mRNA_S-dermatodea_contig11977.1234.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11977.1234.1
Unique NamemRNA_S-dermatodea_contig11977.1234.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11977.1234.1 vs. uniprot
Match: D7FM35_ECTSI (tRNA-dihydrouridine synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM35_ECTSI)

HSP 1 Score: 433 bits (1113), Expect = 2.230e-142
Identity = 207/254 (81.50%), Postives = 228/254 (89.76%), Query Frame = 1 
Query:    1 DPERVREITYGMIRKVTRTPITVKCRIGVDDKDSYEEFTAFVRAVKAAGVDHVIVHARKCLLNGLSTSANRTVPPLRYDVVHRLALEFPELEIVLNGGVDNLEAVNDHLLGRGEWGGYGGGVAGVMVGRAAYFDPWTFRHTDSAVFGSTNPGFTRREIMERCVDTFNDYMQEGRLEGPERNKTRPQCLGTLLKPLGYLSSGARGSRKFRQELGRAVQADSKIDPDGEVFREVVEEAMNLMPDEILDEPVGDSAE 762
            DPERVREITYGMIRKVTRTP+TVKCRIGVDDKDSY+E T FVRAVKAAG+DHV+VHARKCLL GLSTSANRT+PPLRYDVVHRLA EFPELEIVLNGG+D+L AVN+H+ G GEWG YGGGVAGVMVGRAAYFDPWTFRHTDSAVFGS++PGFTRREIMERCVD F + MQEGR EGPE N+TR  CLGT+ KPLGYLSSGARGSR FRQEL RAVQA SKIDPD + FR+ V+ AM L+P+ +LDEPVGD+ E
Sbjct:  116 DPERVREITYGMIRKVTRTPVTVKCRIGVDDKDSYDELTTFVRAVKAAGIDHVVVHARKCLLKGLSTSANRTIPPLRYDVVHRLAQEFPELEIVLNGGIDSLGAVNEHITGTGEWGEYGGGVAGVMVGRAAYFDPWTFRHTDSAVFGSSDPGFTRREIMERCVDRFTEMMQEGRREGPECNRTRHLCLGTVTKPLGYLSSGARGSRTFRQELSRAVQAQSKIDPDTDDFRDAVDRAMALLPEGVLDEPVGDTPE 369
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BLAST of mRNA_S-dermatodea_contig11977.1234.1 vs. uniprot
Match: A0A8K1CQW7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CQW7_PYTOL)

HSP 1 Score: 199 bits (505), Expect = 1.630e-53
Identity = 123/263 (46.77%), Postives = 162/263 (61.60%), Query Frame = 1 
Query:    1 DPERVREITYGMIRKV---TRTP-ITVKCRIGVDDKDSYEEFTAFVRAVKAAGVDHVIVHARKCLLNGLSTSANRTVPPLRYDVVHRLALEFPELEIVLNGGVDNLEAVNDHLLGRGEWGGYGGGVAGVMVGRAAYFDPWTFRHTDSAVFG-STNPGFTRREIMERCVDTFNDYMQEGRLEGPERNKTRPQCLGT--LLKPLGYLSSGARGSRKFRQELGRAVQAD-SKIDPDGEVFREVVEEAMNLMPDEILDEPVGDSAEE 765
            +PERVR+I   MIR+V   T  P +TVKCRIGVDD DSYEE   F+  V +AGV H IVHARKCLLNGLST  NRT+PPL+YD V+RL  +FPEL   LNGGV +++   + L        Y   + GVM+GRAAY  PW FR  D  +FG ++NP  +RREI+   +D   D   +  +  P  +   P C+ T  L+KPL  L SGA G + F+    RA+ A  ++  P  E+ RE++E A+ ++PDE+LD  V D   E
Sbjct:  103 EPERVRDICQSMIRQVAPSTNVPEVTVKCRIGVDDHDSYEELHHFITTVASAGVTHFIVHARKCLLNGLSTHENRTIPPLKYDWVYRLKEDFPELFFTLNGGVQSIQHAKELLDTT-----Y---IDGVMIGRAAYNTPWNFRDADRLIFGEASNPNLSRREIIADYLDYAEDMQTKWGVTEPITDV--PYCMPTSALMKPLLALFSGAAGGKAFK----RAISAQFAQRGPKPEI-RELIETALAVVPDEVLDLRVEDELLE 350
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BLAST of mRNA_S-dermatodea_contig11977.1234.1 vs. uniprot
Match: K3X2Z4_GLOUD (tRNA-dihydrouridine synthase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X2Z4_GLOUD)

HSP 1 Score: 194 bits (492), Expect = 1.440e-51
Identity = 115/259 (44.40%), Postives = 153/259 (59.07%), Query Frame = 1 
Query:    1 DPERVREITYGMIRKV---TRTP-ITVKCRIGVDDKDSYEEFTAFVRAVKAAGVDHVIVHARKCLLNGLSTSANRTVPPLRYDVVHRLALEFPELEIVLNGGVDNLEAVNDHLLGRGEWGGYGGGVAGVMVGRAAYFDPWTFRHTDSAVFGST-NPGFTRREIMERCVDTFNDYMQEGRLEGPERNKTRPQCLGTLLKPLGYLSSGARGSRKFRQELGRAVQADSKIDPDGEVFREVVEEAMNLMPDEILDEPVGDSAE 762
