mRNA_S-dermatodea_contig11893.1193.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11893.1193.1
Unique NamemRNA_S-dermatodea_contig11893.1193.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11893.1193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11893contigS-dermatodea_contig11893:1064..4930 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons7
Model size781
Cds size687
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11893.1193.1prot_S-dermatodea_contig11893.1193.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11893 1156..4930 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924222.348822-UTR-S-dermatodea_contig11893:1063..11551622924222.348822-UTR-S-dermatodea_contig11893:1063..1155Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11893 1064..1155 +
1694079103.9883487-UTR-S-dermatodea_contig11893:1063..11551694079103.9883487-UTR-S-dermatodea_contig11893:1063..1155Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11893 1064..1155 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924222.3576322-CDS-S-dermatodea_contig11893:1155..12571622924222.3576322-CDS-S-dermatodea_contig11893:1155..1257Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11893 1156..1257 +
1694079103.9990573-CDS-S-dermatodea_contig11893:1155..12571694079103.9990573-CDS-S-dermatodea_contig11893:1155..1257Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11893 1156..1257 +
1622924222.3651083-CDS-S-dermatodea_contig11893:1719..18361622924222.3651083-CDS-S-dermatodea_contig11893:1719..1836Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11893 1720..1836 +
1694079104.0071356-CDS-S-dermatodea_contig11893:1719..18361694079104.0071356-CDS-S-dermatodea_contig11893:1719..1836Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11893 1720..1836 +
1622924222.3746367-CDS-S-dermatodea_contig11893:2687..27621622924222.3746367-CDS-S-dermatodea_contig11893:2687..2762Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11893 2688..2762 +
1694079104.0150774-CDS-S-dermatodea_contig11893:2687..27621694079104.0150774-CDS-S-dermatodea_contig11893:2687..2762Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11893 2688..2762 +
1622924222.3821502-CDS-S-dermatodea_contig11893:3288..33391622924222.3821502-CDS-S-dermatodea_contig11893:3288..3339Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11893 3289..3339 +
1694079104.02726-CDS-S-dermatodea_contig11893:3288..33391694079104.02726-CDS-S-dermatodea_contig11893:3288..3339Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11893 3289..3339 +
