mRNA_S-dermatodea_contig11881.1182.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11881.1182.1
Unique NamemRNA_S-dermatodea_contig11881.1182.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig11881.1182.1 vs. uniprot
Match: D8LEB6_ECTSI (IRK_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEB6_ECTSI)

HSP 1 Score: 302 bits (774), Expect = 3.650e-95
Identity = 182/325 (56.00%), Postives = 214/325 (65.85%), Query Frame = 1 
Query:    1 QSPEASSLGSARDNQGYRRDSQYNQYWEETAFSEVGANGSERGGVERVADSVGYVHRFPDLLKRWDDVDGDRGTWYEVMKRRMLRVEMERRREE-----KRKARKVETDYLSAASMARLSRAGFGRL-ERRASIMHIGDG-VTEPTIPYSAENRADSMKKIRDMGLGKVSESSELPVPNPEAGMERLPSLTDTAPGSPPLGSSGSGFSVASXXXXXXXXXXXGTPCATLTPTQWFAREERRAIDAYLQDRELEVVVILEGTDTSTGSTVQARHSYCWEDILWDRTFASCVSRGTDGACEVDFAKFHDTLKVPDDCAEHGFIQSFA 954
            Q+ E   LGS   NQG RR S    YWE+ + SE G N + RG  +   D++GYVHRFPDLLKRWDDVDGDRGTWYE MKRR+LRVEMERRR E     + +  K   D  +A+S +RL+ AGF R  ER ASIM +G G V E      A +R+          LG++SE  + P    + G+E       T  GSPP+  SGSG + A            G   A L   QWFAREER+AIDAY+QDRELEVVVILEGTDTSTGSTVQARHSYCWEDILWDRTFA CV+RG DGACEVDF+KFHDTL+ P +C +HGFIQS+A
Sbjct:   16 QNLEQEELGSRLGNQGGRRQSAV--YWEDASASEFGVNVNGRG-TDDDTDNLGYVHRFPDLLKRWDDVDGDRGTWYEKMKRRLLRVEMERRRSEDMRRERERTGKTADDIRAASSRSRLAHAGFRRPPERMASIMRVGGGGVGEDCADDFAADRSKEAP-----ALGRLSEGRQAP----QGGLE-------TPIGSPPV-LSGSGDAPAGN----------GGGRARLNAGQWFAREERKAIDAYIQDRELEVVVILEGTDTSTGSTVQARHSYCWEDILWDRTFACCVTRGEDGACEVDFSKFHDTLRAPANCDDHGFIQSYA 310
[Close]
BLAST of mRNA_S-dermatodea_contig11881.1182.1 vs. uniprot
Match: A0A6H5K8M2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8M2_9PHAE)

HSP 1 Score: 305 bits (781), Expect = 1.080e-90
Identity = 184/325 (56.62%), Postives = 214/325 (65.85%), Query Frame = 1 
Query:    1 QSPEASSLGSARDNQGYRRDSQYNQYWEETAFSEVGANGSERGGVERVADSVGYVHRFPDLLKRWDDVDGDRGTWYEVMKRRMLRVEMERRREE-----KRKARKVETDYLSAASMARLSRAGFGR-LERRASIMHIGDG-VTEPTIPYSAENRADSMKKIRDMGLGKVSESSELPVPNPEAGMERLPSLTDTAPGSPPLGSSGSGFSVASXXXXXXXXXXXGTPCATLTPTQWFAREERRAIDAYLQDRELEVVVILEGTDTSTGSTVQARHSYCWEDILWDRTFASCVSRGTDGACEVDFAKFHDTLKVPDDCAEHGFIQSFA 954
            Q+ E   LGS   NQG RR S    YWE+ + SE G N S RG  +   D +GYVHRFPDLLKRWDDVDGDRGTWYE MKRR+LRVEMERRR E     + +  K   D  +A+S +RL+ AGF R LER ASIMH+G G V E      A +R+          LG++SE  + P    + G+E       T  GS P+  SGSG + A            G   A L   QWFAREER+AIDAY+QDRELEVVVILEGTDTSTGSTVQARHSYCWEDILWDRTFA CV+RG DGACEVDF+KFHDTL+ P +C +HGFIQS+A