            +PERVR+I   MIR V   T  P +TVKCRIGVDD DSYEE   FV  V ++GV H IVHARKC+L GLS   NRTVPPL+YD V+RL  +FP+L   LNGGV +++   + LL           + GVM+GRAAY  PW FR  D  +FG+  NP  +RREI+E+ +D  +D   +     P           TL+KPL  L +G  G + +++E+       S   P  E+ RE++E AM ++PDE+LD  V D  +
Sbjct:  118 EPERVRDICSSMIRNVAPSTNVPDVTVKCRIGVDDHDSYEELHHFVTTVASSGVKHFIVHARKCILKGLSPHENRTVPPLKYDFVYRLKADFPDLLFTLNGGVASIQHAKE-LLDETN-------IDGVMIGRAAYNTPWNFRDADRLIFGAERNPNLSRREIVEKYLDYADDLQAKWGSTVPLGKLNYTMRTSTLMKPLLTLFNGEYGGKAYKREI---TARWSHKGPRPEL-REMIESAMKVLPDEVLDARVEDELD 364
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BLAST of mRNA_S-dermatodea_contig11977.1234.1 vs. uniprot
Match: H3GP67_PHYRM (Dus domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GP67_PHYRM)

HSP 1 Score: 193 bits (490), Expect = 2.270e-51
Identity = 113/262 (43.13%), Postives = 149/262 (56.87%), Query Frame = 1 
Query:    1 DPERVREITYGMIRKVT----------RTPITVKCRIGVDDKDSYEEFTAFVRAVKAAGVDHVIVHARKCLLNGLSTSANRTVPPLRYDVVHRLALEFPELEIVLNGGVDNLEAVNDHLLGRGEWGGYGGGVAGVMVGRAAYFDPWTFRHTDSAVFGST-NPGFTRREIMERCVDTFNDYMQEGRLEGPERNKTRPQCLGTLLKPLGYLSSGARGSRKFRQELGRAVQADSKIDPDGEVFREVVEEAMNLMPDEILDEPVGD 753
            +PERVR+I   M R V              +TVKCRIGVDD DSYEE   FV  V +AGV H+IVHARKC+L GLST  NRT+PPLRYDVV++L  +FPEL   LNGGV +++   + L            V GVM+GRAAY  PW FR  D  +F +  NP  +RREI+ER ++   +   +     P  +         L+KPL  L +G  G + F++E+  A  A     P+    RE++E AM ++PDE+LD  V D
Sbjct:   89 EPERVRDICASMRRSVALAAEENPDRPAAEVTVKCRIGVDDCDSYEELHHFVATVASAGVRHIIVHARKCILKGLSTKDNRTIPPLRYDVVYQLKQDFPELSFTLNGGVQSIQHARELLDTTN--------VDGVMIGRAAYNTPWNFRDADRLIFNAERNPNLSRREIIERYLEYAENLQAKWGSTVPLGDSPYTMATSALMKPLLALFNGEIGGKAFKREIS-AQWAKKGPRPE---LREMIENAMKVLPDEVLDARVED 338
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BLAST of mRNA_S-dermatodea_contig11977.1234.1 vs. uniprot
Match: G4ZWL3_PHYSP (Dus domain-containing protein n=25 Tax=Peronosporaceae TaxID=4777 RepID=G4ZWL3_PHYSP)

HSP 1 Score: 193 bits (490), Expect = 4.020e-51
Identity = 114/262 (43.51%), Postives = 147/262 (56.11%), Query Frame = 1 
Query:    1 DPERVREITYGMIRKVT----------RTPITVKCRIGVDDKDSYEEFTAFVRAVKAAGVDHVIVHARKCLLNGLSTSANRTVPPLRYDVVHRLALEFPELEIVLNGGVDNLEAVNDHLLGRGEWGGYGGGVAGVMVGRAAYFDPWTFRHTDSAVFGST-NPGFTRREIMERCVDTFNDYMQEGRLEGPERNKTRPQCLGTLLKPLGYLSSGARGSRKFRQELGRAVQADSKIDPDGEVFREVVEEAMNLMPDEILDEPVGD 753
            +PERVR+I   M R V              +TVKCRIGVDD DSYEE   +V +V  AGV H+IVHARKCLL GLST  NRT+PPLRYDVV+RL  +FPEL   LNGGV +++   + L            V GVM+GRAAY  PW FR  D  +F +  NP  +RREI+ R +D       +     P  +         L+KPL  L +G  G + F++E+  A  A     P+    RE++E AM ++PDE+LD  V D
Sbjct:  117 EPERVRDICASMRRNVALAAEENPDRPAAEVTVKCRIGVDDCDSYEELHHYVSSVTEAGVRHIIVHARKCLLKGLSTKDNRTIPPLRYDVVYRLKQDFPELSFTLNGGVQSIQHARELLDTTN--------VDGVMIGRAAYNTPWNFRDADRLIFNAERNPNLSRREIIARYLDYAEGLQAKWGSTEPLSDSPYTMATSALMKPLLSLFNGEFGGKAFKREIS-AQWAKKGPRPE---LREMIESAMKVLPDEVLDARVED 366
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BLAST of mRNA_S-dermatodea_contig11977.1234.1 vs. uniprot
Match: A0A2D4CBW8_PYTIN (tRNA-dihydrouridine synthase, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CBW8_PYTIN)

