mRNA_S-dermatodea_contig11891.1191.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11891.1191.1
Unique NamemRNA_S-dermatodea_contig11891.1191.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig11891.1191.1 vs. uniprot
Match: D8LLZ5_ECTSI (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLZ5_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 3.830e-54
Identity = 89/127 (70.08%), Postives = 110/127 (86.61%), Query Frame = 3
Query:    3 MIDSMDTYFQVLAEN--QDKIVVVKVFAGFCRACKAFDRKYRALALDYEATGAEIKFYEMDWMQTRDLCKSLQ--VKKLPHLELYSGERGRLESFVCGPSKAGLLKDKLELLLADPSDPSLGTAPPP 371
            +I + + YF+VL EN  +D+IVV+K++AGFCRACKAFDRK+R L+LD++  GA +KF+EMDWMQTRDLCKSLQ  VKKLPH+ELY GERGRLESFVCGPSK+ LLK+KL+ L+ADP+DPSLG AP P
Sbjct:  132 VISTAERYFEVLRENAQKDQIVVIKIYAGFCRACKAFDRKFRLLSLDFQEQGANVKFFEMDWMQTRDLCKSLQKKVKKLPHMELYVGERGRLESFVCGPSKSSLLKEKLDKLVADPADPSLGEAPIP 258          
BLAST of mRNA_S-dermatodea_contig11891.1191.1 vs. uniprot
Match: A0A6H5JEA9_9PHAE (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEA9_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 3.040e-52
Identity = 90/127 (70.87%), Postives = 111/127 (87.40%), Query Frame = 3
Query:    3 MIDSMDTYFQVLAEN--QDKIVVVKVFAGFCRACKAFDRKYRALALDYEATGAEIKFYEMDWMQTRDLCKSLQ--VKKLPHLELYSGERGRLESFVCGPSKAGLLKDKLELLLADPSDPSLGTAPPP 371
            +ID+ + YF+VL EN  +D+IVV+K++AGFCRACKAFDRK+R L+LD++  GA +KF+EMDWMQTRDLCKSLQ  VKKLPH+ELY GERGRLESFVCGPSK+ LLK+KL+ L+ADP+DPSLG AP P
Sbjct:  405 VIDTAERYFEVLRENAQKDQIVVIKIYAGFCRACKAFDRKFRLLSLDFQEQGANVKFFEMDWMQTRDLCKSLQKKVKKLPHMELYVGERGRLESFVCGPSKSSLLKEKLDKLVADPADPSLGEAPIP 531          
BLAST of mRNA_S-dermatodea_contig11891.1191.1 vs. uniprot
Match: A0A2V3IJC0_9FLOR (Thioredoxin-like 2-1, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJC0_9FLOR)

HSP 1 Score: 90.9 bits (224), Expect = 1.160e-18
Identity = 42/110 (38.18%), Postives = 68/110 (61.82%), Query Frame = 3
Query:    3 MIDSMDTYFQVLAENQDKIVVVKVFAGFCRACKAFDRKYRALALDYEATGAEIKFYEMDWMQTRDLCKSLQVKKLPHLELYSGERGRLESFVCGPSKAGLLKDKLELLLA 332
            +I  ++ Y QVL E+ D +VV+KVFA +CR+C+A   K    A ++    + ++F++MD+ Q ++LC  L V  +P    Y G  G +E F CGP +A +L++K+E  LA
Sbjct:   65 LIHGVEQYLQVLRESSDSLVVLKVFAPWCRSCRALTPKVNRFAREF----SNVRFFKMDYEQNKELCHRLGVASMPTFVFYWGVAGEIEKFSCGPQRAYILREKIEQCLA 170          
BLAST of mRNA_S-dermatodea_contig11891.1191.1 vs. uniprot
Match: A0A7S3ATR9_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ATR9_9EUKA)