Sbjct:  480 QNLEQEELGSRLGNQGGRRQSAV--YWEDASASEFGFNVSGRG-TDDDTDKLGYVHRFPDLLKRWDDVDGDRGTWYEKMKRRVLRVEMERRRSEDMRRERERTGKTADDIRAASSRSRLAHAGFRRPLERMASIMHVGGGGVGEDCADEFAADRSKEAP-----ALGRLSEGRQAP----QGGLE-------TPIGSSPV-VSGSGDAPAGN----------GGGRARLNAGQWFAREERKAIDAYIQDRELEVVVILEGTDTSTGSTVQARHSYCWEDILWDRTFACCVTRGEDGACEVDFSKFHDTLRAPANCDDHGFIQSYA 774
[Close]
BLAST of mRNA_S-dermatodea_contig11881.1182.1 vs. uniprot
Match: A0A835ZBX5_9STRA (IRK_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBX5_9STRA)

HSP 1 Score: 125 bits (314), Expect = 7.860e-31
Identity = 55/92 (59.78%), Postives = 70/92 (76.09%), Query Frame = 1 
Query:  679 WFAREERRAIDAYLQDRELEVVVILEGTDTSTGSTVQARHSYCWEDILWDRTFASCVSRGTDGACEVDFAKFHDTLKVPDDCAEHGFIQSFA 954
            WFA+EERRAI A+++DRELEVVVI+EG DTSTGSTVQ R+SY  ++++WD     CV++  DG C VDF KFHD    P DC + GF+QS+A
Sbjct:    6 WFAQEERRAIAAFVKDRELEVVVIVEGIDTSTGSTVQCRYSYAVDNMVWDHAIGPCVTKDADGKCVVDFLKFHDVRAAPPDCIDSGFVQSYA 97
[Close]
BLAST of mRNA_S-dermatodea_contig11881.1182.1 vs. uniprot
Match: A0A7S3HDT6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HDT6_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.790e-16
Identity = 39/87 (44.83%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:  691 EERRAIDAYLQDRELEVVVILEGTDTSTGSTVQARHSYCWEDILWDRTFASCVSRG-TDGACEVDFAKFHDTLKVPDDCAEHGFIQS 948
            EE+  +  YL+DR++E++VI+EG D +TG  VQARHSY   +I+WD++F  CV +   DG   +DF+KFH    VP D    G + S
Sbjct:  143 EEQSMVQRYLRDRQVEIIVIVEGVDAATGGMVQARHSYTSSEIMWDKSFECCVEKDPVDGCTTIDFSKFHQLCDVPSDAPFAGVVHS 229
[Close]
BLAST of mRNA_S-dermatodea_contig11881.1182.1 vs. uniprot
Match: A0A7S1UC37_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UC37_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 2.850e-16
Identity = 42/87 (48.28%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:  694 ERRAIDAYLQDRELEVVVILEGTDTSTGSTVQARHSYCWEDILWDRTFASCVSRGTDGACEVDFAKFHDTLKVPDDCAEHGFIQSFA 954
            E+ A+  +L+DRELE+VV++EG D  T  T+QARHSY W++I +D+TFA CV R  +G C VDF  FH  +  P      G I S A
Sbjct:  138 EKEALREFLEDRELEIVVLVEGIDALTSCTLQARHSYRWDEIEFDKTFAECVFRSAEGNCVVDFTDFHRLVDCPPCNDSFGPIPSHA 224
[Close]
BLAST of mRNA_S-dermatodea_contig11881.1182.1 vs. uniprot
Match: A0A6G0WDP0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WDP0_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 9.610e-14
Identity = 47/84 (55.95%), Postives = 55/84 (65.48%), Query Frame = 1 
Query:  706 IDAYLQDRELEVVVILEGTDTSTGSTVQARHSYCWEDILWDRTFASCVSRG--TDGACEVDFAKFHDTLKVPDDCAEHGFIQSF 951
