mRNA_S-dermatodea_contig11889.1187.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11889.1187.1
Unique NamemRNA_S-dermatodea_contig11889.1187.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11889.1187.1 vs. uniprot
Match: D8LEV5_ECTSI (Phosphoglycerate kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEV5_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 7.290e-54
Identity = 97/102 (95.10%), Postives = 101/102 (99.02%), Query Frame = 1 
Query:    1 GAVAEPKRPFAAVVGGSKVSSKIGVIDSMLNKVDRLVIGGGMVFTFLKARGLSVGSSLVEDDKLDLAKELEKTAAAKGVEIILPTDVVVADAFSADANTQVS 306
            GAVAEPKRPFAAVVGGSKVSSKIGVIDSMLNKVD LVIGGGMVFTFLKARGLSVGSSLVEDDKLDLA+ELEKTAA+KGVEIILPTDVV+ADAFSADANTQV+
Sbjct:  270 GAVAEPKRPFAAVVGGSKVSSKIGVIDSMLNKVDMLVIGGGMVFTFLKARGLSVGSSLVEDDKLDLARELEKTAASKGVEIILPTDVVLADAFSADANTQVA 371
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BLAST of mRNA_S-dermatodea_contig11889.1187.1 vs. uniprot
Match: A0A7R9UCB1_9STRA (Phosphoglycerate kinase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCB1_9STRA)

HSP 1 Score: 169 bits (429), Expect = 9.900e-49
Identity = 87/101 (86.14%), Postives = 96/101 (95.05%), Query Frame = 1 
Query:    1 GAVAEPKRPFAAVVGGSKVSSKIGVIDSMLNKVDRLVIGGGMVFTFLKARGLSVGSSLVEDDKLDLAKELEKTAAAKGVEIILPTDVVVADAFSADANTQV 303
            GAVAEPKRPFAA+VGGSKVSSKIGVI+SML KVD+L+IGGGMVFTFLKARG  VGSSLVEDDKLDLAKELE+ AAAKGVE+ILP+DV+ ADAF+ADANTQV
Sbjct:  247 GAVAEPKRPFAAIVGGSKVSSKIGVIESMLEKVDKLIIGGGMVFTFLKARGEKVGSSLVEDDKLDLAKELEEKAAAKGVELILPSDVIAADAFAADANTQV 347
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BLAST of mRNA_S-dermatodea_contig11889.1187.1 vs. uniprot
Match: A0A7S2ZPQ5_9RHOD (Phosphoglycerate kinase n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZPQ5_9RHOD)

HSP 1 Score: 163 bits (413), Expect = 6.210e-47
Identity = 85/101 (84.16%), Postives = 93/101 (92.08%), Query Frame = 1 
Query:    1 GAVAEPKRPFAAVVGGSKVSSKIGVIDSMLNKVDRLVIGGGMVFTFLKARGLSVGSSLVEDDKLDLAKELEKTAAAKGVEIILPTDVVVADAFSADANTQV 303
            G VA P RPFAA+VGGSKVSSKIGVI+S+L KVD+L+IGGGMVFTFLKARGL+VGSSLVE+DKLDLAKELE  AA KGVE ILPTDVVVADAFSADANT+V
Sbjct:  216 GTVANPGRPFAAIVGGSKVSSKIGVIESLLGKVDKLIIGGGMVFTFLKARGLNVGSSLVEEDKLDLAKELEAKAAEKGVEFILPTDVVVADAFSADANTKV 316
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BLAST of mRNA_S-dermatodea_contig11889.1187.1 vs. uniprot
Match: A0A7S2ZNW2_9RHOD (Phosphoglycerate kinase n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZNW2_9RHOD)

HSP 1 Score: 163 bits (413), Expect = 1.250e-46
Identity = 85/101 (84.16%), Postives = 93/101 (92.08%), Query Frame = 1 
Query:    1 GAVAEPKRPFAAVVGGSKVSSKIGVIDSMLNKVDRLVIGGGMVFTFLKARGLSVGSSLVEDDKLDLAKELEKTAAAKGVEIILPTDVVVADAFSADANTQV 303
            G VA P RPFAA+VGGSKVSSKIGVI+S+L KVD+L+IGGGMVFTFLKARGL+VGSSLVE+DKLDLAKELE  AA KGVE ILPTDVVVADAFSADANT+V
Sbjct:  216 GTVANPGRPFAAIVGGSKVSSKIGVIESLLGKVDKLIIGGGMVFTFLKARGLNVGSSLVEEDKLDLAKELEAKAAEKGVEFILPTDVVVADAFSADANTKV 316
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BLAST of mRNA_S-dermatodea_contig11889.1187.1 vs. uniprot
Match: Q8GVE7_CHOCR (Phosphoglycerate kinase n=2 Tax=Chondrus crispus TaxID=2769 RepID=Q8GVE7_CHOCR)

