mRNA_S-dermatodea_contig11985.1236.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11985.1236.1
Unique NamemRNA_S-dermatodea_contig11985.1236.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11985.1236.1 vs. uniprot
Match: D7FQQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQQ3_ECTSI)

HSP 1 Score: 197 bits (500), Expect = 5.430e-63
Identity = 92/116 (79.31%), Postives = 106/116 (91.38%), Query Frame = 1 
Query:    4 TSFSDLFKLGREVLKTDTFVLHEAKTRGQSEGRKCLVKCLFIFGLTKAERGQVGDDIRTFRKSRHPCILGLQDVIAEPEDRFCYLIYEHMAGGSLTEHLGTGRQFTEGEVKAMVSR 351
            +SFSDLFKLG+EVLKT+TFVLHE +TRG  EGRKCLVKCLF+FGLTKAER QVG+D+RTFR+++HP +L LQDVIAEPE+RF YLIYEHM GG+LTEHLGTGRQFTEGE KAM +R
Sbjct:    8 SSFSDLFKLGKEVLKTETFVLHEGQTRGD-EGRKCLVKCLFVFGLTKAERAQVGEDVRTFRRAKHPAVLALQDVIAEPEERFWYLIYEHMPGGTLTEHLGTGRQFTEGEAKAMAAR 122
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BLAST of mRNA_S-dermatodea_contig11985.1236.1 vs. uniprot
Match: A0A6H5K5V0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5V0_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 1.320e-56
Identity = 92/116 (79.31%), Postives = 106/116 (91.38%), Query Frame = 1 
Query:    4 TSFSDLFKLGREVLKTDTFVLHEAKTRGQSEGRKCLVKCLFIFGLTKAERGQVGDDIRTFRKSRHPCILGLQDVIAEPEDRFCYLIYEHMAGGSLTEHLGTGRQFTEGEVKAMVSR 351
            +SFSDLFKLG+EVLKT+TFVLHE +TRG  EGRKCLVKCLF+FGLTKAER QVG+D+RTFR+++HP +L LQDVIAEPE+RF YLIYEHM GG+LTEHLGTGRQFTEGE KAM +R
Sbjct:    8 SSFSDLFKLGKEVLKTETFVLHEGQTRGD-EGRKCLVKCLFVFGLTKAERAQVGEDVRTFRRAKHPAVLALQDVIAEPEERFWYLIYEHMPGGTLTEHLGTGRQFTEGEAKAMAAR 122
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11985.1236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQQ3_ECTSI5.430e-6379.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K5V0_9PHAE1.320e-5679.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11985contigS-dermatodea_contig11985:3883..5253 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSerine-threonine/tyrosine-protein kinase catalytic domain
Ec32 orthologEc-01_000110.1
Exons3
Model size354
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11985.1236.1prot_S-dermatodea_contig11985.1236.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11985 3883..5253 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924225.8108165-CDS-S-dermatodea_contig11985:3882..39961622924225.8108165-CDS-S-dermatodea_contig11985:3882..3996Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11985 3883..3996 -
1694079107.39462-CDS-S-dermatodea_contig11985:3882..39961694079107.39462-CDS-S-dermatodea_contig11985:3882..3996Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11985 3883..3996 -
1622924225.8204677-CDS-S-dermatodea_contig11985:4633..47761622924225.8204677-CDS-S-dermatodea_contig11985:4633..4776Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11985 4634..4776 -
1694079107.4019496-CDS-S-dermatodea_contig11985:4633..47761694079107.4019496-CDS-S-dermatodea_contig11985:4633..4776Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11985 4634..4776 -
1622924225.8293734-CDS-S-dermatodea_contig11985:5156..52531622924225.8293734-CDS-S-dermatodea_contig11985:5156..5253Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11985 5157..5253 -
1694079107.4106848-CDS-S-dermatodea_contig11985:5156..52531694079107.4106848-CDS-S-dermatodea_contig11985:5156..5253Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11985 5157..5253 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11985.1236.1

