mRNA_S-dermatodea_contig11909.1201.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11909.1201.1
Unique NamemRNA_S-dermatodea_contig11909.1201.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11909.1201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11909contigS-dermatodea_contig11909:3982..4704 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size723
Cds size432
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11909.1201.1prot_S-dermatodea_contig11909.1201.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11909 4220..4651 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924223.282689-UTR-S-dermatodea_contig11909:3981..42191622924223.282689-UTR-S-dermatodea_contig11909:3981..4219Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11909 3982..4219 +
1694079105.6499276-UTR-S-dermatodea_contig11909:3981..42191694079105.6499276-UTR-S-dermatodea_contig11909:3981..4219Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11909 3982..4219 +
1622924223.3056755-UTR-S-dermatodea_contig11909:4651..47041622924223.3056755-UTR-S-dermatodea_contig11909:4651..4704Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11909 4652..4704 +
1694079105.6692278-UTR-S-dermatodea_contig11909:4651..47041694079105.6692278-UTR-S-dermatodea_contig11909:4651..4704Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11909 4652..4704 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924223.2928603-CDS-S-dermatodea_contig11909:4219..46511622924223.2928603-CDS-S-dermatodea_contig11909:4219..4651Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11909 4220..4651 +
1694079105.6595569-CDS-S-dermatodea_contig11909:4219..46511694079105.6595569-CDS-S-dermatodea_contig11909:4219..4651Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11909 4220..4651 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11909.1201.1

>prot_S-dermatodea_contig11909.1201.1 ID=prot_S-dermatodea_contig11909.1201.1|Name=mRNA_S-dermatodea_contig11909.1201.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=144bp
MVECRVPARPGPSLHLLIAVVAQNIGTGLRDQNSGGIILLLRGFSFGFDR
FVPLLLVVGWLVCLGVRLQHGHVIIDAATFFLLLVRCLPGTVVLNRYARH
VGRDGDSRGRPGGHRVGRGELRVNEAVAVPPEQDDYRYRGRHD*
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mRNA from alignment at S-dermatodea_contig11909:3982..4704+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11909.1201.1 ID=mRNA_S-dermatodea_contig11909.1201.1|Name=mRNA_S-dermatodea_contig11909.1201.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=723bp|location=Sequence derived from alignment at S-dermatodea_contig11909:3982..4704+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCTTATCGAAGCGACTTCTTCGTCGCCGGTGAGGGCGTCTCCGCAGTCG
AGAGCGTCCCGCACCTCGTCTACCACTGCCGTCGCCTCCGTGGCTGCTGC
GGCCATCGCCTCGTTCACATTCGGCGCCACCCTCATCCCCGAACCGCCTT
CACTGTCCGCCTCCATACCTGATGCTTCACCTTCACTGTCCGAGGCACCG
CGGTCGAACGCGGCGTCCTCTTCCGTGGCGGGCACCACATGGTCGAGTGC
AGGGTTCCAGCAAGACCCGGGCCATCCCTCCATCTCCTCATCGCCGTCGT
CGCCCAGAACATCGGCACCGGCCTCCGAGATCAGAACTCCGGGGGAATAA
TCCTCCTGCTCCGGGGCTTCTCCTTCGGATTCGACCGTTTCGTACCGCTG
CTGCTGGTCGTTGGTTGGCTCGTCTGCCTCGGGGTTCGGCTCCAACATGG
GCACGTCATCATTGACGCCGCCACATTCTTCCTCTTGCTCGTGAGATGCC
TCCCGGGGACCGTCGTGCTCAATCGCTACGCTCGGCACGTAGGCCGCGAC
GGAGATAGCAGGGGTCGACCAGGGGGACACCGGGTGGGAAGAGGAGAGCT
TCGGGTCAACGAAGCCGTCGCCGTGCCCCCCGAGCAAGACGACTACCGCT
ACCGAGGCCGCCACGACTAGGGCCGAGAAGACTATAGCACAGAAACGACG
TGGTCTTTCGTGGTGCACGGTGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11909:3982..4704+

>mRNA_S-dermatodea_contig11909.1201.1 ID=mRNA_S-dermatodea_contig11909.1201.1|Name=mRNA_S-dermatodea_contig11909.1201.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=864bp|location=Sequence derived from alignment at S-dermatodea_contig11909:3982..4704+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTCGAGTGCAGGGTTCCAGCAAGACCCGGGCCATCCCTCCATCTCCT
CATCGCCGTCGTCGCCCAGAACATCGGCACCGGCCTCCGAGATCAGAACT
CCGGGGGAATAATCCTCCTGCTCCGGGGCTTCTCCTTCGGATTCGACCGT
TTCGTACCGCTGCTGCTGGTCGTTGGTTGGCTCGTCTGCCTCGGGGTTCG
GCTCCAACATGGGCACGTCATCATTGACGCCGCCACATTCTTCCTCTTGC
TCGTGAGATGCCTCCCGGGGACCGTCGTGCTCAATCGCTACGCTCGGCAC
GTAGGCCGCGACGGAGATAGCAGGGGTCGACCAGGGGGACACCGGGTGGG
AAGAGGAGAGCTTCGGGTCAACGAAGCCGTCGCCGTGCCCCCCGAGCAAG
ACGACTACCGCTACCGAGGCCGCCACGACTAGATGGTCGAGTGCAGGGTT
CCAGCAAGACCCGGGCCATCCCTCCATCTCCTCATCGCCGTCGTCGCCCA
GAACATCGGCACCGGCCTCCGAGATCAGAACTCCGGGGGAATAATCCTCC
TGCTCCGGGGCTTCTCCTTCGGATTCGACCGTTTCGTACCGCTGCTGCTG
GTCGTTGGTTGGCTCGTCTGCCTCGGGGTTCGGCTCCAACATGGGCACGT
CATCATTGACGCCGCCACATTCTTCCTCTTGCTCGTGAGATGCCTCCCGG
GGACCGTCGTGCTCAATCGCTACGCTCGGCACGTAGGCCGCGACGGAGAT
AGCAGGGGTCGACCAGGGGGACACCGGGTGGGAAGAGGAGAGCTTCGGGT
CAACGAAGCCGTCGCCGTGCCCCCCGAGCAAGACGACTACCGCTACCGAG
GCCGCCACGACTAG
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