HSP 1 Score: 191 bits (485), Expect = 1.470e-50
Identity = 107/253 (42.29%), Postives = 144/253 (56.92%), Query Frame = 1 
Query:    1 DPERVREITYGMIRKVTRTP------ITVKCRIGVDDKDSYEEFTAFVRAVKAAGVDHVIVHARKCLLNGLSTSANRTVPPLRYDVVHRLALEFPELEIVLNGGVDNLEAVNDHLLGRGEWGGYGGGVAGVMVGRAAYFDPWTFRHTDSAVFGST-NPGFTRREIMERCVDTFNDYMQEGRLEGPERNKTRPQCLGTLLKPLGYLSSGARGSRKFRQELGRAVQADSKIDPDGEVFREVVEEAMNLMPDEILD 738
            +PERVR+I   M+R V  T       +TVKCRIGVDD DSYEE   F+  V A+GV H +VHARKCLLNGLS   NRT+PPLRYD V+RL  +FP L   LNGGV +++     L            + GVM+GRAAY+ PW FR  D  +FG   NP  +RREI+ + +D   D  ++     P            L+KPL  L +G  G + F++ +       S   P+    RE++EEA+ ++PD++LD
Sbjct:  113 EPERVRDICASMMRHVAPTADERAPDVTVKCRIGVDDHDSYEELHHFIDTVAASGVRHFVVHARKCLLNGLSPHENRTIPPLRYDWVYRLKDDFPHLRFTLNGGVQSIQHAKQLLDATR--------LDGVMIGRAAYYTPWNFRDADRLLFGEARNPNLSRREIIAQYLDYAEDLQRKWGATEPISEIPYHMPTSALMKPLLGLFAGESGGKAFKRAIAARFADKSLPKPE---IRELIEEAIKVVPDDVLD 354
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BLAST of mRNA_S-dermatodea_contig11977.1234.1 vs. uniprot
Match: A0A5D6XXI5_9STRA (Dus domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XXI5_9STRA)

HSP 1 Score: 189 bits (481), Expect = 5.010e-50
Identity = 111/256 (43.36%), Postives = 148/256 (57.81%), Query Frame = 1 
Query:    1 DPERVREITYGMIRKV----TRTPITVKCRIGVDDKDSYEEFTAFVRAVKAAGVDHVIVHARKCLLNGLSTSANRTVPPLRYDVVHRLALEFPELEIVLNGGVDNLEAVNDHLLGRGEWGGYGGGVAGVMVGRAAYFDPWTFRHTDSAVFGST-NPGFTRREIMERCVDTFNDYMQEGRLEGPERNKTRPQCLGTLLKPLGYLSSGARGSRKFRQELGRAVQADSKIDPDGEVFREVVEEAMNLMPDEILDEPVGD 753
            DP+RVR+I + M+R V    +   ITVKCRIGVD+ DSYEE   F+  V + GV H IVHARKC+L GLS   NRTVPPL+Y+VV+RL  +FPEL   LNGGV +++     LL           + GVM+GRAAY  PW FR  D  +FG   NP  +RREI+ + ++   +         P           TL+KPL  L +G  GS+ +++E+         I P+    RE+VEEA+ L+PDE+LD  V D
Sbjct:  119 DPQRVRDICHSMMRSVEPHASSPEITVKCRIGVDNHDSYEELHEFISTVASCGVQHFIVHARKCILKGLSPHENRTVPPLKYNVVYRLKTDFPELRFTLNGGVASIQDAKQ-LLDETN-------IDGVMIGRAAYNTPWNFRDADRLIFGEERNPNLSRREIVAKYLEYAEELQATWGSTVPIGPLRYTMRTSTLIKPLLALFNGEYGSKAYKREITAQWGKKGPI-PE---LREIVEEAVKLIPDEVLDARVED 362
[Close]
BLAST of mRNA_S-dermatodea_contig11977.1234.1 vs. uniprot
Match: A0A484ECZ8_BRELC (Dus domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484ECZ8_BRELC)

HSP 1 Score: 189 bits (481), Expect = 7.730e-50
Identity = 107/262 (40.84%), Postives = 148/262 (56.49%), Query Frame = 1 
Query:    1 DPERVREITYGMIRKVT----------RTPITVKCRIGVDDKDSYEEFTAFVRAVKAAGVDHVIVHARKCLLNGLSTSANRTVPPLRYDVVHRLALEFPELEIVLNGGVDNLEAVNDHLLGRGEWGGYGGGVAGVMVGRAAYFDPWTFRHTDSAVFGST-NPGFTRREIMERCVDTFNDYMQEGRLEGPERNKTRPQCLGTLLKPLGYLSSGARGSRKFRQELGRAVQADSKIDPDGEVFREVVEEAMNLMPDEILDEPVGD 753
            DP+RVR+I   M R +              +++KCRIGVDD DSYEE   FV    +AGV H IVHARKCLL GLST  NRT+PPLRYDVV+RL  +FP+L   LNGGV +++   + L              G+M+GRAAY +PW FR  D  +F +  NP  +RREI+ER ++   +  ++     P            L+KPL  L +G  G + F++E+  A  A     P+    RE++E A+ ++PD++LDE V D