1622924222.3898664-CDS-S-dermatodea_contig11893:3784..39131622924222.3898664-CDS-S-dermatodea_contig11893:3784..3913Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11893 3785..3913 +
1694079104.0438838-CDS-S-dermatodea_contig11893:3784..39131694079104.0438838-CDS-S-dermatodea_contig11893:3784..3913Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11893 3785..3913 +
1622924222.39747-CDS-S-dermatodea_contig11893:4131..42511622924222.39747-CDS-S-dermatodea_contig11893:4131..4251Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11893 4132..4251 +
1694079104.0594513-CDS-S-dermatodea_contig11893:4131..42511694079104.0594513-CDS-S-dermatodea_contig11893:4131..4251Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11893 4132..4251 +
1622924222.4051611-CDS-S-dermatodea_contig11893:4837..49301622924222.4051611-CDS-S-dermatodea_contig11893:4837..4930Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11893 4838..4930 +
1694079104.0799441-CDS-S-dermatodea_contig11893:4837..49301694079104.0799441-CDS-S-dermatodea_contig11893:4837..4930Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11893 4838..4930 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11893.1193.1

>prot_S-dermatodea_contig11893.1193.1 ID=prot_S-dermatodea_contig11893.1193.1|Name=mRNA_S-dermatodea_contig11893.1193.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=229bp
MIDRWIVPAALRVCMRCVRPSLECERLDAFFLSPFLRFRRRFPERAVLLR
RTAPRNPTANVEDGWDYCPEGVLMPRTVKKAKLRDASTGAGRRSGPFEIA
TKVTGTASNTLKAQKTMAKYGLAAKKKQDQERFEAEILILDANPWFRRLN
AITLAQHQAEMESTKAAAADEVEALKRTHAEQEARLKAEAEKEKNDLLAQ
QQAQFARERAVQDQLSEATAEIERLRASL
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mRNA from alignment at S-dermatodea_contig11893:1064..4930+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11893.1193.1 ID=mRNA_S-dermatodea_contig11893.1193.1|Name=mRNA_S-dermatodea_contig11893.1193.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3867bp|location=Sequence derived from alignment at S-dermatodea_contig11893:1064..4930+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCACACGCGGAGTTTAATCAGCGCGCCTGCTCACCCTGTGCACCAGCTG
CAGATGTTACCCGACTCGTGACCTCTGGCGAGAGCCCTCGACATGATAGA
TAGATGGATCGTGCCGGCGGCGTTGCGAGTATGCATGCGCTGTGTGCGGC
CTTCGCTGGAATGTGAGAGGCTTGACGCATTTTTCCTCTCTCCGGTGAGC
TTTGGGCTGTTCTCTCCGGGACTATCCTGCTGCGTATCATAGACTACTAC
ATCACTACAGCAGTACTCTGTGCTGACGCCCGTGCCACTCTATCGTGTTA
TTATAATAGACGCTGCATGTAGTCCTGTAAGGTAGTGCCGCGTGTGGACT
TAGTGCCTTTCGACATGTGAATGCACCATACAACAAGGGGGTGGGCTACC
AATGCTCACGCACAGCTCTCTACTTGCTCTCTCTGCTGTATAGGAACCAA
GGTGATGTTTGCTTGGTGCATGTCGAAAAGGAATACTGGTATGTCCTTGT
ACAAGTTTGAGACTGACTGTTCGCTCTTATGAATAGCTCTTACGTAGCCC
TCCTCTTTTACGACACTCTTCACAGGCCGTCTTCCTTTCCGCGATCCCCT
