mRNA_S-dermatodea_contig11893.1194.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11893.1194.1
Unique NamemRNA_S-dermatodea_contig11893.1194.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11893.1194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11893contigS-dermatodea_contig11893:4947..5921 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size603
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11893.1194.1prot_S-dermatodea_contig11893.1194.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11893 5473..5787 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924222.443054-UTR-S-dermatodea_contig11893:4946..49741622924222.443054-UTR-S-dermatodea_contig11893:4946..4974Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11893 4947..4974 +
1694079104.094809-UTR-S-dermatodea_contig11893:4946..49741694079104.094809-UTR-S-dermatodea_contig11893:4946..4974Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11893 4947..4974 +
1622924222.4578643-UTR-S-dermatodea_contig11893:5346..54721622924222.4578643-UTR-S-dermatodea_contig11893:5346..5472Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11893 5347..5472 +
1694079104.1064925-UTR-S-dermatodea_contig11893:5346..54721694079104.1064925-UTR-S-dermatodea_contig11893:5346..5472Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11893 5347..5472 +
1622924222.474009-UTR-S-dermatodea_contig11893:5787..59211622924222.474009-UTR-S-dermatodea_contig11893:5787..5921Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11893 5788..5921 +
1694079104.1285238-UTR-S-dermatodea_contig11893:5787..59211694079104.1285238-UTR-S-dermatodea_contig11893:5787..5921Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11893 5788..5921 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924222.4660425-CDS-S-dermatodea_contig11893:5472..57871622924222.4660425-CDS-S-dermatodea_contig11893:5472..5787Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11893 5473..5787 +
1694079104.1162493-CDS-S-dermatodea_contig11893:5472..57871694079104.1162493-CDS-S-dermatodea_contig11893:5472..5787Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11893 5473..5787 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11893.1194.1

>prot_S-dermatodea_contig11893.1194.1 ID=prot_S-dermatodea_contig11893.1194.1|Name=mRNA_S-dermatodea_contig11893.1194.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=105bp
MENPALLERIHGGLLLSVDLTLRRYGLKRAGRQTMPRSRTRRFPLDPNDC
LPRPAGHGLSGRFLEGLPPGDFPEPLFVPQVGKGLNRWGLVSRARSTVLA
VFAL*
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mRNA from alignment at S-dermatodea_contig11893:4947..5921+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11893.1194.1 ID=mRNA_S-dermatodea_contig11893.1194.1|Name=mRNA_S-dermatodea_contig11893.1194.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=975bp|location=Sequence derived from alignment at S-dermatodea_contig11893:4947..5921+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCCCGGCAGGACTTACACCGCCCCCAGGTAGGATATCAGGAACATGGGC
GACGACACGAGTATTTCCCTCAACGGTTCGATTGTTGTCTTTGTGCGACG
TATCTTTGTGGTTATCCGTCCGATCACGGCACCATGACAACACGTCTCTC
GATAGTCTATCTTAAGGCGCCCCGTTGAGGAAGGCATCACAATCTCCTTC
TCGCGACGATAATGCTCGGGCAGCAACTCAACGTGTTGTTGCCGTTTGAC
GTCGCAAACTCTTTCGTGTGGCACTGTGCGTCCGACCGCTCCTCTTCTGA
TTGCTTCGTGCTCTCGCGCCTTTCTCTACCGTGTGTCTCTCTCTACCGTG
TGTCTCTCTCTTCCGTGTGTCTCGTGCTGCTTGTTTGTGTTGCGTCGCAG
GCGACCCCTTCCGCCTCGGCGCTTGAGCAAGCACACGTCTTCATTCAGGT
GATCTTCCCCACGGACCGCGCGTTTACACACAACGAGGATGCTCCGGTGG
TGAGCGAGGCGACGCTCTGCGCGCTAATGGAGAACCCGGCACTCCTTGAA
CGCATCCACGGCGGCCTTCTTCTCTCCGTGGACCTGACGCTGAGGAGGTA
CGGCCTCAAGCGCGCAGGGAGGCAGACAATGCCGCGGTCGAGGACGCGAC
GCTTTCCGCTTGACCCGAATGATTGCCTCCCTCGGCCTGCTGGACATGGC
CTCTCTGGCCGATTCCTTGAGGGACTTCCTCCTGGCGACTTTCCCGAACC
ACTCTTCGTGCCGCAAGTGGGAAAAGGCCTGAATCGCTGGGGACTGGTAT
CGCGCGCCAGATCCACTGTCTTGGCTGTGTTTGCTCTGTGACGCCTCGCG
AACGTTTACAGCTGTGGCTTGCAGCCAATGCTCGCCTGGCTGCGGCGCCG
GGCAGGAATTATGGGTGGAGGGTGCCGATTCTCACGCCGCCAGGGTGTTA
TCCGCTGAAACGCGGTTGGGCGTGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11893:4947..5921+

>mRNA_S-dermatodea_contig11893.1194.1 ID=mRNA_S-dermatodea_contig11893.1194.1|Name=mRNA_S-dermatodea_contig11893.1194.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at S-dermatodea_contig11893:4947..5921+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAGAACCCGGCACTCCTTGAACGCATCCACGGCGGCCTTCTTCTCTC
CGTGGACCTGACGCTGAGGAGGTACGGCCTCAAGCGCGCAGGGAGGCAGA
CAATGCCGCGGTCGAGGACGCGACGCTTTCCGCTTGACCCGAATGATTGC
CTCCCTCGGCCTGCTGGACATGGCCTCTCTGGCCGATTCCTTGAGGGACT
TCCTCCTGGCGACTTTCCCGAACCACTCTTCGTGCCGCAAGTGGGAAAAG
GCCTGAATCGCTGGGGACTGGTATCGCGCGCCAGATCCACTGTCTTGGCT
GTGTTTGCTCTGTGAATGGAGAACCCGGCACTCCTTGAACGCATCCACGG
CGGCCTTCTTCTCTCCGTGGACCTGACGCTGAGGAGGTACGGCCTCAAGC
GCGCAGGGAGGCAGACAATGCCGCGGTCGAGGACGCGACGCTTTCCGCTT
GACCCGAATGATTGCCTCCCTCGGCCTGCTGGACATGGCCTCTCTGGCCG
ATTCCTTGAGGGACTTCCTCCTGGCGACTTTCCCGAACCACTCTTCGTGC
CGCAAGTGGGAAAAGGCCTGAATCGCTGGGGACTGGTATCGCGCGCCAGA
TCCACTGTCTTGGCTGTGTTTGCTCTGTGA
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