Sbjct:  122 DPDRVRDICANMRRNIELARNEKPTFPAAEVSIKCRIGVDDNDSYEELHYFVATAASAGVRHFIVHARKCLLKGLSTKENRTIPPLRYDVVYRLKQDFPDLSFTLNGGVQSIQHARELLNTTN--------ADGIMIGRAAYNNPWNFRDADRLIFDADRNPNLSRREIIERYLNYAEELQEKWGSNEPLSGSPYTMATSMLMKPLLSLFNGEFGGKAFKREVS-AQWAKKGPRPE---LREMIENAIKVLPDKVLDERVED 371
[Close]
BLAST of mRNA_S-dermatodea_contig11977.1234.1 vs. uniprot
Match: M4BKI6_HYAAE (Dus domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BKI6_HYAAE)

HSP 1 Score: 184 bits (467), Expect = 3.280e-49
Identity = 111/263 (42.21%), Postives = 150/263 (57.03%), Query Frame = 1 
Query:    1 DPERVREITYGMIRKVT--------RTP--ITVKCRIGVDDKDSYEEFTAFVRAVKAAGVDHVIVHARKCLLNGLSTSANRTVPPLRYDVVHRLALEFPELEIVLNGGVDNLEAVNDHLLGRGEWGGYGGGVAGVMVGRAAYFDPWTFRHTDSAVFGST-NPGFTRREIMERCVDTFNDYMQEGRLEGPERNKTRPQCLGTLLKPLGYLSSGARGSRKFRQELGRAVQAD-SKIDPDGEVFREVVEEAMNLMPDEILDEPVGD 753
            +P+RVREI  GM   +         +TP  +TVKCRIGVDD DSYEE   ++ +V  AGV H IVHARKC L GLST  NRT+PPLRY+VV++L  +FPEL   LNGGV +++   + L            V GVM+GRAAY  PW FR  D  +F +  NP  +RREI+ER +    D   +     P            LLKPL  L +G  G + F+    R++ A  ++  P  E+ R+++E A+ ++PDE+LD  V D
Sbjct:    2 EPDRVREICAGMRHSIALAAEANPDQTPGEMTVKCRIGVDDCDSYEELHHYIASVARAGVRHFIVHARKCFLKGLSTKDNRTIPPLRYEVVYQLKQDFPELLFTLNGGVQSIQHARELLDTTN--------VDGVMIGRAAYNTPWNFRDADRLIFSAERNPNLSRREIIERYLTYAEDLQSKWGSTKPLSESPYTMATSALLKPLLALFNGEIGGKAFK----RSISAQWARKGPRAEL-RDMIENAVKVLPDEVLDARVED 251
[Close]
BLAST of mRNA_S-dermatodea_contig11977.1234.1 vs. uniprot
Match: A0A0P1AFC1_PLAHL (Dus-domain-containing protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AFC1_PLAHL)

HSP 1 Score: 186 bits (471), Expect = 1.880e-48
Identity = 110/262 (41.98%), Postives = 148/262 (56.49%), Query Frame = 1 
Query:    1 DPERVREITYGMIRKVT----RTP------ITVKCRIGVDDKDSYEEFTAFVRAVKAAGVDHVIVHARKCLLNGLSTSANRTVPPLRYDVVHRLALEFPELEIVLNGGVDNLEAVNDHLLGRGEWGGYGGGVAGVMVGRAAYFDPWTFRHTDSAVFGST-NPGFTRREIMERCVDTFNDYMQEGRLEGPERNKTRPQCLGTLLKPLGYLSSGARGSRKFRQELGRAVQADSKIDPDGEVFREVVEEAMNLMPDEILDEPVGD 753
            +PERVR+I   M R +     + P      +TVKCRIGVDD DSYEE   +V  V +AGV H+IVHARKCLL GLS   NRTVPPLRYDVV+RL  +FPEL   LNGGV +++   + L            V G+M+GRAAY  PW FR  D  +F +  NP  +RREI+++ ++   +   +     P            L+KPL  L +G  G + F++E+  A  A     P+    RE+VE A+ ++P E+LD  V D
Sbjct:  114 EPERVRDICISMRRNIALAAEKNPDHPPAEVTVKCRIGVDDCDSYEELHHYVTMVASAGVRHIIVHARKCLLKGLSPKENRTVPPLRYDVVYRLKQDFPELYFTLNGGVQSIQHARELLNSTN--------VDGIMIGRAAYNSPWNFRDADRLIFNADRNPNLSRREIIQKYLEYAENLQDKWGSSKPLSELPYTMATSALMKPLLTLFNGEIGGKAFKREIS-AQWARKGQRPE---LREMVENALKVIPVEVLDARVED 363
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11977.1234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM35_ECTSI2.230e-14281.50tRNA-dihydrouridine synthase n=2 Tax=Ectocarpus Ta... [more]
A0A8K1CQW7_PYTOL1.630e-5346.77Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3X2Z4_GLOUD1.440e-5144.40tRNA-dihydrouridine synthase n=1 Tax=Globisporangi... [more]
H3GP67_PHYRM2.270e-5143.13Dus domain-containing protein n=1 Tax=Phytophthora... [more]
G4ZWL3_PHYSP4.020e-5143.51Dus domain-containing protein n=25 Tax=Peronospora... [more]
A0A2D4CBW8_PYTIN1.470e-5042.29tRNA-dihydrouridine synthase, putative n=1 Tax=Pyt... [more]
