mRNA_S-dermatodea_contig1189.1188.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1189.1188.1
Unique NamemRNA_S-dermatodea_contig1189.1188.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1189.1188.1 vs. uniprot
Match: D8LAV3_ECTSI (Methylase-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAV3_ECTSI)

HSP 1 Score: 326 bits (835), Expect = 1.020e-100
Identity = 172/272 (63.24%), Postives = 204/272 (75.00%), Query Frame = 1 
Query:  562 ARDAIDMAQAALGRRDSAAAELKQGVAATGMASAAXXXXXXXXXXXXXXXXXLSEEXXXXXQEE--EPTREPDSARTTRNNPAASHSHLSHLLWRQVAGPGDTVVDCTAGNGYDTLELAKIVALNDGQGKIYAMDVQDRALDATRARLDAELGQTAVKRVKLTKGNFRQLPAELGPMSVQLMVYNLGWLPGGDKSITTELEDTLESIEAAKRLMKSGGMISVMLYRGHAEGERETEAVLEYARGLTHYHWRVYVHERVNRPGSPVLLTIYRL 1371
            A+DAI M QAAL RRDSA  EL            A                   +       EE  + T+EP+SAR +RNNPAASHSH++HLLWRQVAGPGDTV+DCTAGNG+D+LELAKIVAL DG G +Y MDVQ+RA++ATR RL +ELG+ A+KR  L  GNFR++PAEL P+SVQL+VYNLGWLPGGDKSITT+LEDTLESIEAAKR++K GGMISVMLYRGHAEG+RETEAV +YA GL H  WRV++HER+NR  SP LLTI++L
Sbjct:  191 AQDAIGMVQAALDRRDSATVEL-----------GAESSEDTPVAAETAVLTSRGDGSVSDGGEEGGDGTKEPESARWSRNNPAASHSHMAHLLWRQVAGPGDTVLDCTAGNGHDSLELAKIVALKDGVGSLYVMDVQERAIEATRERLRSELGELALKRSTLINGNFREMPAELEPLSVQLVVYNLGWLPGGDKSITTKLEDTLESIEAAKRVVKHGGMISVMLYRGHAEGKRETEAVRDYAAGLAHSQWRVFMHERINRADSPELLTIFKL 451
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BLAST of mRNA_S-dermatodea_contig1189.1188.1 vs. uniprot
Match: A0A6H5JPN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPN0_9PHAE)

HSP 1 Score: 317 bits (811), Expect = 4.220e-97
Identity = 170/270 (62.96%), Postives = 201/270 (74.44%), Query Frame = 1 
Query:  562 ARDAIDMAQAALGRRDSAAAELKQGVAATGMASAAXXXXXXXXXXXXXXXXXLSEEXXXXXQEEEPTREPDSARTTRNNPAASHSHLSHLLWRQVAGPGDTVVDCTAGNGYDTLELAKIVALNDGQGKIYAMDVQDRALDATRARLDAELGQTAVKRVKLTKGNFRQLPAELGPMSVQLMVYNLGWLPGGDKSITTELEDTLESIEAAKRLMKSGGMISVMLYRGHAEGERETEAVLEYARGLTHYHWRVYVHERVNRPGSPVLLTIYRL 1371
            A+DAI M QAAL RRDSAA EL       G  S+                   S +          T+EP+SAR +RNNPAASHSH++HLLWRQVAGPGDTV+DCTAGNG+D+LELAKIVAL DG G +Y MD  +RA++ATR RL +ELG+ A+KR  L   NFR++PAEL P+SVQL+VYNLGWLPGGDKSITT LEDTLESIEAAKR++K GGMISVMLYRGHAEG+RETEAV +YA  L H  WRV++HER+NR GSP LLTI++L
Sbjct:  205 AQDAIGMVQAALDRRDSAAVEL-------GAKSSEDTQVAAEAAVLTSRGGEESGDG---------TKEPESARWSRNNPAASHSHMAHLLWRQVAGPGDTVLDCTAGNGHDSLELAKIVALKDGVGSLYIMD--ERAIEATRERLRSELGELALKRSTLINSNFREMPAELEPLSVQLVVYNLGWLPGGDKSITTTLEDTLESIEAAKRVVKHGGMISVMLYRGHAEGKRETEAVRDYAASLAHSQWRVFMHERINRAGSPELLTIFKL 456
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BLAST of mRNA_S-dermatodea_contig1189.1188.1 vs. uniprot
Match: A0A0G4GWR6_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GWR6_VITBC)

HSP 1 Score: 174 bits (440), Expect = 1.490e-46
Identity = 88/197 (44.67%), Postives = 129/197 (65.48%), Query Frame = 1 
Query:  793 NNPAASHSHLSHLLWRQVAGPGDTVVDCTAGNGYDTLELAKIVALNDG----QGKIYAMDVQDRALDATRARLDAELGQTAVKRVKLTKGNFRQLPAELGPMSVQLMVYNLGWLPGGDKSITTELEDTLESIEAAKRLMKSGGMISVMLYRGHAEGERETEAVLEYARGLTHYHWRVYVHERVNRPGSPVLLTIYRL 1371
            ++P ASH  LS LLW+Q   PG   VD T GNG D+L L+ ++  +DG    + ++  +DVQ  A+ +TR+ L  EL    ++R++L   +  + P  +   SV ++VYNLG+LPGGDKS+TT  + T+ S+ AA +L+  GG+ISVMLYRGH EG  E++ V+ +A  L    WRV++HE +NRP SP L+T+YRL