GGGCCATCATCCCTTCGCTGCCCTTGTCCTGCAAACTCTGTGTTTTGATC
TAGCAGTTCTTGAGGTTCCGGCGCCGCTTCCCCGAGAGGGCCGTTCTTCT
TCGGAGGACAGCGCCTCGCAACCCTACAGCGAATGTCGAGGATGGTTGGG
ATTACTGTCCCGAAGGAGTGCTGGTAAGGAAGGCTACAGCAGTGTTCGTA
GATGCCGCTCTGTCTCCTCTCTTCAAGTGCCACATTGTGCGGGGCATGGG
TATTACGGTACTGGTGATACTAATGTAATTTCTGGCGCGTGTCCTTGTGT
GAAGAGTGCACGGTGCTGTCTGCTTCTACAACTGTAGTACAGTCAGTTAT
CAAGTAGTTATGAGCACTGTACAGTAGTACTTCGTACAAGTTCAAGTACA
TCCCCTGCGAAATCTGTTCGGTCAGTCTAAGTGCTACGACTGCTGTCTTG
TACTTGTACTTTTACTGTACATGATATTCACACGAATGCACCGCTGTGCA
CCTTGTGCATGCATGGAATACACCAAGGGTAGCTTACTTTGTACAGGGAG
AGCAAATGCACCACAAGGTACAGCTCGCTTGCTGCCACCACGAACGCTAC
GTGCGCCCCCACTTGGACAATATATGTTTGGCTACGGCTTTGTCGCGTTA
GAGCTCTATTGGTAGATGGGATAGCGTTTTGGGCGAATGCGGTAATACGT
GTTTACCTCCCACAGCGCGTGACTTGGACGCCTGTATTGCGATATCGCGT
CGACCGTACGTACCATACATGTACACAGCAGAGGTGCACGGGTCCTAGGA
TAGCATAGCATCCGTGCACTCTGAAGTCGCTCATACTACGGAGTCCCCTG
CTGCGCGAGGTACTGGTGGTAATATGATAACTCTATACCTTAAGGGTACA
GTAAACAAATAATATGATACATCACAGCAGTTATGCACGTCCGTGTACCT
TTTGCAACAGAAAGGCATTTACTAACTGAACAGAACTCCCGTTTCCACGG
CACTCTGCACACGGCACTCTGCAGATGCCTCGCACCGTGAAGAAGGCCAA
GCTCCGCGACGCCTCCACGGGAGCGGGCAGGCGCTCCGGACCTTTCGAGG
TCAGAACGTTATTAAGATAATAGCACCTTTCACTGAATAGTGCAACGCGA
TGTGGCTGCTAGTTTTTGTGTGCCTGGAGGATCGATAGTGTTGGTTGCGT
TGCAACACCCCCCTCTTTGGGCTGTGTTGGCAATCGCAACGCCTTATAAT
AGGGTGTTGCCAGCGAACCGTGTCTCAAGGCTTCTTTCAATCAGCCTTGC
TATCAGGTGTTAGTCGCACGCCCGCACTCGTCGACCCACCCTTATGCTCC
CATGCGGTCCGTCCTCGAGGTTTTTTTTTTTCCCCCTCGTGGTGATCGCA
GTTCGCCTGTTACGCTGTATGCTATTCAGAGATGTGTGTCGGTATAGTCT
CTTCGCGGTAGTATCGGGAGCACCTTGTCAGGTTGAGTGCTGCGCGCTAC
GCCTTGCAAGTTGGCGGTTTCGCTTACTGCATACCAGCATGTTCCAGACG
ACTCTCGTCAGGTTTAAGATTCCAACATCCGAAGCTCTCATCTATTGCAC
ACCGTTCATGTCCGACGTTCGACAGATCGCCACAAAGGTCACGGGGACTG
CGTCCAACACCCTCAAGGCGCAGAAGGTACGCGTAAACCTTTCTAGGGAG
CGCTCAGCAGTAGATCACATATACTTAGCAGTAGGCCATGAATACTTAGC
TGTAGACCATGCTTAGTCGCCGTGATCCGCGCGGTTGGCGGTGGGCTCTT
CTCTGTGTTGTGAGCAGGAATCGCTTGGCGTGTACATGCCGTGGTCGCTC
GCGGTCTGGCGGTTGTTGCGCTTGTGTGTTGAATGTTTTTGTACTGTTAT
AGTAGATGACTACAGTAGCCCGGTTCTCTTCGTAAGGCTCAACACCCATC
TCATGACAGGCACTACAGTATATCGAACACGCGAGTGCGGCGCATCTCTT
AAGCTTGCGCTGTCAGTAGTAACGTGAGCCCGGCTCGTTGCCGCCAGCTG
CTGCCTGCGGAAGAGCGAGTGCTTGCCGACCCTGAAAATGTCCGCGTAAT
GGTAATGCTGTACCTCTACAGACTATGGCGAAATATGGGCTGGCCGCCAA
GAAGAAACAGGACCAGGAGCGCTTTGAGGCGGAGATCCTGATATTGGATG
CCAACCCGTGGTTCAGGAGGCTAAACGCGATCACCTTGGCCCAACACCAG
GTGGGGTGTGGACGCGAAAATACAGTGCCGGTCGTTTTGTGCCGTGATTG
TGGCCCACGTGAGCATTGCCTGTATTCATACTTCGAAGTATTAATAGTGG
CTTATCCTCTACAACGGGTGTTGATGCCCCCCCTCCTTCCGCGGGGCTCT
TGTCGCACTGCCGAGTTTCGTGTTATTGCGCGTATTGAGACATGTCCGAC
ACGCCTCCACCCACCCAGGCGGAGATGGAGAGCACGAAGGCGGCTGCGGC