HSP 1 Score: 162 bits (409), Expect = 7.720e-46
Identity = 82/102 (80.39%), Postives = 95/102 (93.14%), Query Frame = 1 
Query:    1 GAVAEPKRPFAAVVGGSKVSSKIGVIDSMLNKVDRLVIGGGMVFTFLKARGLSVGSSLVEDDKLDLAKELEKTAAAKGVEIILPTDVVVADAFSADANTQVS 306
            G V++P RPFAA+VGGSKVSSKIGVIDS+L KVD+L+IGGGMVFTFLKA+GL+VGSSLVEDDKL+LA+EL KTA AKGV IILPTDVV+AD F+ADANTQV+
Sbjct:  240 GTVSDPARPFAAIVGGSKVSSKIGVIDSLLQKVDKLIIGGGMVFTFLKAKGLNVGSSLVEDDKLELARELVKTAEAKGVSIILPTDVVLADKFAADANTQVT 341
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BLAST of mRNA_S-dermatodea_contig11889.1187.1 vs. uniprot
Match: A0A5J4ZAT6_PORPP (Phosphoglycerate kinase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4ZAT6_PORPP)

HSP 1 Score: 161 bits (408), Expect = 8.660e-46
Identity = 81/102 (79.41%), Postives = 96/102 (94.12%), Query Frame = 1 
Query:    1 GAVAEPKRPFAAVVGGSKVSSKIGVIDSMLNKVDRLVIGGGMVFTFLKARGLSVGSSLVEDDKLDLAKELEKTAAAKGVEIILPTDVVVADAFSADANTQVS 306
            GAV+EPKRPFAA+VGGSKVSSKIGVI+S++ KVD++VIGGGMVFTFLKARGL+VGSSLVE+DKLDLAKELE  A AKG++ ILPTDVV+AD F+ADANT+V+
Sbjct:  228 GAVSEPKRPFAAIVGGSKVSSKIGVIESLMEKVDKIVIGGGMVFTFLKARGLNVGSSLVEEDKLDLAKELEAKAKAKGIKFILPTDVVLADKFAADANTKVT 329
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BLAST of mRNA_S-dermatodea_contig11889.1187.1 vs. uniprot
Match: A0A7S3UFA8_9CHLO (Phosphoglycerate kinase (Fragment) n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UFA8_9CHLO)

HSP 1 Score: 154 bits (388), Expect = 1.260e-45
Identity = 78/100 (78.00%), Postives = 88/100 (88.00%), Query Frame = 1 
Query:    4 AVAEPKRPFAAVVGGSKVSSKIGVIDSMLNKVDRLVIGGGMVFTFLKARGLSVGSSLVEDDKLDLAKELEKTAAAKGVEIILPTDVVVADAFSADANTQV 303
            AVAEP RPFAA+VGGSKVSSKIGVI+S+LNK D+L +GGGM+FTF KA+GL  GSSLVEDDK+DLAKEL   A  KGVEI+LPTDVVVADAF A+ANTQV
Sbjct:    1 AVAEPTRPFAAIVGGSKVSSKIGVIESLLNKCDKLFLGGGMIFTFYKAKGLDTGSSLVEDDKIDLAKELMAKAEEKGVEIVLPTDVVVADAFDAEANTQV 100
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BLAST of mRNA_S-dermatodea_contig11889.1187.1 vs. uniprot
Match: L1IFN4_GUITC (Phosphoglycerate kinase n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IFN4_GUITC)