A0A5D6XXI5_9STRA5.010e-5043.36Dus domain-containing protein n=1 Tax=Pythium bras... [more]
A0A484ECZ8_BRELC7.730e-5040.84Dus domain-containing protein n=1 Tax=Bremia lactu... [more]
M4BKI6_HYAAE3.280e-4942.21Dus domain-containing protein n=1 Tax=Hyaloperonos... [more]
A0A0P1AFC1_PLAHL1.880e-4841.98Dus-domain-containing protein n=1 Tax=Plasmopara h... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11977contigS-dermatodea_contig11977:164..5898 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score408.7
Seed ortholog evalue2e-111
Seed eggNOG ortholog2880.D7FM35
KEGG koko:K05539,ko:K05542
EggNOG free text desc.tRNA dihydrouridine synthase activity
EggNOG OGsCOG0042@1,KOG2335@2759
EC1.3.1.88
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptiontRNA-dihydrouridine synthase
Ec32 orthologEc-01_010520.1
Exons4
Model size2364
Cds size765
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11977.1234.1prot_S-dermatodea_contig11977.1234.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11977 197..4332 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924225.6627517-UTR-S-dermatodea_contig11977:163..1961622924225.6627517-UTR-S-dermatodea_contig11977:163..196Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11977 164..196 +
1694079107.2990923-UTR-S-dermatodea_contig11977:163..1961694079107.2990923-UTR-S-dermatodea_contig11977:163..196Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11977 164..196 +
1622924225.7186513-UTR-S-dermatodea_contig11977:4332..58981622924225.7186513-UTR-S-dermatodea_contig11977:4332..5898Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11977 4333..5898 +
1694079107.3439205-UTR-S-dermatodea_contig11977:4332..58981694079107.3439205-UTR-S-dermatodea_contig11977:4332..5898Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11977 4333..5898 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924225.6771512-CDS-S-dermatodea_contig11977:196..2641622924225.6771512-CDS-S-dermatodea_contig11977:196..264Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11977 197..264 +
1694079107.3087747-CDS-S-dermatodea_contig11977:196..2641694079107.3087747-CDS-S-dermatodea_contig11977:196..264Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11977 197..264 +
1622924225.6863046-CDS-S-dermatodea_contig11977:1209..15621622924225.6863046-CDS-S-dermatodea_contig11977:1209..1562Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11977 1210..1562 +
1694079107.3168905-CDS-S-dermatodea_contig11977:1209..15621694079107.3168905-CDS-S-dermatodea_contig11977:1209..1562Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11977 1210..1562 +
1622924225.6944878-CDS-S-dermatodea_contig11977:2739..28941622924225.6944878-CDS-S-dermatodea_contig11977:2739..2894Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11977 2740..2894 +
1694079107.3245382-CDS-S-dermatodea_contig11977:2739..28941694079107.3245382-CDS-S-dermatodea_contig11977:2739..2894Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11977 2740..2894 +