GGATGAGGTGGAGGCCCTGAAAAGAACGCACGCTGAGCAAGAAGCCCGCC
TGAAGGCAGAGGCTGAGAAGGAGAAGAACGACCTTCTGGTGGGTTTCCTC
TTGCGGGATTTGAACACAGACAGCTGAAGACGGTAAAGATATATGAACAC
AGAGCTGGCATTGGGGTCCAAAATATTAACACAGACCCCCCCCCCCCCGC
CGCGTGTTGGTAGACGCACACTACACACCTCAAATTGCTCGTGCTGAGTG
TTTTACTCACGCTTTTATGGCGGTCCTTCGCGAGGCAAGTTTTTAGCGGC
TTGCCGTGCAATACCAGCGCAGTATCAGGTTTCTCCCATGATCGGGCTAA
CGGCAGATCAAGGACAACCAGTATTAATAAGATATTCTTGCGGCGGAGAT
AGAACGCATGCAAGCGTGCAGCCGGACTCTTGTCGTGCGCGGAGGGGATT
GCTTGCCGATTCTGCTTGCGATGGTGTTGATGCTTCAATGGGAACGCTGA
AAACCTACTGCGTGCTATCATAGAGGAAACGCTGTCGAGCACGCTACTAT
AGCAGCCTGCATGAGTGCGCCGTCCGTGTATTGGTCGCTCTTGTGTTGTA
AAACGCGTCTCCTGCCGGAGTACCCTGCTGGATGTATTCAGACGTTTGTT
TTATTTTTGCCGTGCTACGCTCAGGCCCAGCAACAGGCCCAGTTTGCGCG
CGAGCGTGCTGTGCAGGACCAGCTGAGCGAGGCTACCGCCGAAATCGAGC
GGTTGCGCGCGAGCCTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11893:1064..4930+

>mRNA_S-dermatodea_contig11893.1193.1 ID=mRNA_S-dermatodea_contig11893.1193.1|Name=mRNA_S-dermatodea_contig11893.1193.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1374bp|location=Sequence derived from alignment at S-dermatodea_contig11893:1064..4930+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATAGATAGATGGATCGTGCCGGCGGCGTTGCGAGTATGCATGCGCTG
TGTGCGGCCTTCGCTGGAATGTGAGAGGCTTGACGCATTTTTCCTCTCTC
CGATGATAGATAGATGGATCGTGCCGGCGGCGTTGCGAGTATGCATGCGC
TGTGTGCGGCCTTCGCTGGAATGTGAGAGGCTTGACGCATTTTTCCTCTC
TCCGTTCTTGAGGTTCCGGCGCCGCTTCCCCGAGAGGGCCGTTCTTCTTC
GGAGGACAGCGCCTCGCAACCCTACAGCGAATGTCGAGGATGGTTGGGAT
TACTGTCCCGAAGGAGTGCTGTTCTTGAGGTTCCGGCGCCGCTTCCCCGA
GAGGGCCGTTCTTCTTCGGAGGACAGCGCCTCGCAACCCTACAGCGAATG
TCGAGGATGGTTGGGATTACTGTCCCGAAGGAGTGCTGATGCCTCGCACC
GTGAAGAAGGCCAAGCTCCGCGACGCCTCCACGGGAGCGGGCAGGCGCTC
CGGACCTTTCGAGATGCCTCGCACCGTGAAGAAGGCCAAGCTCCGCGACG
CCTCCACGGGAGCGGGCAGGCGCTCCGGACCTTTCGAGATCGCCACAAAG
GTCACGGGGACTGCGTCCAACACCCTCAAGGCGCAGAAGATCGCCACAAA
GGTCACGGGGACTGCGTCCAACACCCTCAAGGCGCAGAAGACTATGGCGA
AATATGGGCTGGCCGCCAAGAAGAAACAGGACCAGGAGCGCTTTGAGGCG
GAGATCCTGATATTGGATGCCAACCCGTGGTTCAGGAGGCTAAACGCGAT
CACCTTGGCCCAACACCAGACTATGGCGAAATATGGGCTGGCCGCCAAGA
AGAAACAGGACCAGGAGCGCTTTGAGGCGGAGATCCTGATATTGGATGCC
AACCCGTGGTTCAGGAGGCTAAACGCGATCACCTTGGCCCAACACCAGGC
GGAGATGGAGAGCACGAAGGCGGCTGCGGCGGATGAGGTGGAGGCCCTGA
AAAGAACGCACGCTGAGCAAGAAGCCCGCCTGAAGGCAGAGGCTGAGAAG
GAGAAGAACGACCTTCTGGCGGAGATGGAGAGCACGAAGGCGGCTGCGGC
GGATGAGGTGGAGGCCCTGAAAAGAACGCACGCTGAGCAAGAAGCCCGCC
TGAAGGCAGAGGCTGAGAAGGAGAAGAACGACCTTCTGGCCCAGCAACAG
GCCCAGTTTGCGCGCGAGCGTGCTGTGCAGGACCAGCTGAGCGAGGCTAC
CGCCGAAATCGAGCGGTTGCGCGCGAGCCTGGCCCAGCAACAGGCCCAGT
TTGCGCGCGAGCGTGCTGTGCAGGACCAGCTGAGCGAGGCTACCGCCGAA
ATCGAGCGGTTGCGCGCGAGCCTG
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