HSP 1 Score: 89.7 bits (221), Expect = 3.900e-18
Identity = 43/107 (40.19%), Postives = 69/107 (64.49%), Query Frame = 3
Query:    6 IDSMDTYFQVLAE--NQDKIVVVKVFAGFCRACKAFDRKYRALALDYEATGAEIKFYEMDWMQTRDLCKSLQVKKLPHLELYSGERGRLESFVCGPSKAGLLKDKLE 320
            ID  D Y  ++ E   ++++VV+K FA +CRACKA   K+  +A D+     +++F+E+ +   + LCKSL +K LP++E+  G  G++E F CGPSK   L++KLE
Sbjct:   58 IDDTDAYEALIEEATRENRVVVIKFFASWCRACKAMSPKFTRIADDWP----DVEFHEIMFDNNKKLCKSLGIKILPYIEIIGGSGGKVEGFTCGPSKISRLQEKLE 160          
BLAST of mRNA_S-dermatodea_contig11891.1191.1 vs. uniprot
Match: A0A7S4C0Q1_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C0Q1_CHRCT)

HSP 1 Score: 88.6 bits (218), Expect = 1.100e-17
Identity = 39/95 (41.05%), Postives = 69/95 (72.63%), Query Frame = 3
Query:   39 AENQDKIVVVKVFAGFCRACKAFDRKYRALALDYEATGAEIKFYEMDWMQTRDLCKSLQVKKLPHLELYSGERGRLESFVCGPSKAGLLKDKLEL 323
            A+ ++++VV+KV+A +CRACKA   KY+ +A D+     +++F ++ +   ++LCKSL +K LP++E+ +G +G++E F CGPSK   L++KLE+
Sbjct:   80 AKRENQVVVIKVYASWCRACKAMAPKYQRIAEDWP----DVEFCDILFDNNKNLCKSLGIKVLPYVEIIAGGKGKVEGFSCGPSKVSQLQEKLEV 170          
BLAST of mRNA_S-dermatodea_contig11891.1191.1 vs. uniprot
Match: A0A7S3WN14_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WN14_EMIHU)

HSP 1 Score: 84.3 bits (207), Expect = 6.510e-16
Identity = 40/95 (42.11%), Postives = 63/95 (66.32%), Query Frame = 3
Query:   39 AENQDKIVVVKVFAGFCRACKAFDRKYRALALDYEATGAEIKFYEMDWMQTRDLCKSLQVKKLPHLELYSGERGRLESFVCGPSKAGLLKDKLEL 323
            AE++ ++V +K +A +CRACKA   KY+ +A D+     EI+F E+ +   + LCK L +K LP++E+ +G  G++E F CGPSK   L +KLE+
Sbjct:   98 AESESRVVCIKFYASWCRACKAMAPKYKRVADDWP----EIEFCEVLFDTNKALCKGLGIKVLPYIEVVAGSAGKVEGFSCGPSKISSLMEKLEV 188          
BLAST of mRNA_S-dermatodea_contig11891.1191.1 vs. uniprot
Match: A0A7S3TUC7_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TUC7_9SPIT)

HSP 1 Score: 82.4 bits (202), Expect = 8.180e-16
Identity = 38/95 (40.00%), Postives = 63/95 (66.32%), Query Frame = 3
Query:   39 AENQDKIVVVKVFAGFCRACKAFDRKYRALALDYEATGAEIKFYEMDWMQTRDLCKSLQVKKLPHLELYSGERGRLESFVCGPSKAGLLKDKLEL 323
            A+ ++++VV+K +A +CRACKA   KY  +A D+     E++F EM +   + LCK L +K LP++E+ +G  G+++ F CGPSK   L ++LE+
Sbjct:   32 AKAENRVVVIKFYASWCRACKAMGPKYVKVAQDWP----ELEFCEMLYDNNKKLCKELGIKVLPYIEIVAGNAGKVDGFSCGPSKISKLIERLEV 122          
BLAST of mRNA_S-dermatodea_contig11891.1191.1 vs. uniprot
Match: A0A7S4A7N2_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A7N2_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 9.690e-16
Identity = 40/105 (38.10%), Postives = 67/105 (63.81%), Query Frame = 3
Query:   18 DTYFQVLAENQ-DKIVVVKVFAGFCRACKAFDRKYRALALDYEATGAEIKFYEMDWMQTRDLCKSLQVKKLPHLELYSGERGRLESFVCGPSKAGLLKDKLELLL 329
            DT+   ++++  DK+V +K +AG+CRACK    ++  LA ++   G E  FYE+++   +DLC+ L +KKLP ++ + G  G + + +CGPSK   ++ KLE LL
Sbjct:  119 DTFLAAMSKSAGDKVVAIKFYAGWCRACKTIAPRFERLAKEF---GEEAAFYEIEFSANKDLCRRLDIKKLPCVQFFRGAEGHVATVMCGPSKFPDVRLKLEDLL 220          
BLAST of mRNA_S-dermatodea_contig11891.1191.1 vs. uniprot
Match: A0A7S0J7Q1_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J7Q1_9EUKA)

