMH4_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMH4_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 1.670e-22
Identity = 40/45 (88.89%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:    1 PLLQLECGHFVHVSCGREQLKRGRPTARLTFGFMSCPVCRADKVI 135
            P ++LECGHFVHVSCGREQL RGRPTARLTFGFMSCPVCRADKV+
Sbjct:  193 PCVKLECGHFVHVSCGREQLMRGRPTARLTFGFMSCPVCRADKVL 237
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BLAST of mRNA_S-dermatodea_contig11995.1240.1 vs. uniprot
Match: A0A6H5JCA5_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCA5_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.660e-21
Identity = 40/45 (88.89%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:    1 PLLQLECGHFVHVSCGREQLKRGRPTARLTFGFMSCPVCRADKVI 135
            P ++LECGHFVHVSCGREQL RGRPTARLTFGFMSCPVCRADKV+
Sbjct:  435 PCVKLECGHFVHVSCGREQLMRGRPTARLTFGFMSCPVCRADKVL 479
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BLAST of mRNA_S-dermatodea_contig11995.1240.1 vs. uniprot
Match: X6MCA5_RETFI (RING-type domain-containing protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6MCA5_RETFI)

HSP 1 Score: 58.9 bits (141), Expect = 9.060e-9
Identity = 23/47 (48.94%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    1 PLLQLECGHFVHVSCGREQLKRGRPTARLTFGFMSCPVCRADKVIRH 141
            P ++LECGH+ H  C   ++ R  P+AR+TFGF+SCP+C+  K I+H
Sbjct:  357 PTIRLECGHYFHFMCVWNKIDRRWPSARITFGFLSCPLCK--KEIKH 401
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BLAST of mRNA_S-dermatodea_contig11995.1240.1 vs. uniprot
Match: A0A7S1KSY5_9EUKA (Hypothetical protein n=1 Tax=Percolomonas cosmopolitus TaxID=63605 RepID=A0A7S1KSY5_9EUKA)

HSP 1 Score: 56.6 bits (135), Expect = 5.920e-8
Identity = 20/47 (42.55%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:    1 PLLQLECGHFVHVSCGREQLKRGRPTARLTFGFMSCPVCRADKVIRH 141
            P +QLEC H  H +C + +++ G P AR+TFGF+ CP+C   ++++H
Sbjct:  342 PCIQLECNHIFHFACLKRKIQAGYPGARITFGFLKCPLC--QELMQH 386
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BLAST of mRNA_S-dermatodea_contig11995.1240.1 vs. uniprot
Match: UPI0007BACCDA (E3 ubiquitin-protein ligase MYCBP2-like n=1 Tax=Sinocyclocheilus rhinocerous TaxID=307959 RepID=UPI0007BACCDA)

HSP 1 Score: 56.6 bits (135), Expect = 5.990e-8
Identity = 22/45 (48.89%), Postives = 30/45 (66.67%), Query Frame = 1 
Query:    1 PLLQLECGHFVHVSCGREQLKRGRPTARLTFGFMSCPVCRADKVI 135
            P +QL+C H  H+ C R  L+      R+TFGFMSCP+C+A+ VI
Sbjct: 4355 PAIQLDCSHVFHLQCTRRVLENRWLGPRITFGFMSCPICKAEWVI 4399
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BLAST of mRNA_S-dermatodea_contig11995.1240.1 vs. uniprot
Match: A0A8C6RSC8_NANGA (RCR-type E3 ubiquitin transferase n=1 Tax=Nannospalax galili TaxID=1026970 RepID=A0A8C6RSC8_NANGA)

HSP 1 Score: 55.8 bits (133), Expect = 1.120e-7
Identity = 21/46 (45.65%), Postives = 30/46 (65.22%), Query Frame = 1 
Query:    1 PLLQLECGHFVHVSCGREQLKRGRPTARLTFGFMSCPVCRADKVIR 138
            P +QL+C H  H+ C R  L+      R+TFGF+SCP+C+  K+IR
Sbjct: 4397 PAIQLDCSHVFHLQCCRRVLENRWLGPRITFGFISCPICKVTKLIR 4442
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BLAST of mRNA_S-dermatodea_contig11995.1240.1 vs. uniprot
Match: A0A8C6RSD5_NANGA (RCR-type E3 ubiquitin transferase n=2 Tax=Nannospalax galili TaxID=1026970 RepID=A0A8C6RSD5_NANGA)

HSP 1 Score: 55.8 bits (133), Expect = 1.120e-7
Identity = 21/46 (45.65%), Postives = 30/46 (65.22%), Query Frame = 1 
Query:    1 PLLQLECGHFVHVSCGREQLKRGRPTARLTFGFMSCPVCRADKVIR 138
            P +QL+C H  H+ C R  L+      R+TFGF+SCP+C+  K+IR
Sbjct: 4505 PAIQLDCSHVFHLQCCRRVLENRWLGPRITFGFISCPICKVTKLIR 4550
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BLAST of mRNA_S-dermatodea_contig11995.1240.1 vs. uniprot
Match: X6NC07_RETFI (RING-type domain-containing protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6NC07_RETFI)

HSP 1 Score: 55.1 bits (131), Expect = 2.070e-7
Identity = 21/47 (44.68%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:    1 PLLQLECGHFVHVSCGREQLKRGRPTARLTFGFMSCPVCRADKVIRH 141
            P ++L+CGH  H  C   ++ R  P+AR+TFGF++CP+C+ +  IRH
Sbjct:  348 PTIRLDCGHHFHFMCVWNKVDRRWPSARITFGFLNCPLCKRE--IRH 392
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BLAST of mRNA_S-dermatodea_contig11995.1240.1 vs. uniprot
Match: A0A7S0V5J2_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0V5J2_9CRYP)

