mRNA_S-dermatodea_contig11951.1222.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11951.1222.1
Unique NamemRNA_S-dermatodea_contig11951.1222.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11951.1222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11951contigS-dermatodea_contig11951:3521..4209 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size689
Cds size426
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11951.1222.1prot_S-dermatodea_contig11951.1222.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11951 3738..4163 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924224.742053-UTR-S-dermatodea_contig11951:3520..37371622924224.742053-UTR-S-dermatodea_contig11951:3520..3737Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11951 3521..3737 +
1694079106.6750164-UTR-S-dermatodea_contig11951:3520..37371694079106.6750164-UTR-S-dermatodea_contig11951:3520..3737Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11951 3521..3737 +
1622924224.7680826-UTR-S-dermatodea_contig11951:4163..42091622924224.7680826-UTR-S-dermatodea_contig11951:4163..4209Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11951 4164..4209 +
1694079106.6934328-UTR-S-dermatodea_contig11951:4163..42091694079106.6934328-UTR-S-dermatodea_contig11951:4163..4209Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11951 4164..4209 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924224.758006-CDS-S-dermatodea_contig11951:3737..41631622924224.758006-CDS-S-dermatodea_contig11951:3737..4163Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11951 3738..4163 +
1694079106.6842246-CDS-S-dermatodea_contig11951:3737..41631694079106.6842246-CDS-S-dermatodea_contig11951:3737..4163Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11951 3738..4163 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11951.1222.1

>prot_S-dermatodea_contig11951.1222.1 ID=prot_S-dermatodea_contig11951.1222.1|Name=mRNA_S-dermatodea_contig11951.1222.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=142bp
MHILSSLYDVQQIDNPVLLRLPINGREDTCLTPGTNSTCPRQLCSSVEED
SSAANGWSHHKQPIPDARRSSNLAGKEFGYPQKFAKAKEGSTDQSTVKPK
SGGGKPARFRKIPDRLVQVIDQSICQARYKPDPRLAWPDLS*
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mRNA from alignment at S-dermatodea_contig11951:3521..4209+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11951.1222.1 ID=mRNA_S-dermatodea_contig11951.1222.1|Name=mRNA_S-dermatodea_contig11951.1222.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=689bp|location=Sequence derived from alignment at S-dermatodea_contig11951:3521..4209+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGACAAAGGCCTCACCGCGACAGAACGGCCAGCTATCTAATGCAACACAC
TGACTGTTACTCGCTTTCCAGCCGTGTGGCGGGGCCCGCCTCAAACGAAG
CGAAACACAACCGCGGCAGAGGGTCCTGGAAACAACCTTTCGCATCTCTG
CGCCCATGCCCGGCCGCCGCAGCGCCCACTTAGTTCCCCGTCACACACAA
AAACGATAGCGATTATAATGCACATCCTTTCATCGCTCTACGACGTACAG
CAAATCGACAACCCCGTGCTGCTGCGACTGCCGATCAACGGTAGAGAGGA
CACGTGTCTGACTCCGGGGACCAACAGCACGTGCCCCCGGCAGCTTTGTT
CCAGCGTGGAAGAAGACAGCAGCGCTGCCAACGGATGGTCCCATCACAAG
CAACCAATACCCGATGCCCGCAGAAGCTCAAACCTCGCCGGGAAGGAGTT
TGGTTACCCTCAAAAATTCGCGAAGGCGAAGGAAGGGTCGACAGACCAAT
CTACCGTGAAACCAAAATCGGGGGGGGGAAAACCGGCCCGTTTTCGAAAA
ATACCCGACCGGCTCGTTCAAGTCATCGACCAGTCGATATGCCAGGCGCG
ATACAAACCCGACCCCCGCCTGGCCTGGCCTGACCTGTCCTGACCTGACT
TGACCTTCCCCGATCCGATCGGATCCGACTCGACCCTCT
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Coding sequence (CDS) from alignment at S-dermatodea_contig11951:3521..4209+

>mRNA_S-dermatodea_contig11951.1222.1 ID=mRNA_S-dermatodea_contig11951.1222.1|Name=mRNA_S-dermatodea_contig11951.1222.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=852bp|location=Sequence derived from alignment at S-dermatodea_contig11951:3521..4209+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCACATCCTTTCATCGCTCTACGACGTACAGCAAATCGACAACCCCGT
GCTGCTGCGACTGCCGATCAACGGTAGAGAGGACACGTGTCTGACTCCGG
GGACCAACAGCACGTGCCCCCGGCAGCTTTGTTCCAGCGTGGAAGAAGAC
AGCAGCGCTGCCAACGGATGGTCCCATCACAAGCAACCAATACCCGATGC
CCGCAGAAGCTCAAACCTCGCCGGGAAGGAGTTTGGTTACCCTCAAAAAT
TCGCGAAGGCGAAGGAAGGGTCGACAGACCAATCTACCGTGAAACCAAAA
TCGGGGGGGGGAAAACCGGCCCGTTTTCGAAAAATACCCGACCGGCTCGT
TCAAGTCATCGACCAGTCGATATGCCAGGCGCGATACAAACCCGACCCCC
GCCTGGCCTGGCCTGACCTGTCCTGAATGCACATCCTTTCATCGCTCTAC
GACGTACAGCAAATCGACAACCCCGTGCTGCTGCGACTGCCGATCAACGG
TAGAGAGGACACGTGTCTGACTCCGGGGACCAACAGCACGTGCCCCCGGC
AGCTTTGTTCCAGCGTGGAAGAAGACAGCAGCGCTGCCAACGGATGGTCC
CATCACAAGCAACCAATACCCGATGCCCGCAGAAGCTCAAACCTCGCCGG
GAAGGAGTTTGGTTACCCTCAAAAATTCGCGAAGGCGAAGGAAGGGTCGA
CAGACCAATCTACCGTGAAACCAAAATCGGGGGGGGGAAAACCGGCCCGT
TTTCGAAAAATACCCGACCGGCTCGTTCAAGTCATCGACCAGTCGATATG
CCAGGCGCGATACAAACCCGACCCCCGCCTGGCCTGGCCTGACCTGTCCT
GA
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