HSP 1 Score: 159 bits (403), Expect = 2.110e-45
Identity = 82/102 (80.39%), Postives = 94/102 (92.16%), Query Frame = 1 
Query:    1 GAVAEPKRPFAAVVGGSKVSSKIGVIDSMLNKVDRLVIGGGMVFTFLKARGLSVGSSLVEDDKLDLAKELEKTAAAKGVEIILPTDVVVADAFSADANTQVS 306
            GAVA PKRPFAA+VGGSKVSSKIGVI+S+L K D+LVIGGGMVFTFLKARGL+VGSSLVE+DKL+LAK LEK AA KGV+ ILPTDVV+AD F+ADANT+V+
Sbjct:  187 GAVANPKRPFAAIVGGSKVSSKIGVIESLLGKCDKLVIGGGMVFTFLKARGLNVGSSLVEEDKLELAKSLEKKAAEKGVKFILPTDVVLADKFAADANTKVA 288
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BLAST of mRNA_S-dermatodea_contig11889.1187.1 vs. uniprot
Match: A0A7S2TK24_9EUKA (Phosphoglycerate kinase n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TK24_9EUKA)

HSP 1 Score: 159 bits (403), Expect = 4.150e-45
Identity = 80/102 (78.43%), Postives = 95/102 (93.14%), Query Frame = 1 
Query:    1 GAVAEPKRPFAAVVGGSKVSSKIGVIDSMLNKVDRLVIGGGMVFTFLKARGLSVGSSLVEDDKLDLAKELEKTAAAKGVEIILPTDVVVADAFSADANTQVS 306
            GAVAEP RPFAA+VGGSKVSSKIGVI+S+L KVD+L+IGGGMVFTFLKARGL VGSSLVE+DKL+LAK+LE+ A  KGVE+ILP+DV++AD F+ADANTQV+
Sbjct:  216 GAVAEPARPFAAIVGGSKVSSKIGVIESLLEKVDKLIIGGGMVFTFLKARGLEVGSSLVEEDKLELAKDLERIAKEKGVELILPSDVILADNFAADANTQVA 317
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BLAST of mRNA_S-dermatodea_contig11889.1187.1 vs. uniprot
Match: A0A835Z2Y0_9STRA (Phosphoglycerate kinase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2Y0_9STRA)

HSP 1 Score: 159 bits (401), Expect = 5.770e-45
Identity = 84/101 (83.17%), Postives = 93/101 (92.08%), Query Frame = 1 
Query:    1 GAVAEPKRPFAAVVGGSKVSSKIGVIDSMLNKVDRLVIGGGMVFTFLKARGLSVGSSLVEDDKLDLAKELEKTAAAKGVEIILPTDVVVADAFSADANTQV 303
            GA+AEPKRPFAA+VGGSKVSSKIGVI++ML+KVD+LVIGGGMVFTFLKARGLSVGSSLVEDD+LDLA +LE  A  KGVEIILP DVVVAD F+ADA TQV
Sbjct:  203 GAIAEPKRPFAAIVGGSKVSSKIGVIEAMLDKVDKLVIGGGMVFTFLKARGLSVGSSLVEDDQLDLACKLEGIAKEKGVEIILPKDVVVADKFAADAATQV 303
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11889.1187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEV5_ECTSI7.290e-5495.10Phosphoglycerate kinase n=1 Tax=Ectocarpus silicul... [more]
A0A7R9UCB1_9STRA9.900e-4986.14Phosphoglycerate kinase n=1 Tax=Pinguiococcus pyre... [more]
A0A7S2ZPQ5_9RHOD6.210e-4784.16Phosphoglycerate kinase n=1 Tax=Rhodosorus marinus... [more]
A0A7S2ZNW2_9RHOD1.250e-4684.16Phosphoglycerate kinase n=2 Tax=Rhodosorus marinus... [more]
Q8GVE7_CHOCR7.720e-4680.39Phosphoglycerate kinase n=2 Tax=Chondrus crispus T... [more]
A0A5J4ZAT6_PORPP8.660e-4679.41Phosphoglycerate kinase n=1 Tax=Porphyridium purpu... [more]
A0A7S3UFA8_9CHLO1.260e-4578.00Phosphoglycerate kinase (Fragment) n=1 Tax=Picocys... [more]
L1IFN4_GUITC2.110e-4580.39Phosphoglycerate kinase n=2 Tax=Guillardia theta T... [more]
A0A7S2TK24_9EUKA4.150e-4578.43Phosphoglycerate kinase n=1 Tax=Lotharella oceanic... [more]
A0A835Z2Y0_9STRA5.770e-4583.17Phosphoglycerate kinase (Fragment) n=1 Tax=Tribone... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11889contigS-dermatodea_contig11889:4604..6487 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score183.7
Seed ortholog evalue4.2e-44
Seed eggNOG ortholog2880.D8LEV5
KEGG rclassRC00002,RC00043
KEGG koko:K00927
KEGG ReactionR01512
KEGG Pathwayko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00001,M00002,M00003,M00165,M00166,M00308,M00552
EggNOG free text desc.phosphoglycerate kinase activity
EggNOG OGsCOG0126@1,KOG1367@2759
EC2.7.2.3
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPhosphoglycerate kinase
Ec32 orthologEc-21_005710.1
Exons3
Model size306
Cds size306
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11889.1187.1prot_S-dermatodea_contig11889.1187.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11889 4604..6487 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924221.8303204-CDS-S-dermatodea_contig11889:4603..47111622924221.8303204-CDS-S-dermatodea_contig11889:4603..4711Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11889 4604..4711 -
1694079103.6182163-CDS-S-dermatodea_contig11889:4603..47111694079103.6182163-CDS-S-dermatodea_contig11889:4603..4711Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11889 4604..4711 -
1622924221.840189-CDS-S-dermatodea_contig11889:5777..58791622924221.840189-CDS-S-dermatodea_contig11889:5777..5879Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11889 5778..5879 -
1694079103.633639-CDS-S-dermatodea_contig11889:5777..58791694079103.633639-CDS-S-dermatodea_contig11889:5777..5879Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11889 5778..5879 -
1622924221.853119-CDS-S-dermatodea_contig11889:6391..64871622924221.853119-CDS-S-dermatodea_contig11889:6391..6487Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11889 6392..6487 -
1694079103.6439345-CDS-S-dermatodea_contig11889:6391..64871694079103.6439345-CDS-S-dermatodea_contig11889:6391..6487Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11889 6392..6487 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11889.1187.1

