mRNA_S-dermatodea_contig11873.1177.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11873.1177.1
Unique NamemRNA_S-dermatodea_contig11873.1177.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11873.1177.1 vs. uniprot
Match: A0A6H5KKK8_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK8_9PHAE)

HSP 1 Score: 373 bits (957), Expect = 2.670e-113
Identity = 242/434 (55.76%), Postives = 285/434 (65.67%), Query Frame = 1 
Query:    1 GASGAGKSTFLDLLAGRKADGECAGQIFLAGDAG---------RGG-GRGRASVYVTQADFHVAELTVRESLAFAVRLGMGGHGVSDEDRRVRVEELLGVLGLESCGDVRVGNPIERGISGGQARRLSVGVGVADLESVRLLLLDEPTTGLDSSSATEVLLLARRLATRGGRRAVVASVHQPSPEMFALFDKASRRSVLVLVDGHQAFFGSVSDASTVLSRPEIGVIPSPGQNPAEFILLAAKAIAATATST---ASWRQEFSPERSSSFREVSSDFSEPEPVGIGGIE------------------------YLYDD-------EGPEGINTEAVTRGGWRGEEREERSRRSGNGGEEGGGFTGGL--RRAWG----GEDAAYAVGFLAQLSVVWSRAWTVQARRKDSLWALFVKNTFVGILTTAVFWQEAAV 1152
            GASGAGKSTFLDLLAG+K +GECAGQI L    G         RGG G+GR SVYVTQ DFHVAELTVRESLAFAVRL MGG    + DRR RVEELL VLGL +C DVRVGNP+ERGISGG+ARRLS+G+GVA LESVRLLLLDEPTTGLDSSSA EV+LLAR+LA+R  RR VVASVHQPS EMF+LFDK     VLV+V G QAFFGS S A+ +LSRPE+G++P+PGQN AEFILLAAKA+  ++      AS R   SPE S +   + S  S   P G+ G++                        YLY+D       E P G       +GG+  EE  E  +  G         T  L  R+ WG     E++++AVGF AQ+S VW R WTVQARRKD+L AL  KN F+G+L   VF+Q+ AV
Sbjct:  212 GASGAGKSTFLDLLAGKKKEGECAGQILLTQSGGXXXGIGRWRRGGKGQGRPSVYVTQDDFHVAELTVRESLAFAVRLSMGGR---ERDRRARVEELLDVLGLRACADVRVGNPLERGISGGEARRLSMGIGVAALESVRLLLLDEPTTGLDSSSAAEVMLLARKLASRRDRRVVVASVHQPSAEMFSLFDK-----VLVMVGGRQAFFGSASKAADILSRPELGIMPTPGQNSAEFILLAAKAVLQSSQQEGGRASRRGARSPEPSYASSSIHSSAS-TSPQGLIGVDPSSLLGVGDGXXXXXXXXSTMGGDYLYEDAEKGLFNEPPGGKPAAYGGKGGYAEEEGAEEGKEEGT-------TTLELLQRQPWGIGGWFEESSHAVGFWAQVSAVWGRGWTVQARRKDTLKALLFKNAFIGVLAATVFFQKGAV 629
[Close]
BLAST of mRNA_S-dermatodea_contig11873.1177.1 vs. uniprot
Match: D8LSM2_ECTSI (ABC transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM2_ECTSI)