Sbjct:    9 SSPLASHLPLSRLLWKQGLKPGGRAVDATCGNGKDSLFLSTLIFPSDGDDETEAELICIDVQREAIGSTRSLLAEELRPPHLERIRLFHQSHERFPDCIADNSVDVIVYNLGYLPGGDKSVTTRHDTTITSLTAALKLIVKGGLISVMLYRGHPEGTVESDGVISWASQLPADEWRVFLHEPLNRPTSPALMTLYRL 205
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BLAST of mRNA_S-dermatodea_contig1189.1188.1 vs. uniprot
Match: A0A836C882_9STRA (Putative rRNA methylase-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C882_9STRA)

HSP 1 Score: 164 bits (416), Expect = 3.170e-43
Identity = 85/198 (42.93%), Postives = 122/198 (61.62%), Query Frame = 1 
Query:  820 LSHLLWRQVAGPGDTVVDCTAGNGYDTLELAKIV---------ALNDGQGKIYAMDVQDRALDATRARLDAELGQTAVKRVKLTKGNFRQLPAELGP----MSVQLMVYNLGWLPGGDKSITTELEDTLESIEAAKRLMKSGGMISVMLYRGHAEGERETEAVLEYARGLTHYHWRVYVHERVNRP-GSPVLLTIYRL 1371
            L+HLLW+    PGD V+DCTAG GYD+L LA+++         A    QG++  +DVQ+ A+  T+ARL   L   A++R+ + + +F +LP    P     SV L+ YNLG+LPG DKS+ + ++DTL+S+  A +L+K GG ISV  Y GH EG  E  AV E+  GL    WRV+ H R+N P G P+L+  Y++
Sbjct:    2 LAHLLWKSAVSPGDIVIDCTAGKGYDSLVLARLLFPDSALDGEAAAAAQGQLVCIDVQESAVAQTQARLQQALPPQAMQRISVLQQSFCELPPACEPPIAERSVALVAYNLGFLPGSDKSVCSTVQDTLDSLNKASKLVKLGGAISVTCYPGHEEGAAEVAAVKEWGAGLATREWRVFEHSRLNSPEGVPLLVVAYKV 199
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BLAST of mRNA_S-dermatodea_contig1189.1188.1 vs. uniprot
Match: A0A0U5JHE0_9BACT (Putative rRNA methylase n=1 Tax=Candidatus Protochlamydia naegleriophila TaxID=389348 RepID=A0A0U5JHE0_9BACT)

HSP 1 Score: 161 bits (408), Expect = 3.780e-42
Identity = 81/187 (43.32%), Postives = 118/187 (63.10%), Query Frame = 1 
Query:  808 SHSHLSHLLWRQVAGPGDTVVDCTAGNGYDTLELAKIVALNDGQGKIYAMDVQDRALDATRARLDAELGQTAVKRVKLTKGNFRQLPAELGPMSVQLMVYNLGWLPGGDKSITTELEDTLESIEAAKRLMKSGGMISVMLYRGHAEGERETEAVLEYARGLTHYHWRVYVHERVNRPGSPVLLTIYR 1368
            SH  L+H  W ++  PGD  +D T GNG+DTL+L ++ AL   +G+IYA+D Q  A++ T+A L+  L  + ++ + L  G   Q PA + P S++L+VYNLG+LPGGDK+ TTE   TL S++ A  L+  GG ISV  Y GH EG RE EA+LE+ + L+   W    H+ +NR  +P LL + +
Sbjct:   10 SHLDLAHHYWSKLLKPGDRAIDATCGNGHDTLKLCQL-ALCQSEGEIYALDRQSEAIENTKAYLNQNLLPSQIEHIHLILGCHSQFPASITPTSIKLIVYNLGYLPGGDKAETTETSTTLLSLQEALNLVVPGGAISVTCYPGHLEGAREEEAILEWIKTLSPLEWSACHHKWINRRHAPSLLLLQK 195
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BLAST of mRNA_S-dermatodea_contig1189.1188.1 vs. uniprot
Match: A0A2H9SWP1_9BACT (rRNA methyltransferase n=1 Tax=Parachlamydia sp. TaxID=2052048 RepID=A0A2H9SWP1_9BACT)

HSP 1 Score: 161 bits (407), Expect = 4.910e-42
Identity = 85/187 (45.45%), Postives = 122/187 (65.24%), Query Frame = 1 
Query:  808 SHSHLSHLLWRQVAGPGDTVVDCTAGNGYDTLELAKIVALNDGQGKIYAMDVQDRALDATRARLDAELGQTAVKRVKLTKGNFRQLPAELGPMSVQLMVYNLGWLPGGDKSITTELEDTLESIEAAKRLMKSGGMISVMLYRGHAEGERETEAVLEYARGLTHYHWRVYVHERVNRPGSPVLLTIYR 1368
            SH  L+H  W  +  PGDTV+D T GNG+DTL+LA++ AL+  QG++  +D+Q+++L AT ARL   L    ++RV+L        P ++ P SV+L+VYNLG+LP GDKS TT  + T+ES++AA  L+  GG+I V  Y GH EGE+E +AVL++ RGL  + W     + +NR  +P LL I R
Sbjct:   10 SHLDLAHQYWTILVRPGDTVIDATCGNGHDTLKLAQL-ALHSDQGQVIGIDLQEQSLLATNARLMEHLSPDLLRRVQLICSCHSSFP-DIPPKSVRLIVYNLGYLPKGDKSRTTRAKTTIESLQAAFPLLMPGGVICVTCYPGHEEGEKEEKAVLDFVRGLDPHEWCCTYQQWMNRQKAPGLLLIQR 194
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BLAST of mRNA_S-dermatodea_contig1189.1188.1 vs. uniprot