>prot_S-dermatodea_contig11889.1187.1 ID=prot_S-dermatodea_contig11889.1187.1|Name=mRNA_S-dermatodea_contig11889.1187.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=102bp
GAVAEPKRPFAAVVGGSKVSSKIGVIDSMLNKVDRLVIGGGMVFTFLKAR
GLSVGSSLVEDDKLDLAKELEKTAAAKGVEIILPTDVVVADAFSADANTQ
VS
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mRNA from alignment at S-dermatodea_contig11889:4604..6487-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11889.1187.1 ID=mRNA_S-dermatodea_contig11889.1187.1|Name=mRNA_S-dermatodea_contig11889.1187.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1884bp|location=Sequence derived from alignment at S-dermatodea_contig11889:4604..6487- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGTGCGGTGGCCGAACCCAAGAGGCCCTTCGCCGCCGTCGTGGGTGGATC
CAAGGTGTCCTCCAAGATCGGAGTTATTGACTCCATGCTTAACAAGGTAG
GTTTGTATGATTGATCGGTCGATCGATCGATCGCTTTCTTGATGGATCGC
TTGGTTGATGATGGCGCATGATTGGTTTATTGCTTTTGGTTGATGATTGA
TTATGGCACTAAGTTACAACCGACCGGGCCGCCCCGCCCGCCAAAAGCTG
CCGATCCCGCTCGCAACTAACCAATCAATGAATTTATAACCGAACCAACC
AATCGGAGTTCCAATCGGTAACCGACCAGCCCGCCAATAGCTGCCGATCC
CGCTCGCAACTAACCAATCAATGAATTTATCACCGAACCAACCAATCGGA
GTTCCAATCGGTAACCGACCAGCCCGCCAATAGCTGCCGATCCCGCTCAC
CACCAACCAATCAATGAATTTATAACCGAACCAACCAATCGGGGTTCCAA
TCGGTAACCGACCAGCCCGCCAGTAGCTACCGATCCCGCTCGCAACTAAC
CAATCAATGGATCTATAACCGAACCAACCAATCGGACGTCCGATCGGTAA
CCGACCAGGTGGACCGTCTGGTGATCGGGGGAGGCATGGTCTTCACCTTC
CTCAAGGCTCGCGGTCTCAGCGTCGGCTCTTCCCTCGTCGAGGATGACAA
GCTTGATCTGGTATGTATGCGCATGCACACATGAATGAGCTTAGAAAGGG
CAAGCACATCAACTCGCGCTCCGACAAAAAATGCAGACTCGGAATCCATG
CCACCGTTGTAGATATATATACAAGGTGGCGGATGGTGCATTTTTTTGTT
TAAAGCTCGGTTCCAATACTGTATTTGGTTCGTTTAATCCACAAGTGAAA
AATTCCAAAGATTGTTTAGGCGTCCGTTGATTCGATATGATTGATACAAG
TATACACACCCTTTGTGAACTAAACGGTGCTCGGTTGATTTGATTGATTG
TAACACTTCTAAACGGATCCGTCGCGGCCACATGGTTGCCGATCCCGCTC
GTGGTGATATGATAATTCGATAAGTCGAAAACAGTACTTGTACATATTAA
TAGTGTAACAACATGCACGACGTGCATTGTTTTTCAAGTTTTCCTGTGTA
GAAGACGCGAATCACGGCCTGAAGAGATTGCAGGTGTTACTGTAGTAAGA
GCTATTATTATGTATATTATATAGCTTTTTGGACTGGTCGGTTTAGAAGT
GAGGAAGAAGTATCGCAGATTGATATTTATTTGCACGCATATTACGGAGG
TACGCTATAATCAAGTGATCAGGACCAAATATCATGACCATGAATACCCA
ACTATTCCTACCACGAGTACCACCCCCAAACAAAATAACGTAATGAAAAA
CAAAAAAAAACACGAGATACGACCATGCACAAGAACACCCACCACCTCGA
AATCTGGATAATATCAGCCTTTTATTTTTTGTTTTTCTAGGTTGAGACTT
GTGGCAAATTTGGACCTGTTTACGTTAACTATGGTCCCCCGTTAAAGTAC
TAATTGGCCCTCTCTCTCCCCCTATAGCTACTGTACACAGGCGAAACAGG
AGAGAGGACACCAATAATTGATTGTGGAGGCCACGGTTTGTGTTGTGTAT
GTGTGTCACGTGTCATAATTCATGGCACCACTTTATGACGAACACAACCG
CTCCTGTTCTCGACCGCGCGCGGTGACCCGCCGCATCTACCCCTTCCGCG
ACGGTTTGGTTTTCCGGCGGCAACAGGCGAAGGAGCTCGAAAAGACCGCC
GCTGCCAAGGGCGTGGAGATCATCCTTCCGACAGACGTAGTCGTTGCCGA
TGCTTTTTCCGCCGATGCCAACACACAGGTAAGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig11889:4604..6487-