            I+ +L   ELEVVVILEGTD++TG+T+QAR SY   DI W  TFA CVSR   T+GA  VDF KFHD    P DCA    +  F
Sbjct:  329 IEKHLAQSELEVVVILEGTDSTTGNTMQARFSYTSHDIKWHHTFARCVSRHPTTNGAL-VDFDKFHDLSPAPLDCARPVSVSVF 411
[Close]
BLAST of mRNA_S-dermatodea_contig11881.1182.1 vs. uniprot
Match: A0A485LG44_9STRA (Aste57867_20860 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LG44_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 9.750e-14
Identity = 45/84 (53.57%), Postives = 56/84 (66.67%), Query Frame = 1 
Query:  706 IDAYLQDRELEVVVILEGTDTSTGSTVQARHSYCWEDILWDRTFASCVSRG--TDGACEVDFAKFHDTLKVPDDCAEHGFIQSF 951
            I+ +L+  ELEV+VILEGTD++TG+T+QAR SY   DI W+ TFA CVSR   T GA  +DF KFHD    P DCA    +  F
Sbjct:  331 IERHLKQSELEVLVILEGTDSTTGNTMQARFSYATYDIKWNHTFARCVSRHPETKGAL-IDFDKFHDVRPAPLDCARDVSVSVF 413
[Close]
BLAST of mRNA_S-dermatodea_contig11881.1182.1 vs. uniprot
Match: A0A1Z5KHZ1_FISSO (Potassium inwardly-rectifying channel subfamily J member 8 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KHZ1_FISSO)

HSP 1 Score: 79.7 bits (195), Expect = 2.660e-12
Identity = 38/75 (50.67%), Postives = 50/75 (66.67%), Query Frame = 1 
Query:  703 AIDAYLQDRELEVVVILEGTDTSTGSTVQARHSYCWEDILWDRTFASCVSRGTD--GACEVDFAKFHDTLKVPDD 921
            ++  Y QDR+LEV+V+LEG D  TGS  Q +HSY  E+I+WD  F  CV   T+  G C VDFA+FH+T  V +D
Sbjct:  310 SLQEYWQDRQLEVIVLLEGIDALTGSMSQTQHSYTLENIVWDAQFVPCVRPDTNNNGGCVVDFAQFHETQPVNED 384
[Close]
BLAST of mRNA_S-dermatodea_contig11881.1182.1 vs. uniprot
Match: A9UNU4_MONBE (Uncharacterized protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UNU4_MONBE)

HSP 1 Score: 80.1 bits (196), Expect = 3.280e-12
Identity = 38/83 (45.78%), Postives = 56/83 (67.47%), Query Frame = 1 
Query:  685 AREERRAIDAYLQDRELEVVVILEGTDTSTGSTVQARHSYCWEDILWDRTFASCVSRGTDGACEVDFAKFHDTLKV-PDDCAE 930
            AR+E   I ++L    +E++ I+EG D  T +TVQARHSY + DI++D  FA CV++G+DGAC++D   FHD +   PD+  E
Sbjct:  398 ARKEM--IRSHLMKNNVEIIAIIEGVDPHTAATVQARHSYTYRDIVFDHAFAPCVTKGSDGACQLDMYFFHDLVPAGPDELLE 478
[Close]
BLAST of mRNA_S-dermatodea_contig11881.1182.1 vs. uniprot
Match: W4FPE5_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FPE5_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 4.110e-12
Identity = 42/74 (56.76%), Postives = 53/74 (71.62%), Query Frame = 1 
Query:  706 IDAYLQDRELEVVVILEGTDTSTGSTVQARHSYCWEDILWDRTFASCVSRG--TDGACEVDFAKFHDTLKVPDD 921
            I+ +L+  ELEVVVILEGTD++TG+T+QAR SY   D+ W+ TFA CVSR   T+GA  +DF KFHD    P D