HSP 1 Score: 54.7 bits (130), Expect = 2.820e-7
Identity = 20/40 (50.00%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:    1 PLLQLECGHFVHVSCGREQLKRGRPTARLTFGFMSCPVCR 120
            P ++L CGH  H  C  +Q+K G P AR+TFGF+ CP+C+
Sbjct:  286 PCVRLTCGHVFHKHCLEKQVKTGYPGARVTFGFLECPLCK 325
[Close]
BLAST of mRNA_S-dermatodea_contig11995.1240.1 vs. uniprot
Match: A0A6A7G183_9CRUS (E3 ubiquitin-protein ligase MYCBP2 (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G183_9CRUS)

HSP 1 Score: 53.5 bits (127), Expect = 7.280e-7
Identity = 22/47 (46.81%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:    1 PLLQLECGHFVHVSCGREQLKRGRPTARLTFGFMSCPVCRADKVIRH 141
            P+++L CGHF H +C   +L++  P  RLTFGF++CP+C+  K I H
Sbjct:  480 PIIRLGCGHFFHRACVLLKLEKRWPGVRLTFGFITCPLCK--KPISH 524
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11995.1240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMH4_ECTSI1.670e-2288.89RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JCA5_9PHAE1.660e-2188.89RING-type domain-containing protein n=1 Tax=Ectoca... [more]
X6MCA5_RETFI9.060e-948.94RING-type domain-containing protein n=1 Tax=Reticu... [more]
A0A7S1KSY5_9EUKA5.920e-842.55Hypothetical protein n=1 Tax=Percolomonas cosmopol... [more]
UPI0007BACCDA5.990e-848.89E3 ubiquitin-protein ligase MYCBP2-like n=1 Tax=Si... [more]
A0A8C6RSC8_NANGA1.120e-745.65RCR-type E3 ubiquitin transferase n=1 Tax=Nannospa... [more]
A0A8C6RSD5_NANGA1.120e-745.65RCR-type E3 ubiquitin transferase n=2 Tax=Nannospa... [more]
X6NC07_RETFI2.070e-744.68RING-type domain-containing protein n=1 Tax=Reticu... [more]
A0A7S0V5J2_9CRYP2.820e-750.00Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A6A7G183_9CRUS7.280e-746.81E3 ubiquitin-protein ligase MYCBP2 (Fragment) n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11995contigS-dermatodea_contig11995:6209..6370 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.7
Seed ortholog evalue1.4e-17
Seed eggNOG ortholog2880.D8LMH4
KEGG koko:K10693
EggNOG free text desc.regulation of axon guidance
EggNOG OGsKOG1428@1,KOG1428@2759
EC2.3.2.27
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size162
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924226.0159414-CDS-S-dermatodea_contig11995:6208..63701622924226.0159414-CDS-S-dermatodea_contig11995:6208..6370Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11995 6209..6370 +
1694079107.5191586-CDS-S-dermatodea_contig11995:6208..63701694079107.5191586-CDS-S-dermatodea_contig11995:6208..6370Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11995 6209..6370 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11995.1240.1prot_S-dermatodea_contig11995.1240.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11995 6209..6370 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11995.1240.1

>prot_S-dermatodea_contig11995.1240.1 ID=prot_S-dermatodea_contig11995.1240.1|Name=mRNA_S-dermatodea_contig11995.1240.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=54bp
PLLQLECGHFVHVSCGREQLKRGRPTARLTFGFMSCPVCRADKVIRHRRG
GLR*
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mRNA from alignment at S-dermatodea_contig11995:6209..6370+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11995.1240.1 ID=mRNA_S-dermatodea_contig11995.1240.1|Name=mRNA_S-dermatodea_contig11995.1240.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=162bp|location=Sequence derived from alignment at S-dermatodea_contig11995:6209..6370+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTTTGCTGCAGCTGGAATGCGGCCACTTCGTGCACGTGTCGTGCGGGCG
AGAACAGCTAAAGCGAGGACGACCGACGGCACGACTAACTTTCGGATTCA
TGAGCTGCCCTGTTTGCCGTGCGGACAAGGTGATCAGACATAGGCGCGGG
GGGTTGCGGTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11995:6209..6370+

>mRNA_S-dermatodea_contig11995.1240.1 ID=mRNA_S-dermatodea_contig11995.1240.1|Name=mRNA_S-dermatodea_contig11995.1240.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=324bp|location=Sequence derived from alignment at S-dermatodea_contig11995:6209..6370+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTTTGCTGCAGCTGGAATGCGGCCACTTCGTGCACGTGTCGTGCGGGCG
AGAACAGCTAAAGCGAGGACGACCGACGGCACGACTAACTTTCGGATTCA
TGAGCTGCCCTGTTTGCCGTGCGGACAAGGTGATCAGACATAGGCGCGGG
GGGTTGCGGTAGCCTTTGCTGCAGCTGGAATGCGGCCACTTCGTGCACGT
GTCGTGCGGGCGAGAACAGCTAAAGCGAGGACGACCGACGGCACGACTAA
CTTTCGGATTCATGAGCTGCCCTGTTTGCCGTGCGGACAAGGTGATCAGA
CATAGGCGCGGGGGGTTGCGGTAG
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