1622924225.7085445-CDS-S-dermatodea_contig11977:4143..43321622924225.7085445-CDS-S-dermatodea_contig11977:4143..4332Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11977 4144..4332 +
1694079107.3342197-CDS-S-dermatodea_contig11977:4143..43321694079107.3342197-CDS-S-dermatodea_contig11977:4143..4332Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11977 4144..4332 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11977.1234.1

>prot_S-dermatodea_contig11977.1234.1 ID=prot_S-dermatodea_contig11977.1234.1|Name=mRNA_S-dermatodea_contig11977.1234.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=255bp
MIRKVTRTPITVKCRIGVDDKDSYEEFTAFVRAVKAAGVDHVIVHARKCL
LNGLSTSANRTVPPLRYDVVHRLALEFPELEIVLNGGVDNLEAVNDHLLG
RGEWGGYGGGVAGVMVGRAAYFDPWTFRHTDSAVFGSTNPGFTRREIMER
CVDTFNDYMQEGRLEGPERNKTRPQCLGTLLKPLGYLSSGARGSRKFRQE
LGRAVQADSKIDPDGEVFREVVEEAMNLMPDEILDEPVGDSAEEGASGLH
VLET*
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mRNA from alignment at S-dermatodea_contig11977:164..5898+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11977.1234.1 ID=mRNA_S-dermatodea_contig11977.1234.1|Name=mRNA_S-dermatodea_contig11977.1234.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5735bp|location=Sequence derived from alignment at S-dermatodea_contig11977:164..5898+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GATCCTGAGCGGGTGCGAGAGATCACGTACGGGATGATCCGCAAGGTCAC
CCGAACACCAATCACGGTCAAGTGCAGAATAGGCGTCGACGACAAGGACT
CGTGAGTACCAAATCCCGGCACGGGAAGGCCCGTATCGCTCCGCGTACAA
TCTTTTGGGAAAACCAGGGACGCAAATTCTCTCTGGCTCGAGTTTGTATA
CGTACAGTAGTATCATATGACCCCGTGGGTGGACTCCCAAGGGGCAAGTA
AATCCTGGTGTTGTGGTTATTCTGTCAAGCGGGCGCATGTTGACCACTCT
TAAGGCTGTGCCTGTGTCTATATTTTTGCAGAGAAGGTCAAGCTCGCGTC
TCTACGCGGTAGGTGGCATTGCTACTCGGCGGAGCACTGCCACACGTATG
TTATGCAAGCTTGCGTTTGAACCGGGGAACTTTGCTCTCGAGGGCAAACC
CGCGCCAATTCTTGCCTTACACCCCTCCCCTTAAAGGTACAATGGTTTCA
AAAACATAGAGCGAGCGTTGGGGTCCCACGTTTTCAGGAGGGAATATGGT
CCAAGCTACAGTACACCTATGGAGGCTGGCTCACTTTGTTGCTTGTGATG
CTATGGTGTCATGTCATGTATGATGTTATATGGTTTATGCTACAGAGTCC
TGGTCGTGTATCTTTGATGTGCTTTTGTGAGCCTAGAAGATAAAAATATT
CCTTTTTATCTCGTATTTTTTGTCAGATTGGTTTATCTTTTGTTTGGATT
GCGCCCTTGTGTTCTCCCCTCCCCTCCCCTCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCTCCCCTTTTCCCCCGGGTACAAGGGGTTC
CCGCGCTTTTTTGGGGGTTCCCAGCCACGGGNNNNNNNNNNGTGACGGGT
GTTTTGTTGTTTGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTGTTCGTCTTTCCCCCTCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCTCCCCACACCTCACACGCCAACTTCCGATTTTGCCTCAGGTAC
GAGGAGTTCACGGCGTTTGTGCGGGCTGTCAAGGCAGCGGGTGTAGACCA
CGTCATCGTTCACGCGCGAAAGTGCCTGCTTAACGGACTGTCAACCTCGG
CCAATCGCACAGTGCCTCCCCTGCGATACGACGTCGTGCACCGATTAGCG
CTCGAGTTTCCCGAGTTGGAAATAGTGCTCAACGGGGGCGTGGACAACCT
TGAGGCCGTCAACGACCACCTTTTAGGAAGGGGGGAGTGGGGGGGCTACG
GCGGGGGCGTAGCCGGGGTCATGGTGGGGCGCGCGGCGTACTTCGACCCG
TGGACGTTCCGACATACCGACAGCGCCGTTTTCGGCTCGACAAACCCAGG
TGTGTGGCCCTTCAGATTCTTCCTTCGTACCAGTACTTTTTTTCTTTTTT
ATTACAGCAGGTCCAAGTTGAATTCCGAGGCATGTCCCCTCTGTTTCCGA
GAGTCATGTCAATTCCTTCTTATTATGTACCAGGTACCTGGTACTTTATA
CTATATACTATATACTTATACTATATAGGTAATTCCGTAGAGTTTTTTCG
GTCTCTCGATTGTTCATCTGACCACGAGCGAGCGGGATCGGCAACTACTG
GTGGGCCGGTCGGTTGTATGTGTGGTTATCAATCAATCAAATCAATCAAT
CAGTCAATCAGCTAATCAATCAATCAACCAATCAATCAATAAAATCAATC