Match: A0A5C7WT25_9PROT (Methyltransferase domain-containing protein n=1 Tax=Nitrosomonas sp. TaxID=42353 RepID=A0A5C7WT25_9PROT)

HSP 1 Score: 160 bits (404), Expect = 1.280e-41
Identity = 81/189 (42.86%), Postives = 118/189 (62.43%), Query Frame = 1 
Query:  808 SHSHLSHLLWRQVAGPGDTVVDCTAGNGYDTLELAKIVALNDGQGKIYAMDVQDRALDATRARLDAELGQTAVKRVKLTKGNFRQLPAELGPMSVQLMVYNLGWLPGGDKSITTELEDTLESIEAAKRLMKSGGMISVMLYRGHAEGERETEAVLEYARGLTHYHWRVYVHERVNRP-GSPVLLTIYRL 1371
            SH  L+H  W+Q+   GDTV+D T GNG+DTL LA++V ++D  G +Y +D+Q  A+D +R  L  EL    ++R+ L +      P  +   SV+L+VYNLG+LPGG+KS+TT +E TL+S+ AA +L+  GG +S+ LY GH EG  E   VL   R L+   W    H+ +NRP  +P LL + +L
Sbjct:    9 SHLDLAHTYWKQLVSIGDTVIDATCGNGHDTLMLARLV-IDDSAGDVYGLDIQSTAIDNSRQLLHQELPTHHLQRIHLLQQCHSTFPDMITAASVKLIVYNLGYLPGGNKSLTTRVETTLQSLNAAVKLLSPGGCLSITLYPGHPEGAIEESQVLPLIRSLSSSEWSCCHHQWINRPISAPSLLLVQKL 196
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BLAST of mRNA_S-dermatodea_contig1189.1188.1 vs. uniprot
Match: A0A7W1GVU4_9BACT (Class I SAM-dependent methyltransferase n=1 Tax=Parachlamydiaceae bacterium TaxID=2052176 RepID=A0A7W1GVU4_9BACT)

HSP 1 Score: 157 bits (396), Expect = 1.710e-40
Identity = 78/187 (41.71%), Postives = 116/187 (62.03%), Query Frame = 1 
Query:  808 SHSHLSHLLWRQVAGPGDTVVDCTAGNGYDTLELAKIVALNDGQGKIYAMDVQDRALDATRARLDAELGQTAVKRVKLTKGNFRQLPAELGPMSVQLMVYNLGWLPGGDKSITTELEDTLESIEAAKRLMKSGGMISVMLYRGHAEGERETEAVLEYARGLTHYHWRVYVHERVNRPGSPVLLTIYR 1368
            SH  L+H  W+++   GD+V+D T GNG DTL LA++  L +G+G IYAMD+Q +ALD+ R  L   L       ++   G   Q P E+ P++++L+VYNLG+LPGGDK  TT++E TL+S+E+AK L+  GG++ +  Y GH  G  E E ++ +A  L +  W    H  +NR  SP LL + +
Sbjct:   10 SHLDLTHQYWKKLIQQGDSVIDATCGNGKDTLCLAQLT-LAEGKGIIYAMDIQKQALDSARHYLSMHLSPQQFLDIEFILGCHSQFPVEIKPLTIKLIVYNLGYLPGGDKKQTTQMESTLKSLESAKNLIAPGGVLCITCYPGHDAGAIEEEGLMIFAANLPNTEWSCCHHRWLNREKSPSLLLLQK 195
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BLAST of mRNA_S-dermatodea_contig1189.1188.1 vs. uniprot
Match: UPI001BC91B08 (methyltransferase domain-containing protein n=1 Tax=Parachlamydia sp. AcF125 TaxID=2795736 RepID=UPI001BC91B08)

HSP 1 Score: 156 bits (395), Expect = 2.660e-40
Identity = 82/187 (43.85%), Postives = 115/187 (61.50%), Query Frame = 1 
Query:  808 SHSHLSHLLWRQVAGPGDTVVDCTAGNGYDTLELAKIVALNDGQGKIYAMDVQDRALDATRARLDAELGQTAVKRVKLTKGNFRQLPAELGPMSVQLMVYNLGWLPGGDKSITTELEDTLESIEAAKRLMKSGGMISVMLYRGHAEGERETEAVLEYARGLTHYHWRVYVHERVNRPGSPVLLTIYR 1368
            SH  ++H  W+++  PGDTV+D T GNG+DTL LAK+V LN   GK+  MDVQ +A+  T+ RL  E     ++R+ L        P +  P  V+L+VYNLG+LP GDKS+TT +  TL S++AA  ++  GG IS+  Y GHAEG+RE +A+L + RGL    W       +NR  +P LL I +
Sbjct:   10 SHLDVAHHYWKKLVQPGDTVIDATCGNGHDTLVLAKLV-LNSPSGKVIGMDVQSQAIKNTQERLAKEFSANQMQRIHLHCACHSTFPVQ-APHVVKLIVYNLGYLPNGDKSLTTCVNTTLLSLQAALSIITPGGAISLTCYPGHAEGKREEQAILSFVRGLQPQEWSCSYQTWINRHQAPGLLFIQK 194
[Close]
BLAST of mRNA_S-dermatodea_contig1189.1188.1 vs. uniprot
Match: A0A7W1U209_9BACT (Methyltransferase domain-containing protein n=1 Tax=Parachlamydiaceae bacterium TaxID=2052176 RepID=A0A7W1U209_9BACT)

HSP 1 Score: 155 bits (392), Expect = 5.140e-40
Identity = 78/184 (42.39%), Postives = 115/184 (62.50%), Query Frame = 1 
Query:  811 HSHLSHLLWRQVAGPGDTVVDCTAGNGYDTLELAKIVALNDGQGKIYAMDVQDRALDATRARLDAELGQTAVKRVKLTKGNFRQLPAELGPMSVQLMVYNLGWLPGGDKSITTELEDTLESIEAAKRLMKSGGMISVMLYRGHAEGERETEAVLEYARGLTHYHWRVYVHERVNRPGSPVLLTI 1362
