mRNA_S-dermatodea_contig11913.1202.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11913.1202.1
Unique NamemRNA_S-dermatodea_contig11913.1202.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11913.1202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11913contigS-dermatodea_contig11913:736..1825 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size284
Cds size270
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11913.1202.1prot_S-dermatodea_contig11913.1202.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11913 750..1825 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924223.3349485-UTR-S-dermatodea_contig11913:735..7491622924223.3349485-UTR-S-dermatodea_contig11913:735..749Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11913 736..749 +
1694079105.679082-UTR-S-dermatodea_contig11913:735..7491694079105.679082-UTR-S-dermatodea_contig11913:735..749Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11913 736..749 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924223.346023-CDS-S-dermatodea_contig11913:749..7651622924223.346023-CDS-S-dermatodea_contig11913:749..765Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11913 750..765 +
1694079105.6926067-CDS-S-dermatodea_contig11913:749..7651694079105.6926067-CDS-S-dermatodea_contig11913:749..765Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11913 750..765 +
1622924223.354964-CDS-S-dermatodea_contig11913:1571..18251622924223.354964-CDS-S-dermatodea_contig11913:1571..1825Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11913 1572..1825 +
1694079105.704821-CDS-S-dermatodea_contig11913:1571..18251694079105.704821-CDS-S-dermatodea_contig11913:1571..1825Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11913 1572..1825 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11913.1202.1

>prot_S-dermatodea_contig11913.1202.1 ID=prot_S-dermatodea_contig11913.1202.1|Name=mRNA_S-dermatodea_contig11913.1202.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=90bp
MAAVQGADSAVVHKVQRLLIARTKSNKYYAQEEVEVELGLERGDIGKFYF
SMHHGEGGMKKKATTLALLREAGVFRVMGRKPMGRGTKFR
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mRNA from alignment at S-dermatodea_contig11913:736..1825+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11913.1202.1 ID=mRNA_S-dermatodea_contig11913.1202.1|Name=mRNA_S-dermatodea_contig11913.1202.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1090bp|location=Sequence derived from alignment at S-dermatodea_contig11913:736..1825+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCAACCACGGCGCCATGGCAGCTGTGCAAGGTATGTACATGATCCTATGG
CTCAGGACTATCTGCCTGGGGGGATTGCATTACATGCGGGACGGCGCCAA
GGAAATCGCATTGGGGTCCAGGACCGTTCCTCGTTCCGACCAGCTATACA
TGTCTGATGCACGGTCATAACCCTCCGCGCACCTCCTGTGCCCCATGGCC
CTCCCCGGAGCTCGGGGCTGGTAGAATCAGTCCCAGACGCGTGTGCATAT
GTATAGCCCATGGTAAACAACGCAGGTCCCCGGCGGGGACAAGCTCACAT
CTCTCTTGTGGAAATAGTTGTTTTTTTCGGGCCTAGGAAGTCTCTGTGTT
GTGCGGCGCTTACAGCAGTAGGAACAGCAGCATGGACAGCACCAGGGTGT
CCTCCGCTCTCGCCTGGCATCATCCCCGAGACCGCGGTTTTGCGCAGCAG
CCCTCTCTAAACCCTGTTGGGCCATCCTCCTAAGATAACAACCTTCTACA
TCCTGTGTCGTCTAAGAAAGTTGACGGAATGTATGTGGTCACCTTTCTGT
GGCTTTTTCGGTGTGATCGGGGTGTTTGCACAAGCCCCCCGCTCAGCCAA
AACTCCGGCCGCAGAACCTCGGTACATGACCTTCGAAGCCCAAAACTTCC
TTCGGAACAAATATACATGACTACTGTATGAACCCTGTCGTTTGGAACGT
GTGCAAATAAATACATCAGAGGTCGCCGACCTCGAATTGTTGATACAAAA
AAAAAAATCTCAAGGCCAAAACTAAATAAGCGTTCTCGCATAATTTTTAT
TATATCTTCTACCGATCAACCTGTTTTTTCCTGCAGGTGCCGACTCCGCC
GTGGTGCACAAAGTGCAGCGGCTCCTTATCGCCCGTACAAAATCCAACAA
GTATTACGCCCAGGAGGAGGTGGAGGTTGAGTTAGGGTTAGAGCGAGGAG
ATATCGGCAAATTTTACTTCTCGATGCATCACGGAGAAGGAGGTATGAAG
AAGAAGGCGACAACGTTGGCCCTTCTGCGAGAAGCCGGCGTGTTCCGGGT
CATGGGGAGGAAGCCGATGGGGCGGGGTACGAAGTTCCGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11913:736..1825+

>mRNA_S-dermatodea_contig11913.1202.1 ID=mRNA_S-dermatodea_contig11913.1202.1|Name=mRNA_S-dermatodea_contig11913.1202.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at S-dermatodea_contig11913:736..1825+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCAGCTGTGCAAGATGGCAGCTGTGCAAGGTGCCGACTCCGCCGTGG
TGCACAAAGTGCAGCGGCTCCTTATCGCCCGTACAAAATCCAACAAGTAT
TACGCCCAGGAGGAGGTGGAGGTTGAGTTAGGGTTAGAGCGAGGAGATAT
CGGCAAATTTTACTTCTCGATGCATCACGGAGAAGGAGGTATGAAGAAGA
AGGCGACAACGTTGGCCCTTCTGCGAGAAGCCGGCGTGTTCCGGGTCATG
GGGAGGAAGCCGATGGGGCGGGGTACGAAGTTCCGGGTGCCGACTCCGCC
GTGGTGCACAAAGTGCAGCGGCTCCTTATCGCCCGTACAAAATCCAACAA
GTATTACGCCCAGGAGGAGGTGGAGGTTGAGTTAGGGTTAGAGCGAGGAG
ATATCGGCAAATTTTACTTCTCGATGCATCACGGAGAAGGAGGTATGAAG
AAGAAGGCGACAACGTTGGCCCTTCTGCGAGAAGCCGGCGTGTTCCGGGT
CATGGGGAGGAAGCCGATGGGGCGGGGTACGAAGTTCCGG
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