AACTTGCGTTTGTATTGTTTGCGTATTTGCGTGTATTTTGTGCGTGTGCG
TGTGCTTGTCCGTGACCGTGTATGTGTGTGTGCCTCCCCGATGCGAGCAT
GGCCTCCCCTCGTGGCTGCGTGCCACCCCCGCCTTCCCCGACTTTCGTTG
TTAGTCCTTTCTATTACGGGGGACTAGACCATAGTTAACTTTAACAGGTT
CAATTTTGCCACAAGTCTCAACCTAGAAAACATCAAAATAGGCCGGAATT
ATCGAGATTTCAAGGCCGATGTTCATGAATATTGAATATGGCCATAATCT
CGTGGTTTTGTTTGTCGTGATATTTTTGTTGTTGTGTGAGTAAATCATGG
TCGGAATAGTCGGGTATTGTTGGCCATGAGATTTGCACCTGTTACGGGCC
GTTTCTGTCGGAGCCGATTTTCTCACGAAAATTAACACCTCACGAAACGT
GAGTTTTTCAAACACGCCTTTTTACAAACCTCACGTTTCGTGCATTGAAC
CCTCACGTTTTTTTTCGTGAGTGTTTCAATGCACGAAACGTGAGGCGACT
TCTTTTTTAAGTTATTTTTTTTGCCGCGAAACGGCGGAGATAAAAATAAA
CGGCACACTGGCTCTCTCACGTTCGTGAGGGAACAGGCGCTTGATAGAAA
CGGCCCTAACGACGTTCCTCCTTTCTAGGTAAAAACCGGGTTGGTGGTGT
AGCACGGTCATGACAAACTGTTGCGTTGACGTTACATTCATGCCTGGTGT
CGTATTCCTTCCTTGTGTATTAAATGCCCTGGATTGGACTCTTCCCCTGT
GCCCTCCGCCCCCCCCCCTCCCGCAGGCTTCACCCGGCGCGAGATCATGG
AGCGCTGCGTGGACACGTTTAACGACTACATGCAGGAGGGTCGACTGGAG
GGGCCCGAGAGAAACAAAACCCGGCCTCAATGCCTGGGAACTCTGTTGAA
ACCCCTGGGATACCTCTCTTCCGGCGCGAGGGTGAGGGAATGTCGGTTTT
AATTTTTACGCGCGTTTTGATTGGGGTGTGTTTCCCAATGCTGGAATGTG
GATTATCAGGGGGGGGTGTCACAGCGTCACAGCCCCTACCCCCCTAAGGT
AGTAACTGCCTCCTTCTATGCACGTGCTGTCCGCATACGTCGGGTGCCCA
GAGACGCATCAGGGTACTGCGCCCCCGAGAGTGTGGCCAAGCCATGCTAA
CAACCCTGGTGTGTTGTGTCCTCCTCACCGTCCGTACACGAAGGGATCTG
ATCGATTAAGGACGCCCGTGTTGCCAGTTTTTACTGGAACTTCGGCGGGA
AGACAAAGAGGACTCCGCGTAACTCTATACGACGGGATATCTGATTAATT
AATACAACAAGGAACCATTTTTAATATGATAGCGATTTGAAGAGAAGGAT
TCTGTAACACGAATTTTTGAGGCCCGAGATGAGGCCGATTTCGTATACTA
AACTCCTATACGATTTTGTGTTTTTTTTTTAGTGCGCCAGTTTTGAAAGA
CAAACGATGGTACCTGTGAGCTGTGAGAGACCCGAATCGGTTTTTACCTG
GGTTGCGCTCGCCCCGACAGCCGATGCGGTCGTGTCGTGTTGCTTGTCTG
CGCCGCTCACTTCATCGTGTGACGCGTCGGGGGTCGGGGCAGGCCTTAAC
CCAAGGATATTTTCATGAGCACTTTATCCATACATATTTTATGAATACTG
CCTTGAACGTTTTTTGTTGTTGTTGTAATACATATGGATTTAGAATTGAA
AAAACAAAAAAATTACTCTGAAACTGAAATCCCATAAAAGTCTTGATGCC
AACTTGTGAAGCCAAAGGCACACCTCACGTTCGTAGCCATGGCTATACCT
ACTATTGTAGTACGGAGGTACACTAGAGTCAAGTAATCGGGACCAAATCT
CATGACCATGAAATACCTGACTATTCCGACCAGGAATTCCCAAACAACAA
GAATCTCATGAAAAAGAAAGAAAAAAAACACGAGATATGGCCATACACAA
TAACATCGACCTTGAAATCTCGATAATTCCAGCGTATTTTGATTTTTACA
GTTTGAGAATTGTGGCAAATTTGGACCTGATTAGTGATTACTGTGTGGCT
CCGTAATAGTATGAATAGTAAATAAGTAGTACTAGAGAAAATACTCGCCT
CGGATACAACCCCTCACGCAGGGTCCCTTAATCTTTTATTTTATTTTCTG
TTCTGCGTCCGTTTGCGAAAACGAACACAGGGAAGCAGGAAGTTCCGGCA
GGAGCTAGGCCGCGCCGTGCAGGCCGATTCGAAAATCGATCCGGACGGCG
AAGTCTTTCGGGAAGTGGTCGAGGAAGCCATGAACCTCATGCCCGATGAG
ATTCTCGACGAGCCCGTCGGGGACTCGGCCGAGGAGGGTGCATCCGGCCT
CCACGTTCTTGAGACGTGATGTGTGGATCATTTTTTGTAGGTGGAAGTAG
CTGTTTCTCTCTTGGCGGATGCTATACTATCTTACCAGTATATATTATTA
TTAGTCCCGTGTATGTATTCCTCGATTTATCATCTGACAAAGAGCGGGAT
CGGTAACCATCGGAGGGGCCGGTTGGTTTTTCACGAGTGTGAGGGGTCAA
ACCATTTTTTTTTGTTTTTAAAAATAATAGGCCAGCCTGCTCGTTGCTTA
TATCAAACATGGATACATCGGGTTTCATCCACCACGCAGCAGGTGCCTCG
GGTTTTTTTGCACATTTCTTTCTGGGTGTTCGTTCACCACTCATGTCGCG
GGTGTTTCGTATTTCATGTCGGCCGCGTGTTTTTTTGTCACGTTTTGGGA
GACAGACAGACTTCGCGATTTTTTTTGTCTCACATTTTCGGGAATTTTAC
CACACTTGTACAAGTACGAGAAATAGTATTTCGGAGTTGTGAGGAGGATA
GTGCGGAGCGAGGCCGGGGTTGTTTGGTCCGGGATCGCCTGCGGAATCTC
CGATTGGGATCAAAGTGTCAGGTGTCGTGTATCGGAGGGCTGCGGCAAGG