Sbjct:  330 IERHLRRSELEVVVILEGTDSTTGNTMQARFSYTAHDMSWNHTFARCVSRDPVTNGA-HIDFDKFHDLRAAPAD 402
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11881.1182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEB6_ECTSI3.650e-9556.00IRK_C domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K8M2_9PHAE1.080e-9056.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZBX5_9STRA7.860e-3159.78IRK_C domain-containing protein n=1 Tax=Tribonema ... [more]
A0A7S3HDT6_9STRA1.790e-1644.83Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S1UC37_9STRA2.850e-1648.28Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A6G0WDP0_9STRA9.610e-1455.95Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485LG44_9STRA9.750e-1453.57Aste57867_20860 protein n=1 Tax=Aphanomyces stella... [more]
A0A1Z5KHZ1_FISSO2.660e-1250.67Potassium inwardly-rectifying channel subfamily J ... [more]
A9UNU4_MONBE3.280e-1245.78Uncharacterized protein n=1 Tax=Monosiga brevicoll... [more]
W4FPE5_9STRA4.110e-1256.76Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11881contigS-dermatodea_contig11881:2391..7243 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score219.9
Seed ortholog evalue1.3e-54
Seed eggNOG ortholog2880.D8LEB6
KEGG koko:K05005,ko:K05330
KEGG TC1.A.2.1.14,1.A.2.1.15,1.A.2.1.9
KEGG Pathwayko04725,ko04921,map04725,map04921
EggNOG free text desc.inward rectifier potassium channel activity
EggNOG OGsKOG3827@1,KOG3827@2759
Ec32 ortholog descriptionPotassium channel, inwardly rectifying, Kir
Ec32 orthologEc-00_001630.2
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04040
Hectar predicted targeting categoryother localisation
Exons5
Model size1746
Cds size723
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924221.3601198-UTR-S-dermatodea_contig11881:2390..31791622924221.3601198-UTR-S-dermatodea_contig11881:2390..3179Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11881 2391..3179 -
1694079103.2584407-UTR-S-dermatodea_contig11881:2390..31791694079103.2584407-UTR-S-dermatodea_contig11881:2390..3179Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11881 2391..3179 -
1622924221.3987064-UTR-S-dermatodea_contig11881:5393..54031622924221.3987064-UTR-S-dermatodea_contig11881:5393..5403Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11881 5394..5403 -
1694079103.298755-UTR-S-dermatodea_contig11881:5393..54031694079103.298755-UTR-S-dermatodea_contig11881:5393..5403Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11881 5394..5403 -