            H  ++H LW +   PGDTV+D T GNG DT  LAK+ ALN  QG ++A+D+Q +A+  TR  L+ EL Q    R+   +      P  +   SV+L++YNLG+LPG +K++TT  E TL+S++ A++L+   G+I V  Y GH EG++E  A+L+Y R L    W+V   + VNR G+P LL +
Sbjct:    7 HLDMAHSLWHESVQPGDTVIDATCGNGQDTRILAKL-ALNAHQGTLFALDIQAQAIVTTRNLLEQELPQDLFNRITFLEQCHSHFPEAVLENSVRLIIYNLGYLPGANKALTTRTETTLQSLQEAQKLLLENGIICVTCYPGHDEGKKEEAALLDYVRSLPTTEWQVSFTQWVNRVGAPSLLVL 189
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1189.1188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LAV3_ECTSI1.020e-10063.24Methylase-related n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5JPN0_9PHAE4.220e-9762.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0G4GWR6_VITBC1.490e-4644.67Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A836C882_9STRA3.170e-4342.93Putative rRNA methylase-domain-containing protein ... [more]
A0A0U5JHE0_9BACT3.780e-4243.32Putative rRNA methylase n=1 Tax=Candidatus Protoch... [more]
A0A2H9SWP1_9BACT4.910e-4245.45rRNA methyltransferase n=1 Tax=Parachlamydia sp. T... [more]
A0A5C7WT25_9PROT1.280e-4142.86Methyltransferase domain-containing protein n=1 Ta... [more]
A0A7W1GVU4_9BACT1.710e-4041.71Class I SAM-dependent methyltransferase n=1 Tax=Pa... [more]
UPI001BC91B082.660e-4043.85methyltransferase domain-containing protein n=1 Ta... [more]
A0A7W1U209_9BACT5.140e-4042.39Methyltransferase domain-containing protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1189contigS-dermatodea_contig1189:6850..12821 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score328.6
Seed ortholog evalue4.7e-87
Seed eggNOG ortholog2880.D8LAV3
EggNOG free text desc.Putative rRNA methylase
EggNOG OGs2QQ3B@2759,COG0500@1
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionmethylase-related
Ec32 orthologEc-27_006280.1
Exons8
Model size2156
Cds size1356
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1189.1188.1prot_S-dermatodea_contig1189.1188.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1189 6868..12039 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924221.8779354-UTR-S-dermatodea_contig1189:6849..68671622924221.8779354-UTR-S-dermatodea_contig1189:6849..6867Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1189 6850..6867 +
1694079103.7037246-UTR-S-dermatodea_contig1189:6849..68671694079103.7037246-UTR-S-dermatodea_contig1189:6849..6867Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1189 6850..6867 +
1622924221.9936948-UTR-S-dermatodea_contig1189:12039..128211622924221.9936948-UTR-S-dermatodea_contig1189:12039..12821Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1189 12040..12821 +
1694079103.7976263-UTR-S-dermatodea_contig1189:12039..128211694079103.7976263-UTR-S-dermatodea_contig1189:12039..12821Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1189 12040..12821 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924221.886781-CDS-S-dermatodea_contig1189:6867..69121622924221.886781-CDS-S-dermatodea_contig1189:6867..6912Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1189 6868..6912 +
1694079103.7221012-CDS-S-dermatodea_contig1189:6867..69121694079103.7221012-CDS-S-dermatodea_contig1189:6867..6912Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1189 6868..6912 +