HSP 1 Score: 82.4 bits (202), Expect = 3.980e-15
Identity = 39/95 (41.05%), Postives = 63/95 (66.32%), Query Frame = 3
Query:   39 AENQDKIVVVKVFAGFCRACKAFDRKYRALALDYEATGAEIKFYEMDWMQTRDLCKSLQVKKLPHLELYSGERGRLESFVCGPSKAGLLKDKLEL 323
            A  ++K+V++K  A +CRACKA   KY+ +A D+     E++F E+ +   + LCKSL +K LP++E+  G  G++E F CGPSK   L+++LE+
Sbjct:  109 ATRENKVVIIKFHASWCRACKAMAPKYQRVAEDWP----ELEFCEILFDNNKKLCKSLGIKILPYVEVIGGTLGKVEGFSCGPSKISRLQERLEV 199          
BLAST of mRNA_S-dermatodea_contig11891.1191.1 vs. uniprot
Match: A0A7S2GHN9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2GHN9_9EUKA)

HSP 1 Score: 81.6 bits (200), Expect = 9.000e-15
Identity = 39/94 (41.49%), Postives = 60/94 (63.83%), Query Frame = 3
Query:   39 AENQDKIVVVKVFAGFCRACKAFDRKYRALALDYEATGAEIKFYEMDWMQTRDLCKSLQVKKLPHLELYSGERGRLESFVCGPSKAGLLKDKLE 320
            A  +++ V +K++A +CRACKA   KY  +A D E +   ++FYE+ +   + LCKSL +K LP +E+ +G +G++ SF CGPSK   L   LE
Sbjct:   81 AAREERTVCIKIYATWCRACKAMGPKYERIAKDPEYS--HVEFYEIAFDDNKALCKSLGIKVLPVIEVVAGSKGKVTSFACGPSKMSKLTFALE 172          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11891.1191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLZ5_ECTSI3.830e-5470.08Thioredoxin domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JEA9_9PHAE3.040e-5270.87Thioredoxin domain-containing protein n=1 Tax=Ecto... [more]
A0A2V3IJC0_9FLOR1.160e-1838.18Thioredoxin-like 2-1, chloroplastic n=1 Tax=Gracil... [more]
A0A7S3ATR9_9EUKA3.900e-1840.19Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S4C0Q1_CHRCT1.100e-1741.05Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S3WN14_EMIHU6.510e-1642.11Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A7S3TUC7_9SPIT8.180e-1640.00Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A7S4A7N2_9STRA9.690e-1638.10Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S0J7Q1_9EUKA3.980e-1541.05Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S2GHN9_9EUKA9.000e-1541.49Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11891contigS-dermatodea_contig11891:2394..3866 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score185.7
Seed ortholog evalue1.5e-44
Seed eggNOG ortholog2880.D8LLZ5
KEGG koko:K03671
KEGG Pathwayko04621,ko05418,map04621,map05418
EggNOG free text desc.cell redox homeostasis
EggNOG OGsCOG0526@1,KOG0907@2759
COG Functional cat.CO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-14_002240.2
Exons2
Model size849
Cds size399
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11891.1191.1prot_S-dermatodea_contig11891.1191.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11891 2842..3864 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924222.2053874-UTR-S-dermatodea_contig11891:2393..28411622924222.2053874-UTR-S-dermatodea_contig11891:2393..2841Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11891 2394..2841 -
1694079103.9010458-UTR-S-dermatodea_contig11891:2393..28411694079103.9010458-UTR-S-dermatodea_contig11891:2393..2841Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11891 2394..2841 -
1622924222.234465-UTR-S-dermatodea_contig11891:3864..38661622924222.234465-UTR-S-dermatodea_contig11891:3864..3866Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11891 3865..3866 -
1694079103.9346905-UTR-S-dermatodea_contig11891:3864..38661694079103.9346905-UTR-S-dermatodea_contig11891:3864..3866Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11891 3865..3866 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924222.2194018-CDS-S-dermatodea_contig11891:2841..30271622924222.2194018-CDS-S-dermatodea_contig11891:2841..3027Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11891 2842..3027 -
1694079103.9140217-CDS-S-dermatodea_contig11891:2841..30271694079103.9140217-CDS-S-dermatodea_contig11891:2841..3027Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11891 2842..3027 -
1622924222.226876-CDS-S-dermatodea_contig11891:3651..38641622924222.226876-CDS-S-dermatodea_contig11891:3651..3864Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11891 3652..3864 -
1694079103.925947-CDS-S-dermatodea_contig11891:3651..38641694079103.925947-CDS-S-dermatodea_contig11891:3651..3864Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11891 3652..3864 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11891.1191.1