1622924221.410648-UTR-S-dermatodea_contig11881:5894..60171622924221.410648-UTR-S-dermatodea_contig11881:5894..6017Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11881 5895..6017 -
1694079103.313173-UTR-S-dermatodea_contig11881:5894..60171694079103.313173-UTR-S-dermatodea_contig11881:5894..6017Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11881 5895..6017 -
1622924221.4212897-UTR-S-dermatodea_contig11881:7142..72431622924221.4212897-UTR-S-dermatodea_contig11881:7142..7243Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11881 7143..7243 -
1694079103.3314342-UTR-S-dermatodea_contig11881:7142..72431694079103.3314342-UTR-S-dermatodea_contig11881:7142..7243Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11881 7143..7243 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924221.3716016-CDS-S-dermatodea_contig11881:3179..33471622924221.3716016-CDS-S-dermatodea_contig11881:3179..3347Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11881 3180..3347 -
1694079103.2757206-CDS-S-dermatodea_contig11881:3179..33471694079103.2757206-CDS-S-dermatodea_contig11881:3179..3347Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11881 3180..3347 -
1622924221.379714-CDS-S-dermatodea_contig11881:4378..47561622924221.379714-CDS-S-dermatodea_contig11881:4378..4756Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11881 4379..4756 -
1694079103.2831128-CDS-S-dermatodea_contig11881:4378..47561694079103.2831128-CDS-S-dermatodea_contig11881:4378..4756Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11881 4379..4756 -
1622924221.387807-CDS-S-dermatodea_contig11881:5216..53931622924221.387807-CDS-S-dermatodea_contig11881:5216..5393Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11881 5217..5393 -
1694079103.2906692-CDS-S-dermatodea_contig11881:5216..53931694079103.2906692-CDS-S-dermatodea_contig11881:5216..5393Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11881 5217..5393 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11881.1182.1prot_S-dermatodea_contig11881.1182.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11881 3180..5393 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11881.1182.1

>prot_S-dermatodea_contig11881.1182.1 ID=prot_S-dermatodea_contig11881.1182.1|Name=mRNA_S-dermatodea_contig11881.1182.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=241bp
MKRRMLRVEMERRREEKRKARKVETDYLSAASMARLSRAGFGRLERRASI
MHIGDGVTEPTIPYSAENRADSMKKIRDMGLGKVSESSELPVPNPEAGME
RLPSLTDTAPGSPPLGSSGSGFSVASAAIAAAAAAAAGTPCATLTPTQWF