1622924221.8947861-CDS-S-dermatodea_contig1189:7517..79221622924221.8947861-CDS-S-dermatodea_contig1189:7517..7922Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1189 7518..7922 +
1694079103.7300768-CDS-S-dermatodea_contig1189:7517..79221694079103.7300768-CDS-S-dermatodea_contig1189:7517..7922Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1189 7518..7922 +
1622924221.9026916-CDS-S-dermatodea_contig1189:8596..87771622924221.9026916-CDS-S-dermatodea_contig1189:8596..8777Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1189 8597..8777 +
1694079103.7370965-CDS-S-dermatodea_contig1189:8596..87771694079103.7370965-CDS-S-dermatodea_contig1189:8596..8777Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1189 8597..8777 +
1622924221.910814-CDS-S-dermatodea_contig1189:8837..90241622924221.910814-CDS-S-dermatodea_contig1189:8837..9024Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1189 8838..9024 +
1694079103.74766-CDS-S-dermatodea_contig1189:8837..90241694079103.74766-CDS-S-dermatodea_contig1189:8837..9024Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1189 8838..9024 +
1622924221.919773-CDS-S-dermatodea_contig1189:9671..98011622924221.919773-CDS-S-dermatodea_contig1189:9671..9801Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1189 9672..9801 +
1694079103.7588835-CDS-S-dermatodea_contig1189:9671..98011694079103.7588835-CDS-S-dermatodea_contig1189:9671..9801Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1189 9672..9801 +
1622924221.9472742-CDS-S-dermatodea_contig1189:10476..106131622924221.9472742-CDS-S-dermatodea_contig1189:10476..10613Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1189 10477..10613 +
1694079103.7669532-CDS-S-dermatodea_contig1189:10476..106131694079103.7669532-CDS-S-dermatodea_contig1189:10476..10613Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1189 10477..10613 +
1622924221.9644303-CDS-S-dermatodea_contig1189:10834..109761622924221.9644303-CDS-S-dermatodea_contig1189:10834..10976Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1189 10835..10976 +
1694079103.7758348-CDS-S-dermatodea_contig1189:10834..109761694079103.7758348-CDS-S-dermatodea_contig1189:10834..10976Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1189 10835..10976 +
1622924221.9777067-CDS-S-dermatodea_contig1189:11910..120391622924221.9777067-CDS-S-dermatodea_contig1189:11910..12039Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1189 11911..12039 +
1694079103.78547-CDS-S-dermatodea_contig1189:11910..120391694079103.78547-CDS-S-dermatodea_contig1189:11910..12039Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1189 11911..12039 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1189.1188.1

>prot_S-dermatodea_contig1189.1188.1 ID=prot_S-dermatodea_contig1189.1188.1|Name=mRNA_S-dermatodea_contig1189.1188.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=452bp
MSIFCANCGGGIGVKRGLRACVMMAALASPSKAFLPTLPTLLRQSRNALR
TSALQNPASSARPRRALTSLSAADNNSSNSARDAAMAAVRAAEDELGRQV
DDLGDAAAGADDVREAVAAARAAARGAMDSLRRGGAGFPGGAAAAEGPRD
DVTSPARAAVEAALSAVAGAETTPPTESFSAARDAIDMAQAALGRRDSAA
AELKQGVAATGMASAAGAGVGVDNGDGGGSGGGLSEEGEGGGQEEEPTRE
PDSARTTRNNPAASHSHLSHLLWRQVAGPGDTVVDCTAGNGYDTLELAKI
VALNDGQGKIYAMDVQDRALDATRARLDAELGQTAVKRVKLTKGNFRQLP
AELGPMSVQLMVYNLGWLPGGDKSITTELEDTLESIEAAKRLMKSGGMIS