>mRNA_S-dermatodea_contig11889.1187.1 ID=mRNA_S-dermatodea_contig11889.1187.1|Name=mRNA_S-dermatodea_contig11889.1187.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at S-dermatodea_contig11889:4604..6487- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGTGCGGTGGCCGAACCCAAGAGGCCCTTCGCCGCCGTCGTGGGTGGATC
CAAGGTGTCCTCCAAGATCGGAGTTATTGACTCCATGCTTAACAAGGGTG
CGGTGGCCGAACCCAAGAGGCCCTTCGCCGCCGTCGTGGGTGGATCCAAG
GTGTCCTCCAAGATCGGAGTTATTGACTCCATGCTTAACAAGGTGGACCG
TCTGGTGATCGGGGGAGGCATGGTCTTCACCTTCCTCAAGGCTCGCGGTC
TCAGCGTCGGCTCTTCCCTCGTCGAGGATGACAAGCTTGATCTGGTGGAC
CGTCTGGTGATCGGGGGAGGCATGGTCTTCACCTTCCTCAAGGCTCGCGG
TCTCAGCGTCGGCTCTTCCCTCGTCGAGGATGACAAGCTTGATCTGGCGA
AGGAGCTCGAAAAGACCGCCGCTGCCAAGGGCGTGGAGATCATCCTTCCG
ACAGACGTAGTCGTTGCCGATGCTTTTTCCGCCGATGCCAACACACAGGT
AAGCGCGAAGGAGCTCGAAAAGACCGCCGCTGCCAAGGGCGTGGAGATCA
TCCTTCCGACAGACGTAGTCGTTGCCGATGCTTTTTCCGCCGATGCCAAC
ACACAGGTAAGC
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