>prot_S-dermatodea_contig11891.1191.1 ID=prot_S-dermatodea_contig11891.1191.1|Name=mRNA_S-dermatodea_contig11891.1191.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=133bp
MIDSMDTYFQVLAENQDKIVVVKVFAGFCRACKAFDRKYRALALDYEATG
AEIKFYEMDWMQTRDLCKSLQVKKLPHLELYSGERGRLESFVCGPSKAGL
LKDKLELLLADPSDPSLGTAPPPLSSAPLSPP*
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mRNA from alignment at S-dermatodea_contig11891:2394..3866-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11891.1191.1 ID=mRNA_S-dermatodea_contig11891.1191.1|Name=mRNA_S-dermatodea_contig11891.1191.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1473bp|location=Sequence derived from alignment at S-dermatodea_contig11891:2394..3866- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGATGATTGATAGCATGGATACGTATTTTCAAGTGCTGGCGGAAAACCAA GACAAAATCGTGGTCGTGAAGGTTTTCGCGGGGTTTTGCAGGGCTTGCAA GGCGTTCGATCGCAAGTACCGGGCATTAGCCCTCGACTACGAGGCAACTG GGGCGGAAATTAAGTTCTACGAGATGGACTGGATGCAGACGAGAGATCTG TGCAAATCGTTGCAGGTGAGATTGGGGGTGTGCGAAGCTTTTTTTGTCAG GCGTATTCAAACTATTTTTAAGGGTGGACGCCATCGGTCTCTTCCCCGAG GCTGCTGCTGCTGCTGCTGCTGCTGCCCTCCGTGCCTTTCGGGTTCGCTG TGTGTTCGACCTCCGTCTGTTCGCCGCGTTCGATCCTACCACGAATCGTG TTTTTTCCCCGCAGTGGTTGCAGCTGTAATATGAATTATTTCCGCCACTC ACGGAAAGCCTTTCGGACGACCAAAGGGCTCACGCCACCGCCGTTCGTCG ACGGAACTCTGACAGGAGACCCCCACCCCCCCCCCCCCCCCCCCCCCCCC CCCCCCCCCCCCCCCCCCCCCGCCCCCCCCCACCCCCCCTCGGGCGTTTT TCCCCGGGTGGTCTTCGTGCAGCGCCGNNNNNNNNNNCACGGAGAGCCTT TCGCCACCCCAACAGGCCCCCCCCCCCCCCCGCCCCCGCCCCAACCCTCA CCCAGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACGCCGCCGCC GCCGCCGCGGCCACCCGATAACGTACCTTGGGTTGTTCTCCATGTGCGTT CTTGTGGCAACGCCGGTACGCGTGCACAATAACAAACAGGTGAAGAAGTT GCCGCACTTGGAGTTGTACTCGGGGGAGCGAGGGCGGCTAGAGTCGTTTG TCTGCGGACCGAGCAAGGCCGGGTTGTTGAAGGACAAGCTGGAATTGCTG CTCGCAGATCCGTCAGATCCTTCGCTCGGCACCGCGCCGCCCCCGCTCAG CTCCGCGCCGCTCAGTCCGCCGTGATGGCTGCCAACGTTGCTGGTGCACG GGGGGGGCGGGGGGCGCAGAGTTATCGTGCGGACTCGGACGGTAAATCAT ATTATCGTGCTGGTGGGTTCGCAGTAGGCCCATGTACCAGCGTAGAAAAA GTTTAGGCGAGGAGTTTAGGCTATTACGCACCTTTGTGCAAACGGGACGG TTTTGTGTACATTGAGGGGGGGTAACGCAGGTGTTGTTTATTTCCCATGT ACTAGTCGTGCTGTACCCGCCTGAGGTGGTTGCTCTCGGCGATCGCTGCT CAGCCTATTCAACGAGTTTTTTGTACCCTCAGGGGGTTGCGGGGGCGGGC GGCCGAGCGGTTACACGAGAGTTGTTATCATATTAATAGCAGTCACGGTT TCCATGAGGTTGGATTCCAAGTGGCGCACCCGCGCTCACGTCGCCTCCAG CGTTTGTAAATCCTGCTTGTTTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11891:2394..3866-