VMLYRGHAEGERETEAVLEYARGLTHYHWRVYVHERVNRPGSPVLLTIYR
L*
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mRNA from alignment at S-dermatodea_contig1189:6850..12821+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1189.1188.1 ID=mRNA_S-dermatodea_contig1189.1188.1|Name=mRNA_S-dermatodea_contig1189.1188.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5972bp|location=Sequence derived from alignment at S-dermatodea_contig1189:6850..12821+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTCGCGGTGTAGTTCCGATGAGCATTTTCTGCGCCAACTGTGGCGGTGG
TATCGGTGTCAAGGTGAGAGCAGTGGTCTCGCCAGTGTAGTTTGCACAGT
GTGCAGGAACGCACATAGCTTAGATGCTGTTCTCGATGTAATCCTGAGAC
ATTGACTGGAAAACGTATGCTGAGATGCATGTACCAGGTACTTGGTAGGT
TTTCACACAGCTGTGCGCTGTCAGTGCTTGCGCTCACCAGTCGACCTGCG
CTATGTCGGGAGAGCAAACCAGCAGGCTGTGCTTCTCCCTGCTCCTACCT
CTCAGCATCTCGTGCACGGCCTCCGTTAAGACCAAAGCACTAACTGCCTT
CTACAAGTGCAGTAAGTAGTACAGAGGCAGTCAGCCCCAAGACATGATTG
ACGATTATGCCGCAAAACTGGTTGAAGTATAGTTGTACTGCTGCTGTACA
TCTATCTCTGCTTCTGGCTTCTCCCATTTGAACCATGTGCGTAAAGACCC
CCACATGCCCCACGGCTCCAAACAATAGCCACTACCCGAGCTGCTCACCG
AACACAGACTCGATGCTCGCATGAAATCTGCAGTAAAGTCACGTCTCGAA
CTCACAATCTCCCCCGCACGCCCCCCCCCCCCGATACATCCTATACACAC
CATACCACACCACAAAAGCGCGGTCTGCGCGCGTGCGTGATGATGGCAGC
CCTGGCCTCCCCCTCCAAGGCCTTCCTCCCGACGCTCCCGACCCTGCTGC
GCCAATCCCGCAACGCCCTCCGAACATCCGCGCTTCAAAATCCCGCATCT
TCGGCACGACCAAGGCGAGCGCTCACCTCCTTGTCCGCAGCGGACAACAA
CAGCAGCAACAGTGCCAGAGATGCAGCGATGGCGGCCGTGCGAGCTGCCG
AGGACGAGCTGGGTCGGCAAGTGGACGACTTGGGCGACGCCGCGGCGGGA
GCGGACGATGTGCGAGAGGCAGTCGCCGCCGCTCGCGCGGCCGCTCGCGG
CGCCATGGACTCGCTACGGAGAGGCGGTGCTGGGTTTCCCGGCGGGGCAG
CGGCGGCCGAGGGTCCGCGGGATGTGTTCGCGTCGACAACGGTGAGCCGT
GAGCCGGCATTTCCCCCCTCTCTGTGGCCCTATTTTGCTGGAGACTACAA
CAGTAGTTGGGTCTGATGCGCGATTGCTTGGAGCTATGTATGTGCCGGAA
CGTGGTTGCGTTTTGGGCTTGGATCTCTGGGCTTGTGACCAGGTGCGGCC
CTGCGCGTAGCCCCGTCCCGTACGCAAGTGCTTCAGCCGTAGGAGGGCCG
AGGGAGCCGCACAACAAGCCGCGCGGGCCGCGCGCGTGGGTGGGTGCTCG
TACAGTACGGTACATGGCTCGTGCCGCGCGTGCCGTGCTGCGCCCACGGC
GTGGCATAGCAGCCAGTCGCGCATGGACGTGTGTGAAAGGCGGTAACTGT
GTTGAACGCCCGGCGTTGCGATGATGCTATCAATATTGCTCCTGTGCGTG
CCCTCCTGTTTCCATTGAAGCCGCAGTACCGCAAGCGTAACAGGCCAACA
ATTGCAACAGTATGATAGGTTGTGAGCCACGGCGCTGATCGAGAACAACC
GAAACATTATATAATTTTTGCACTTTGCTAATAATGCCCGTACTACAAGC
ACCCCCCCCCCCCCCTCCCGCCCACCCACCCCCACGGTTCGCTGCGACCA
CACCATATATAACTCTCGGCGGTGCTCCCTTAAACCCGGAACGGCAGGAC
GTGACCTCGCCCGCCCGCGCCGCGGTGGAAGCAGCACTTTCGGCGGTGGC
AGGAGCCGAAACCACCCCGCCAACTGAATCATTTTCCGCCGCTCGCGACG
CGATCGATATGGCGCAGGCCGCCCTCGGCCGCCGAGATTCGGCGGCGGCG
GAACTAAAACAAGGCGTTGCTGCCACCGGTTCGGATTCGGGGGACGGCGG
CGCAGCTTGGCGGGCGGTCGATGCCGACGGCACTGAAGGCATGGCGTCGG
CAGCGGGGGCGGGGGTTGGCGTTGACAATGGCGATGGTGGTGGTAGTGGT
GGTGGTTTGTCTGAAGAAGGAGAGGGCGGGGGACAGGAGGAGGAGCCCAC
GAGGGAGCCCGACTCGGCGCGCACGACTCGGAACAACCCCGCCGCGTCCC
ACAGCCATCTGTCCCATCTGCTTTGGTGCGGTTTGGTTTTAGAGTGTGTT
CATGTGTGTTCATGATTGTTTCTGGCTTTGAAGCCGTCGGTTTTTTTTTC
GAAATCGCCACTCCTCACTTGCATGGTTCACACGCACGACTTGGAAACAA
AAAAAACGCCGCGCCCCACAGCCACCGCACCGCGCCCCCAAACACCCATC
TGCTCCTCGTCTTCTTTGCTCTCTGGTGCGCTTTTTGGTGCGCTACTCTG
CTCGAATGGAAAATTGAATATTGCTTGTGTGTTTCCCCTCCCTTTGTTGT
GGGCGTGTTTTTGTTAGCCTTCGTGTTTTCGTGCGAGAGCTTGTGGGGTT
TCAAGGTGTGGTACAGTAGCAAGAGCCTTCCCCGACTTTCTTTTTGCGGG
TGGGTGTTGAGGCATGGAACTCCCGGTTGCTCACGAGCACCTCGACCACC
ACGGCGCGTTGTTGACCAGAGTTCACGACGACCACACCCCACGTACATGA
TACGATACGGGAGTATGTATGTATAATACGGCAGCGGGTTTGGCCATAGG