AREERRAIDAYLQDRELEVVVILEGTDTSTGSTVQARHSYCWEDILWDRT
FASCVSRGTDGACEVDFAKFHDTLKVPDDCAEHGFIQSFA*
back to top

mRNA from alignment at S-dermatodea_contig11881:2391..7243-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11881.1182.1 ID=mRNA_S-dermatodea_contig11881.1182.1|Name=mRNA_S-dermatodea_contig11881.1182.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4853bp|location=Sequence derived from alignment at S-dermatodea_contig11881:2391..7243- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGAGCCCCGAAGCTTCCAGCCTCGGTAGCGCGAGAGACAACCAGGGGTA
CAGGCGCGACAGCCAGTACAATCAGTACTGGGAAGAGACGGCGTTCTCGG
AGTGAGTTGTTACTCGACGACGGCGAGCTTGGCTGTCGTGACGAACGTCC
CGTCGCCTTTGTATTTATCACCTTCTGACCACGAGCGGGGTTGGCAGCAG
TTAGCGGGCCGGTCGGTTGTACGTGCGGCAAATCAATAATTCAATGAATC
AACCGATCGATTAATCACTCAATCGATTTATCAAGCAATCAATCAATCGA
TTAATCAATCAAACATTCAATCGATCCGTGTTTACCGGTGGAGCACGGAC
GACAAAAAGGCGTCTGTCGGCTTGTTTCTATTTAGTTTTTAGTTTTTAGT
TTTTAGTTTTTTGTTTTTGCTCATCAGTAGTGGGGCTCTCCCGGCCGCCG
TAATGACTGTTTTGTTTGCCTGGAGGCGTTTTTCGTCGGCATTTTGGTTT
AGGTAAAGGGTGCAAGGCGGCCCAAGCAGCAGCACCGCCAGTGGACCGAG
AATCATACGCATACACGCTATCCCCATACCTGTAGTAGATGCAACTGTGT
TGACCTTTCAGCTATATAGCTATATGCACGAAAGAAGGAGCTGGCAAAAT
GAAACAGTACCCTCATACCCCCCCCCCTAGCGGTAGCTACACTGCGGGAG
ATGAGAAGTGGCCTGAGAAAGCGAGAAGTGACGTAGAGAGGACAGGAAAT
TGTTTTTGCGCCGCCTATGGCAAGGTACAGTAGGAAGAAACGATTGGCCA
TCGGTGATTTTATCGATCCTGTGTGGACAATGCTCCGTCCTTCCGAGGAC
GCGTGGTCAATGGTCTAACAGCAAAGGAATGCAAAGCATGAGTACCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACC
GCACCCAACCACCGACACCACNNNNNNNNNNAGGTTTTTTATTAGATCCT
GGGTGCAAAATAGTCCCTCCTCCCCGGGACCCGGGGTCAAAGGTACAAAA
ACAAAAAAAAAAAAAAAAAGAACCCCCCCCCCCCCCCCCCCCCCCCCCTC
GCCCCCCCTCACCCCCCCCCGTAAAGAGGAAACATTTATAGACCTTACGT
GAGACCAGCTCCCCCCACGCCTCCCCGCAAAACCCGGCACCCGCCCTCTG
CTCTTGGCGACTGTTTCTTTGCTAAGGGTCGGTGCTAACGGCAGCGAGCG
CGGTGGCGTGGAGAGGGTGGCCGACAGCGTGGGCTACGTGCACCGATTCC
CGGACCTTCTGAAGCGCTGGGACGATGTGGACGGCGATCGTGGGACTTGG
TAAGAAACGCTCCCTGTTGATTCACGGCGGGCTCGCTTTTTTTCTTGTTT
TCTTGTTTTCTTGTTTTCTTGTTTTCTTCTATTAATAGGATCTGTGGAGG
TGGTGGTGGTGGTGGTGGTGGTTGTGTTTTTTTTTGTTTTTTGTATAGTG
GCTTTATGTGTGGTTGGTTTGTCGTGGGCGATTTGTTTTTTGTTCGGGTC
GTTCTGCGCTGCAGCACAGAAACGATACAAAGCCACGGGACGGGGTCAGA
AGGCTGGGGCACACCCCTCGGGTGTGAGACGGTTCGAATGAGCGCCATTT
TGCTTGTTTTCTATGCAACAAAACGCGTGCGCATACAGTATGTAGCCGCA
CACACTTCGTATCATTGTGCCCTCCCCCAAGACGTGCATCTCTTGTTTTT
ATTATCCTCTGTCCAAATCCAAATCCAAATCCATCCCGCGCTTGATTTCT
GACCGTTCACTCGCGGCACGACAATACACAAAACCCTAAGGTACGAGGTG
ATGAAGCGCCGAATGCTGAGGGTGGAAATGGAGAGGAGGCGCGAGGAGAA