TTCGGAGAGAGTAGAGGGTGGAGAAGAGAGATTGGGGCGTACCCCGCTCG
GCCCCCGGGGAGGACTATCGTCCTTCTCCGGGTGGGATTGCCCGTGGATG
TCCATCCCCCGAAAGAGTCGGATTCGGGGATTCCGGGGTGCCGGGCTTGT
TGGCGGCCACGCCTGGAAATACCTCGGATTGAGAGTCGGGAGGTCGTGTA
TGTTCCCCCCATGGATCGTTGCCTGCTGGCGCAGTGCACGATCGAGTAGG
TCGTGGCTCTCATTGGGCGTGTGAACGCGCTACCATGGTGTCCACAACAG
GATTCATGACGAAAATGTATCAATTTTGGCGATAGTGAACCTTTTAAGGG
GGTGAAAACTCAGCACTACTTTTTCGTTTTTTCTCCGTGCGCATCTACGA
GGGGCGCGGGGGGGATGTAGACGCCGGCGGCGGCGGCCACCGAGACGATT
ATTTCGGCGCACAGAACGTCTGCAGGACATGCGAATGTCAACAATGACAA
CTATCATACCAACGGGACGTTCTCCGCAAAGCTTGACACGCAAACGGCAC
ACGGCACATACTGGGTGGAGGTGATACTGGTCGGTTGGATTCAGTGCCTG
AATTCCCCGGCGCGGTACGGAACAATCGACTCTGCAGAGTTAGTACGGCA
CGTTCGAGAGCGAGAACGATCGAAAGGGGACAACACCGACATATAATTCA
AACAGGAAAAACGCTCAGAGGCGTAATGCTTCTTCTTCACTCATGCTCAC
CCGGATAAAAATTTTGTACACAACGCAGCAAAGACCCATGTCCAGCCCAG
CGTTCAATCGACGCACCCACTGCGTCACAGCCCGCCACACGCCCCTAAAA
TAAGCTCGGAAAGCTTGGCTTCAGTGAGTCCAGACTACAAGTACATTTCT
ACGAGGGACTCTTCTCCTCAGAAACAATACGACGATATGCTAAGTCTCTC
CTTTCACTCGTTGTTCTTGGCCTTCTTGGAGACAT
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Coding sequence (CDS) from alignment at S-dermatodea_contig11977:164..5898+

>mRNA_S-dermatodea_contig11977.1234.1 ID=mRNA_S-dermatodea_contig11977.1234.1|Name=mRNA_S-dermatodea_contig11977.1234.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1530bp|location=Sequence derived from alignment at S-dermatodea_contig11977:164..5898+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATCCGCAAGGTCACCCGAACACCAATCACGGTCAAGTGCAGAATAGG
CGTCGACGACAAGGACTCATGATCCGCAAGGTCACCCGAACACCAATCAC
GGTCAAGTGCAGAATAGGCGTCGACGACAAGGACTCGTACGAGGAGTTCA
CGGCGTTTGTGCGGGCTGTCAAGGCAGCGGGTGTAGACCACGTCATCGTT
CACGCGCGAAAGTGCCTGCTTAACGGACTGTCAACCTCGGCCAATCGCAC
AGTGCCTCCCCTGCGATACGACGTCGTGCACCGATTAGCGCTCGAGTTTC
CCGAGTTGGAAATAGTGCTCAACGGGGGCGTGGACAACCTTGAGGCCGTC
AACGACCACCTTTTAGGAAGGGGGGAGTGGGGGGGCTACGGCGGGGGCGT
AGCCGGGGTCATGGTGGGGCGCGCGGCGTACTTCGACCCGTGGACGTTCC
GACATACCGACAGCGCCGTTTTCGGCTCGACAAACCCAGGTACGAGGAGT
TCACGGCGTTTGTGCGGGCTGTCAAGGCAGCGGGTGTAGACCACGTCATC
GTTCACGCGCGAAAGTGCCTGCTTAACGGACTGTCAACCTCGGCCAATCG
CACAGTGCCTCCCCTGCGATACGACGTCGTGCACCGATTAGCGCTCGAGT
TTCCCGAGTTGGAAATAGTGCTCAACGGGGGCGTGGACAACCTTGAGGCC
GTCAACGACCACCTTTTAGGAAGGGGGGAGTGGGGGGGCTACGGCGGGGG
CGTAGCCGGGGTCATGGTGGGGCGCGCGGCGTACTTCGACCCGTGGACGT
TCCGACATACCGACAGCGCCGTTTTCGGCTCGACAAACCCAGGCTTCACC
CGGCGCGAGATCATGGAGCGCTGCGTGGACACGTTTAACGACTACATGCA
GGAGGGTCGACTGGAGGGGCCCGAGAGAAACAAAACCCGGCCTCAATGCC
TGGGAACTCTGTTGAAACCCCTGGGATACCTCTCTTCCGGCGCGAGGGCT
TCACCCGGCGCGAGATCATGGAGCGCTGCGTGGACACGTTTAACGACTAC
ATGCAGGAGGGTCGACTGGAGGGGCCCGAGAGAAACAAAACCCGGCCTCA
ATGCCTGGGAACTCTGTTGAAACCCCTGGGATACCTCTCTTCCGGCGCGA
GGGGAAGCAGGAAGTTCCGGCAGGAGCTAGGCCGCGCCGTGCAGGCCGAT
TCGAAAATCGATCCGGACGGCGAAGTCTTTCGGGAAGTGGTCGAGGAAGC
CATGAACCTCATGCCCGATGAGATTCTCGACGAGCCCGTCGGGGACTCGG
CCGAGGAGGGTGCATCCGGCCTCCACGTTCTTGAGACGTGAGGAAGCAGG
AAGTTCCGGCAGGAGCTAGGCCGCGCCGTGCAGGCCGATTCGAAAATCGA
TCCGGACGGCGAAGTCTTTCGGGAAGTGGTCGAGGAAGCCATGAACCTCA
TGCCCGATGAGATTCTCGACGAGCCCGTCGGGGACTCGGCCGAGGAGGGT
GCATCCGGCCTCCACGTTCTTGAGACGTGA
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