>mRNA_S-dermatodea_contig11891.1191.1 ID=mRNA_S-dermatodea_contig11891.1191.1|Name=mRNA_S-dermatodea_contig11891.1191.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at S-dermatodea_contig11891:2394..3866- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATTGATAGCATGGATACGTATTTTCAAGTGCTGGCGGAAAACCAAGA
CAAAATCGTGGTCGTGAAGGTTTTCGCGGGGTTTTGCAGGGCTTGCAAGG
CGTTCGATCGCAAGTACCGGGCATTAGCCCTCGACTACGAGGCAACTGGG
GCGGAAATTAAGTTCTACGAGATGGACTGGATGCAGACGAGAGATCTGTG
CAAATCGTTGCAGATGATTGATAGCATGGATACGTATTTTCAAGTGCTGG
CGGAAAACCAAGACAAAATCGTGGTCGTGAAGGTTTTCGCGGGGTTTTGC
AGGGCTTGCAAGGCGTTCGATCGCAAGTACCGGGCATTAGCCCTCGACTA
CGAGGCAACTGGGGCGGAAATTAAGTTCTACGAGATGGACTGGATGCAGA
CGAGAGATCTGTGCAAATCGTTGCAGGTGAAGAAGTTGCCGCACTTGGAG
TTGTACTCGGGGGAGCGAGGGCGGCTAGAGTCGTTTGTCTGCGGACCGAG
CAAGGCCGGGTTGTTGAAGGACAAGCTGGAATTGCTGCTCGCAGATCCGT
CAGATCCTTCGCTCGGCACCGCGCCGCCCCCGCTCAGCTCCGCGCCGCTC
AGTCCGCCGTGAGTGAAGAAGTTGCCGCACTTGGAGTTGTACTCGGGGGA
GCGAGGGCGGCTAGAGTCGTTTGTCTGCGGACCGAGCAAGGCCGGGTTGT
TGAAGGACAAGCTGGAATTGCTGCTCGCAGATCCGTCAGATCCTTCGCTC
GGCACCGCGCCGCCCCCGCTCAGCTCCGCGCCGCTCAGTCCGCCGTGA
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