GCGAAAAGCCCGCAAGGTGGAGACGGACTACCTATCTGCCGCTTCGATGG
CCCGCCTGTCTCGGGCGGGCTTCGGGCGCTTGGAGCGGCGCGCTTCAATC
ATGCACATCGGCGATGGGGTAACGGAGGTGGGTTCAGATACAACATTGTT
TTAATACTACTAATACTCTTCTGCAAGCGCGCCCGTAGGCCCACCACTCG
ACGCAAGATTAGTTGTTTTCCTTTCGTGAAAGTCGGCCGTCGCAATACTG
GGAGTGACACGTTTGTTTGTTTGGTTGATTGCTTGCTTGCTTGATTCGCC
CTGGTTTCTTCGGCGATGAGCTCCTCGGATGATCGACTTCGTGCGATATG
GATGGATACATCTACAAAACATGGTGTGAACGGTATCGTCTCAAATTCAC
GCTGCCTCCAAACCCGGCCGTGGTCCGTACAGCCTTTTCTAATATACATA
TACAAGAAACAGGCATGTATGCTGTATACAAGACAGGACGCTTGGTTTTT
CTCACACATCTGGTACACGAACAACGCTGAGACCACCCTTGACCCGCCCC
CGCCGCCGCACGTATGCACGCACGCGCGTGCATTCAGCCGACGATCCCCT
ATTCCGCGGAGAACCGCGCAGACAGCATGAAGAAGATACGGGATATGGGC
CTAGGAAAAGTCTCGGAAAGTTCCGAGCTGCCCGTACCCAACCCAGAGGC
TGGCATGGAGAGGTTGCCCTCCCTGACCGATACAGCCCCGGGTTCTCCCC
CCCTAGGTTCCTCGGGCAGCGGGTTCTCTGTTGCCTCTGCGGCTATTGCT
GCTGCTGCCGCCGCCGCCGCTGGGACGCCCTGTGCGACGCTAACCCCGAC
GCAGTGGTTCGCCCGAGAGGAGCGCAGGGCCATCGACGCTTATCTGCAGG
ACCGAGAGCTGGAGGTGGTTGTGATTCTCGAGGGGACCGACACGTCGACA
GGGTCCACCGTTCAGGTGTGGCGTCGCATGTGTAATATAGGAGAGGTGGC
AGAAGGAGCGGAAGATAGAGAGAGAGATGTAGAGAGAGCTCTGAGAAGGA
GAACTTGAGAGCGATTCTACTGTAGGGGCGCTTCGTTGTACGAAGTGAGC
TGCGTTTTGGAAGCGACTACGATATAGCCAGATTTCTCTGGGCCAAGACA
AAACAGTCAAGGCTGTTCTCTCCGGCGTGGAGCTGGGCGGCGAACGTTGT
TTCGGTGTCGGATACCAGTGTAGTATGGTCGATTTTTGGGCCGCTGTTTG
AGTTGGCTCACGTGCAACCAAACGTGCAACTCATACCGTAGGGTGCCTCT
TGACAGATGCAACCATGAGGGCTTTCTTGATGCGGCGTTTTTATTTTTAT
TTTCGAGCCTTCTCCTCGTCGGGGGGGCTTCCCGGTAAGGCGGGGAAGGT
TGTGGGTCTGTTTCAGTGCCCGCCGCCAGAGTTGTTTGCCGCGGAAAGCG
CCGTCGACAGAGCATGGGCAAGCAGAGTCGGAGTGGTCGGAGAACTGCGG
GAATGCTGAACCCACTGCGCCACAGCAACCCAAGGAGTGTACCGGGGGGA
GGTGGGGCCGATCCCTCGTGACCACACAAGGGGTTTCGGGTAAAAGGCCA
GTCGGTAGTATGTGAAACACACACACTCCCCTAAAACAAGACAGTATTTA
TACAACACAGAGCGAGCGTTAGCGTCCAATTTTTTTTGCAGAGGAACTAT
GGCCCCAAGCTATCTCAACGAAGGTCTACGCTGTTTTTGATGCTGTGGGG
TAGTTCTAGAAATGTCACTGTCTGGGTGGAGGTGTGGCACTACAACACCC
CCCCCCCCTACCCCTGAGGCCTTGTCCGCTTCCTCTGTATGCCAGCTACT
GTATACTCGATTAGGCTCCCCTCTCGTAGAGCGGCGTCGAAAGGACAACC
AAACGCATGGGAAGAGACCGCAGGGGCAATCGGCTCCCCTTTCCGCATTC
GTAATCGCAATCATGAGCCCCCCGCTCTGCCGCGCCTTCCCCTTAGGCTC
GCCACTCATACTGCTGGGAGGACATACTCTGGGACCGGACCTTCGCTAGC
TGTGTGTCGCGCGGAACCGACGGCGCTTGCGAGGTGGACTTCGCCAAGTT
CCACGACACGCTCAAAGTGCCGGATGATTGCGCCGAGCACGGCTTCATCC
AGTCATTCGCGTAAGGCCGATCGACCTGTCCCATTTTCGCGGCAGGCACG
CTGAGAGGGCCGGAGGCCTTCCGTCAGGTCGCTCGATTGGCGGGTGTTTT
GGGACTCGCTTTTTTCGTTTTACCTCCCCTCGGTTTTGTTGACAGCTCGA
GTGGGGGGGGGGGAGGAGTGGGGTATCTCGGTTTATTTCCCATTTTCTAC
CGAGCGCATCGGCTCTGCGACGGGTTTCCCGCGCGTTTGGTTGGCTTGTC