GGCCCCTTGTTCGTGTTCGTGATGGATGTGATGGATGTCACAGAAGAACA
GGGATGCCGGCGCCTGTCGTTCCTTGCCCTTGCGATACCAAACGCTGCGC
TTGCGTGTCCGACCCTCGCCAGGAGACAAGTCGCGGGCCCGGGAGACACG
GTGGTGGACTGCACGGCGGGGAATGGCTATGACACCCTCGAGCTCGCGAA
GATCGTGGCGCTGAACGACGGCCAGGGGAAGATTTACGCCATGGACGTTC
AGGTGAACGCGCGAAAACGAAAGGCCTTCCAGTGGGGGCCTGCTGTTGTG
CGTGTGTTTTGTTTTTTGTTCTCACGGGAAGGAAAGCTGTTGGGATATCG
CGAGGCGCAGGGTTGTACACACTTTCGGCGGCACTGTGTCATGGTACGTA
CGGTGCGGTTGGACGCGTAACCGTCACGACACGGAGGAGGGAGATGCGGT
GGGATGACGTGTCGCGAGTAACGCGATGCCGTGGCACACGATTGTATAGG
TCTCCGTCGTGGACACCCAGAGGAAGCTTCTGCTGCAGAGTGTGATGTTT
TGTCTCGGGGGTAGGTCTATCGTGATCAACGTTCGCACCGCGGGGATGAC
ACGAGGGCATGGCATGCCGAGGGCCATGGATCCCCCGAGGAACTTGTCGG
AGTGCCGTTCACTTTCGGAGCCTGAACCCCCATCCGCGCCCCCGCCATAG
AACCACACTGATGCCAAGCCTTGTGCTGGCACGCACCCCCCATCCCCACA
CCCCCCCTTCGCCATTTGTCTTACCAACGCCAACCTTGCCGAAGAAGCCT
GTTTAGTCAGGAAAGTTACGCAATACTCTTGCCGCGCCCTGCCGTGTCTT
GGCGGGTATCTTACCACTGGGCGCGCGTCGCTCTGCTTTCGTCCCCGGCG
CGGTGTTTACTCTCTGGCGATCTTCAGGATCGAGCTCTGGATGCCACACG
CGCGAGGCTGGATGCGGAGCTGGGCCAAACCGCCGTGAAGCGTGTCAAGC
TCACCAAGGGGAACTTCCGGCAGCTGCCTGCGGAGCTGGGGCCCATGTCC
GTGCAGCTGATGGTGTGAGTAAAGGCCGCGCCCCTCCTGTAGGCGCCGGA
TGCATATTTTCGAGTAGGTGCTTGGGGTGCTTCGTGGTGATTACATGTTA
TCGTAGTTTCAGCGGTTTCTCGCCGTTTCCTCCGGGAGAAATCCTCTCTA
TCCCCCGTAAAATACAAATACACGGTTGTCTGGCTCACACATTTTGCCTT
GAATATATGTTTTTTCTCGATGGTCACAACAACAGTTATAACCTGGGGTG
GCTGCCGGGGGGCGATAAGTCGATAACGACGGAGCTGGAGGATACGTTGG
AGAGCATTGAGGCCGCGAAACGTCTGATGAAGAGCGGCGGCATGATAAGC
GTCATGCTGTACAGGGGCCACGCCGAGGTGTGTACAGCTCTATATCGTCG
AAGCTCTTCCTACTTTCTATAGTAGAGTTCGGGCTGCATCGCGACAGGAC
GCTTGAATGATATGGAAGTGATGGCTCATTCGTTGCTACAGCGGGTTGAG
ATTCAGGATCTTGCCGGATTGTGTAGTCGGTGCACGACTGATTAGTGCTC
TACAGCGCGACGACATTTCTGGGCTTCTCGGCGCGCACGCCAGCGCCAGG
CGCCTTGCCTTGTTGGCTTTGGTTCGGACGTCGAGGACACTGGAAAGCTC
TATGCTGCTTTTACTCGTAAGAATCAAGTACAAGTAAAGGCTATAATAAC
TATTTGCTTTTGTTCCAAAACATGAGGGCATGTGATTCCACATTTTTCGC
TGTTGAGCAGCTATACTCTTGTGTTTTGGGCCGCCCCATCCCCAACATTG
CGAGAAAAAACGAAGTGCCAAGGTTGAAGCGCTTCCGCCTACCTACTATG
TAAAGACCATTCCCAAAGGAACATGATGACGTGGACCCCGACGAGTGGGC
ACTCGCTTGTTTTGATAGTTTTTTTCGGTATGCCGTACATCCATCACTGG
CGGGAATAGGCCCATAAGCTGCAAAGGCGGCGACATGTCCAATAGTGATT
AATGCGTTGTATTTTGTCAAACGTTTCCTGACTACCGCGCGCCCGCTGAT
TTTTTATTGAACACGGACGCGCGATTATGCGCAAGACCGCGACCCGCCCC
CTCATGGCGAACGTACTCCGGGTCTGTGTTGCCATCGGATTTTCATACAA
CCCCTGCTACCACGACGCTGCAGATACCTGTCTTGGTATCGCTCGTTTTT
TACGAAGAATCGCGGCGTTTCGTGAGTGTTCATGCTCCCTCCAACCCGTA
CACATGCGATCGTCCCTGTGACGTGTATATCCCCCCTACCCCCCCTCCCC
GCCCCCCCCAGGGCGAACGGGAGACAGAAGCCGTGCTTGAGTACGCAAGA
GGACTTACCCACTACCACTGGCGCGTGTATGTCCACGAGAGAGTCAACCG
ACCAGGATCCCCGGTACTTCTCACGATATACAGGCTCTGAAACGGCTCCG
TTGGCGATTGACGGCATCGTGCACACGGCCGGTTGCCTCGGACGATCTTT
GATTTAGAGGGCTGCTTCATGAGTCGCGTGTGGTTTGGTCTTGAAACGGG
TTCCCTGAGCGTGCGTGCCGTAGCATCGTTGGTGCACCTACACGCGACCG
GCACCTACACGCGACCGGCCTGGCATTTGGGAGGCGTGTTGGTCCCCGCC
GGCCGGGGAATCGGCTGCAAGAAGGCGCCGGACACGGTCATCAGGTTGTG
GCTGTGCTTTCGGATATTTGATGTTTTCTTTTGCACGCAGAATATGGTGG
CTGCGCGGATCATTCAAAGCTTGATGTATCCATTTCCAACGCGGTCGCGA
CCAATCGTGCGAGGAGAAATCGGTAGGAATGACTGGGTTAGGAGGTGCGT
GTGGTTCCAGCGCGTGAGTACAGTCAGTCGGTGAACGACTAGAGGGGAAT
CAGTGCGACTGTCGTGGATAATGGAGGCGAACTCCGATTTCCCTGCACTT
CGCTGCACCCTTGTCATGATAAAAGCTCGGGGTGGAGGGGGGAGGGTCAT
ACCTTTCCGCCGTCGCTCTCAAGGTGTTTCGAACACTACTTTTATTTTTG
CATACGGTACTGCCGAGTACCCCAAAGATAGGACGGGGGGGGGTGAGAAA
ATCGGCTCTTGTCTGTCGAGTTAGAAGGCGTTTTTCCATTTTGCCGTGCT