>prot_S-dermatodea_contig11985.1236.1 ID=prot_S-dermatodea_contig11985.1236.1|Name=mRNA_S-dermatodea_contig11985.1236.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=118bp
MTSFSDLFKLGREVLKTDTFVLHEAKTRGQSEGRKCLVKCLFIFGLTKAE
RGQVGDDIRTFRKSRHPCILGLQDVIAEPEDRFCYLIYEHMAGGSLTEHL
GTGRQFTEGEVKAMVSR*
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mRNA from alignment at S-dermatodea_contig11985:3883..5253-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11985.1236.1 ID=mRNA_S-dermatodea_contig11985.1236.1|Name=mRNA_S-dermatodea_contig11985.1236.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1371bp|location=Sequence derived from alignment at S-dermatodea_contig11985:3883..5253- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACGTCTTTCTCCGACCTGTTCAAGCTTGGCAGGGAGGTCCTCAAGAC
GGACACCTTTGTGCTTCACGAGGCCAAGACGAGAGGGCAGTCGGAAGGTG
CGAACATATACCACGACAACAGCAACACGGGATGCTGTGTGTGTGCTCTT
GGACTCTCTCTCTTCCCAACTCTATTTTCTTATACATTTTGTATAATGTT
TTTCCTTCGGCGACGTGCCCTCCCTACAAGTAGTGTGACAGGCCACGACT
CGGAAACAGCGCAGCGCGCTTTCCTTGCAGCACTCGTAGCCCTTTTGTCG
CTATCCCAACGCCCACCCCCGTCTCGCCCCCGCAGCCCTCACTAGAGAGC
CCGGCGGACAAGCTCGCCCGACAGTTGCCTGGCCGGCCGCGCGGCGCCGG
CGCCGGCCAACATGATTTGCATTTGCTATATTCCTCCTCCTGCCCAAAGA
ACCAGTGCCCCCTCCCCCGTCTCCCAGGCAGGAAGTGCTTGGTGAAATGT
CTCTTTATTTTCGGATTGACCAAGGCAGAGAGGGGACAGGTTGGCGACGA
CATCCGAACCTTCAGGAAGTCGAGGCACCCTTGCATTCTGGGGCTACAGG
ATGTCATTGCCGAGCCGGAGGTGCGTAGCGCCCCCCCCCCCCTCGCGGGC
AAGGGTCGCTGTATACTGCTGTGTCGTGTCGTGGCGGCGGTCGGGTTCGA
TTTGGTGTTTTGGCTTCTTTTTGCGCGCGAGTGGTTGGTTGAACTTTTTT
CGTGTCTCTCCTTTTGTGTCTTGTCTCGCCTGTTCCTTGCTTTTGTCTGT
TGTCAAAGGGGGCGTTCATTGTGTTGCTGTCTCTGCGATATTTTCGTTGG
CGAGCGCGCGTCCAGCCAGAGGCGACACCATCCCGATCTCATCCTGCGGT
GCAGGGCTTTCCATTTCATTGCAATTTACATCCTTGTGGTGATCGTCGAT
CGTCGCGCGGGGTGGCTGTGTGGAGTGTGAACAACGATGGAAGTCCTGAT
CTTGTCTTTCGAAAAACACCCAACACCCCCATCATACCTCGTGACCCTCA
GAGCGGTATGTTATGTATGATATGCACAAACGACAAGAGATTATAAAAGG
TTGTTGAATTGTGTACAGTAGTAAATAGTGTGGAATATACATGCAGAAGG
AGTGTCGTCCGTCGCGTGCGCGTGTGGCGACATAGACACATTTTCACAAC
CAGCGGGCCCGTGTCCTCTCTCCCCGTGTACCATGGCAACTAATTTACCC
GGCGCAGGATCGTTTCTGCTACCTTATCTACGAGCACATGGCCGGGGGAA
GCTTGACGGAGCACCTGGGGACCGGGCGACAGTTCACGGAGGGGGAGGTG
AAGGCGATGGTCAGCAGGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig11985:3883..5253-

>mRNA_S-dermatodea_contig11985.1236.1 ID=mRNA_S-dermatodea_contig11985.1236.1|Name=mRNA_S-dermatodea_contig11985.1236.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at S-dermatodea_contig11985:3883..5253- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACGTCTTTCTCCGACCTGTTCAAGCTTGGCAGGGAGGTCCTCAAGAC
GGACACCTTTGTGCTTCACGAGGCCAAGACGAGAGGGCAGTCGGAAGATG
ACGTCTTTCTCCGACCTGTTCAAGCTTGGCAGGGAGGTCCTCAAGACGGA
CACCTTTGTGCTTCACGAGGCCAAGACGAGAGGGCAGTCGGAAGGCAGGA
AGTGCTTGGTGAAATGTCTCTTTATTTTCGGATTGACCAAGGCAGAGAGG
GGACAGGTTGGCGACGACATCCGAACCTTCAGGAAGTCGAGGCACCCTTG
CATTCTGGGGCTACAGGATGTCATTGCCGAGCCGGAGGCAGGAAGTGCTT
GGTGAAATGTCTCTTTATTTTCGGATTGACCAAGGCAGAGAGGGGACAGG
TTGGCGACGACATCCGAACCTTCAGGAAGTCGAGGCACCCTTGCATTCTG
GGGCTACAGGATGTCATTGCCGAGCCGGAGGATCGTTTCTGCTACCTTAT
CTACGAGCACATGGCCGGGGGAAGCTTGACGGAGCACCTGGGGACCGGGC
GACAGTTCACGGAGGGGGAGGTGAAGGCGATGGTCAGCAGGTGAGATCGT
TTCTGCTACCTTATCTACGAGCACATGGCCGGGGGAAGCTTGACGGAGCA
CCTGGGGACCGGGCGACAGTTCACGGAGGGGGAGGTGAAGGCGATGGTCA
GCAGGTGA
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