CCTCATGCTCCCACGGCGAGAGACCAATGAGACCTTTGCTGTTTTTTTTC
TGTGCATCTGCTGAGGATGTGCTTTCTGATTTATTTTTTGCATCTGGGCA
TTATGCCCCTCGGCGGGGAGCTGTGGCAACAAAATGCTCCGTTCAAGTTC
CGTCTGTCTCTGTTACGTGTTTGAGTCGCTCGGAAGAGACGATTCATGTG
TTAATGGATATTTTTATCGCTCGCCGTGGTCCTTACGTTTCCGACATTTA
CCTGACCCTGACCACCTGGGGTAATCGGTGTTATGTCTTGCGTGCTGGCG
CTGCTGTTTTCTAGATCTCCTTGCGTTCTCGGGCGGCTCCACGCGCGCGT
TGGAAAGGCGCGGCGCGCGAGAGGTTTTCTTGTTCTGTCCAAGTGGCGTT
TGTGAGGACGGGATCACGAGCGCGAACAAGCCTTTTTTTCCCGTGGTTGC
TGTGTGTGCATGGTGTTTACAGGAGGCCGTCCGCGCAAAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGGGGGGGCTTCTGCTTGCCGTATCATCTGCA
TAG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig11881:2391..7243-

>mRNA_S-dermatodea_contig11881.1182.1 ID=mRNA_S-dermatodea_contig11881.1182.1|Name=mRNA_S-dermatodea_contig11881.1182.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1446bp|location=Sequence derived from alignment at S-dermatodea_contig11881:2391..7243- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAGCGCCGAATGCTGAGGGTGGAAATGGAGAGGAGGCGCGAGGAGAA
GCGAAAAGCCCGCAAGGTGGAGACGGACTACCTATCTGCCGCTTCGATGG
CCCGCCTGTCTCGGGCGGGCTTCGGGCGCTTGGAGCGGCGCGCTTCAATC
ATGCACATCGGCGATGGGGTAACGGAGATGAAGCGCCGAATGCTGAGGGT
GGAAATGGAGAGGAGGCGCGAGGAGAAGCGAAAAGCCCGCAAGGTGGAGA
CGGACTACCTATCTGCCGCTTCGATGGCCCGCCTGTCTCGGGCGGGCTTC
GGGCGCTTGGAGCGGCGCGCTTCAATCATGCACATCGGCGATGGGGTAAC
GGAGCCGACGATCCCCTATTCCGCGGAGAACCGCGCAGACAGCATGAAGA
AGATACGGGATATGGGCCTAGGAAAAGTCTCGGAAAGTTCCGAGCTGCCC
GTACCCAACCCAGAGGCTGGCATGGAGAGGTTGCCCTCCCTGACCGATAC
AGCCCCGGGTTCTCCCCCCCTAGGTTCCTCGGGCAGCGGGTTCTCTGTTG
CCTCTGCGGCTATTGCTGCTGCTGCCGCCGCCGCCGCTGGGACGCCCTGT
GCGACGCTAACCCCGACGCAGTGGTTCGCCCGAGAGGAGCGCAGGGCCAT
CGACGCTTATCTGCAGGACCGAGAGCTGGAGGTGGTTGTGATTCTCGAGG
GGACCGACACGTCGACAGGGTCCACCGTTCAGCCGACGATCCCCTATTCC
GCGGAGAACCGCGCAGACAGCATGAAGAAGATACGGGATATGGGCCTAGG
AAAAGTCTCGGAAAGTTCCGAGCTGCCCGTACCCAACCCAGAGGCTGGCA
TGGAGAGGTTGCCCTCCCTGACCGATACAGCCCCGGGTTCTCCCCCCCTA
GGTTCCTCGGGCAGCGGGTTCTCTGTTGCCTCTGCGGCTATTGCTGCTGC
TGCCGCCGCCGCCGCTGGGACGCCCTGTGCGACGCTAACCCCGACGCAGT
GGTTCGCCCGAGAGGAGCGCAGGGCCATCGACGCTTATCTGCAGGACCGA
GAGCTGGAGGTGGTTGTGATTCTCGAGGGGACCGACACGTCGACAGGGTC
CACCGTTCAGGCTCGCCACTCATACTGCTGGGAGGACATACTCTGGGACC
GGACCTTCGCTAGCTGTGTGTCGCGCGGAACCGACGGCGCTTGCGAGGTG
GACTTCGCCAAGTTCCACGACACGCTCAAAGTGCCGGATGATTGCGCCGA
GCACGGCTTCATCCAGTCATTCGCGTAAGCTCGCCACTCATACTGCTGGG
AGGACATACTCTGGGACCGGACCTTCGCTAGCTGTGTGTCGCGCGGAACC
GACGGCGCTTGCGAGGTGGACTTCGCCAAGTTCCACGACACGCTCAAAGT
GCCGGATGATTGCGCCGAGCACGGCTTCATCCAGTCATTCGCGTAA
back to top