TGCACCTGATTGGCCAGCCCTTCTGAGATGATCCCGTTCCGAGTCTACCA
GGTTCAACCAATACGTTCCGGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig1189:6850..12821+

>mRNA_S-dermatodea_contig1189.1188.1 ID=mRNA_S-dermatodea_contig1189.1188.1|Name=mRNA_S-dermatodea_contig1189.1188.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2712bp|location=Sequence derived from alignment at S-dermatodea_contig1189:6850..12821+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGCATTTTCTGCGCCAACTGTGGCGGTGGTATCGGTGTCAAGATGAG
CATTTTCTGCGCCAACTGTGGCGGTGGTATCGGTGTCAAGCGCGGTCTGC
GCGCGTGCGTGATGATGGCAGCCCTGGCCTCCCCCTCCAAGGCCTTCCTC
CCGACGCTCCCGACCCTGCTGCGCCAATCCCGCAACGCCCTCCGAACATC
CGCGCTTCAAAATCCCGCATCTTCGGCACGACCAAGGCGAGCGCTCACCT
CCTTGTCCGCAGCGGACAACAACAGCAGCAACAGTGCCAGAGATGCAGCG
ATGGCGGCCGTGCGAGCTGCCGAGGACGAGCTGGGTCGGCAAGTGGACGA
CTTGGGCGACGCCGCGGCGGGAGCGGACGATGTGCGAGAGGCAGTCGCCG
CCGCTCGCGCGGCCGCTCGCGGCGCCATGGACTCGCTACGGAGAGGCGGT
GCTGGGTTTCCCGGCGGGGCAGCGGCGGCCGAGGGTCCGCGGGATCGCGG
TCTGCGCGCGTGCGTGATGATGGCAGCCCTGGCCTCCCCCTCCAAGGCCT
TCCTCCCGACGCTCCCGACCCTGCTGCGCCAATCCCGCAACGCCCTCCGA
ACATCCGCGCTTCAAAATCCCGCATCTTCGGCACGACCAAGGCGAGCGCT
CACCTCCTTGTCCGCAGCGGACAACAACAGCAGCAACAGTGCCAGAGATG
CAGCGATGGCGGCCGTGCGAGCTGCCGAGGACGAGCTGGGTCGGCAAGTG
GACGACTTGGGCGACGCCGCGGCGGGAGCGGACGATGTGCGAGAGGCAGT
CGCCGCCGCTCGCGCGGCCGCTCGCGGCGCCATGGACTCGCTACGGAGAG
GCGGTGCTGGGTTTCCCGGCGGGGCAGCGGCGGCCGAGGGTCCGCGGGAT
GACGTGACCTCGCCCGCCCGCGCCGCGGTGGAAGCAGCACTTTCGGCGGT
GGCAGGAGCCGAAACCACCCCGCCAACTGAATCATTTTCCGCCGCTCGCG
ACGCGATCGATATGGCGCAGGCCGCCCTCGGCCGCCGAGATTCGGCGGCG
GCGGAACTAAAACAAGGCGTTGCTGCCACCGGACGTGACCTCGCCCGCCC
GCGCCGCGGTGGAAGCAGCACTTTCGGCGGTGGCAGGAGCCGAAACCACC
CCGCCAACTGAATCATTTTCCGCCGCTCGCGACGCGATCGATATGGCGCA
GGCCGCCCTCGGCCGCCGAGATTCGGCGGCGGCGGAACTAAAACAAGGCG
TTGCTGCCACCGGCATGGCGTCGGCAGCGGGGGCGGGGGTTGGCGTTGAC
AATGGCGATGGTGGTGGTAGTGGTGGTGGTTTGTCTGAAGAAGGAGAGGG
CGGGGGACAGGAGGAGGAGCCCACGAGGGAGCCCGACTCGGCGCGCACGA
CTCGGAACAACCCCGCCGCGTCCCACAGCCATCTGTCCCATCTGCTTTGG
CATGGCGTCGGCAGCGGGGGCGGGGGTTGGCGTTGACAATGGCGATGGTG
GTGGTAGTGGTGGTGGTTTGTCTGAAGAAGGAGAGGGCGGGGGACAGGAG
GAGGAGCCCACGAGGGAGCCCGACTCGGCGCGCACGACTCGGAACAACCC
CGCCGCGTCCCACAGCCATCTGTCCCATCTGCTTTGGAGACAAGTCGCGG
GCCCGGGAGACACGGTGGTGGACTGCACGGCGGGGAATGGCTATGACACC
CTCGAGCTCGCGAAGATCGTGGCGCTGAACGACGGCCAGGGGAAGATTTA
CGCCATGGACGTTCAGGAGACAAGTCGCGGGCCCGGGAGACACGGTGGTG
GACTGCACGGCGGGGAATGGCTATGACACCCTCGAGCTCGCGAAGATCGT
GGCGCTGAACGACGGCCAGGGGAAGATTTACGCCATGGACGTTCAGGATC
GAGCTCTGGATGCCACACGCGCGAGGCTGGATGCGGAGCTGGGCCAAACC
GCCGTGAAGCGTGTCAAGCTCACCAAGGGGAACTTCCGGCAGCTGCCTGC
GGAGCTGGGGCCCATGTCCGTGCAGCTGATGGTGATCGAGCTCTGGATGC
CACACGCGCGAGGCTGGATGCGGAGCTGGGCCAAACCGCCGTGAAGCGTG
TCAAGCTCACCAAGGGGAACTTCCGGCAGCTGCCTGCGGAGCTGGGGCCC
ATGTCCGTGCAGCTGATGGTTTATAACCTGGGGTGGCTGCCGGGGGGCGA
TAAGTCGATAACGACGGAGCTGGAGGATACGTTGGAGAGCATTGAGGCCG
CGAAACGTCTGATGAAGAGCGGCGGCATGATAAGCGTCATGCTGTACAGG
GGCCACGCCGAGTTATAACCTGGGGTGGCTGCCGGGGGGCGATAAGTCGA
TAACGACGGAGCTGGAGGATACGTTGGAGAGCATTGAGGCCGCGAAACGT
CTGATGAAGAGCGGCGGCATGATAAGCGTCATGCTGTACAGGGGCCACGC
CGAGGGCGAACGGGAGACAGAAGCCGTGCTTGAGTACGCAAGAGGACTTA
CCCACTACCACTGGCGCGTGTATGTCCACGAGAGAGTCAACCGACCAGGA
TCCCCGGTACTTCTCACGATATACAGGCTCTGAGGCGAACGGGAGACAGA
AGCCGTGCTTGAGTACGCAAGAGGACTTACCCACTACCACTGGCGCGTGT
ATGTCCACGAGAGAGTCAACCGACCAGGATCCCCGGTACTTCTCACGATA
TACAGGCTCTGA
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