HSP 1 Score: 261 bits (667), Expect = 1.040e-82
Identity = 149/215 (69.30%), Postives = 163/215 (75.81%), Query Frame = 1 
Query:    1 GASGAGKSTFLDLLAGRKADGECAGQIFLAGDAG--------------RGG-GRGRASVYVTQADFHVAELTVRESLAFAVRLGMGGHGVSDEDRRVRVEELLGVLGLESCGDVRVGNPIERGISGGQARRLSVGVGVADLESVRLLLLDEPTTGLDSSSATEVLLLARRLATRGGRRAVVASVHQPSPEMFALFDKASRRSVLVLVDGHQAFFG 600
            GASGAGKSTFLDLLAG+K +GECAGQI L    G              RGG GRGR SVYVTQ DFHVAELTVRESLAFAVRL MGG    + DRR RVEELL VLGL +C +VRVGNP+ERGISGG+ARRLS+G+GVA LESVRLLLLDEPTTGLDSSSA EV+LLAR+LA+R  RR VVASVHQPS EMF+LFDK   R   +   G Q   G
Sbjct:    6 GASGAGKSTFLDLLAGKKKEGECAGQILLTQSGGXXXXXXXXXIGRWRRGGKGRGRPSVYVTQDDFHVAELTVRESLAFAVRLSMGGR---ERDRRARVEELLDVLGLRACAEVRVGNPLERGISGGEARRLSMGIGVAALESVRLLLLDEPTTGLDSSSAAEVMLLARKLASRRDRRVVVASVHQPSAEMFSLFDKVDARGARITKRGRQRPIG 217
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BLAST of mRNA_S-dermatodea_contig11873.1177.1 vs. uniprot
Match: W7TLH8_9STRA (Abc transporter g family member 29 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TLH8_9STRA)

HSP 1 Score: 169 bits (427), Expect = 2.080e-42
Identity = 103/231 (44.59%), Postives = 143/231 (61.90%), Query Frame = 1 
Query:    1 GASGAGKSTFLDLLAGRKADGECAGQIFLAGDAGRGGGRGRASVYVTQADFHVAELTVRESLAFAVRLGMGGHGVSDEDRRVRVEELLGVLGLESCGDVRVGNPIERGISGGQARRLSVGVGVADLESVRLLLLDEPTTGLDSSSATEVLLLARRLATRGGRRAVVASVHQPSPEMFALFDKASRRSVLVLVDGHQAFFGSVSDASTVLSRPEIGVIPSPGQNPAEFILLA 693
            G SGAGK+T LD+LAGRK  G   G++F  G AG    +     YVTQ + H+   TVRE+L FA  L +   GV    R   V+++LG+LGL+S  DV VG+ + +GISGGQARRL++GV + +L    ++ LDEPTTGLDS+ + EV+   R LA +   R V  ++HQPS E+FALFDK     ++++  G Q +FG+  +A    S P +    S G NPAEF++ A
Sbjct:  695 GGSGAGKTTLLDVLAGRKTAGLIEGEVFFNGKAGMPSPK--LCSYVTQDNVHIGCFTVRETLHFAALLRIK-EGVRPAQREKMVDDVLGMLGLDSVADVMVGDSLRKGISGGQARRLTIGVEIINLPG--MIFLDEPTTGLDSNISYEVMAAVRNLANQN--RTVCCTIHQPSIEVFALFDK-----LILMAKGEQVYFGATHEAVKYFSSPALDFAFSKGVNPAEFVMSA 913
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BLAST of mRNA_S-dermatodea_contig11873.1177.1 vs. uniprot
Match: W7TH06_9STRA (Atp-binding cassette superfamily n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TH06_9STRA)

HSP 1 Score: 162 bits (409), Expect = 4.540e-40
Identity = 103/229 (44.98%), Postives = 138/229 (60.26%), Query Frame = 1 
Query:    1 GASGAGKSTFLDLLAGRKADGECAGQIFLAGDAGRGGGRGRASVYVTQADFHVAELTVRESLAFAVRLGMGGHGVSDEDRRVRVEELLGVLGLESCGDVRVGNPIERGISGGQARRLSVGVGVADLESVRLLLLDEPTTGLDSSSATEVLLLARRLATRGGRRAVVASVHQPSPEMFALFDKASRRSVLVLVDGHQAFFGSVSDASTVLSRPEIGVIPSPGQNPAEFIL 687
            G SGAGKST LDLLA RK  G   G+ ++ G A +   +  +  YVTQ + H++  TVRE+L FA  L +   G+  E RR R E+++ +LGLE   DV VGN + +GISGGQARRLS+GV +  L  V  L LDEPTTGLDS  + EV+   R +A     R VV ++H PS  ++ LFD     S+L+L  G Q +FGS   A T  S   +G     G+NPA+F++
Sbjct:  682 GGSGAGKSTLLDLLAHRKTGGFITGEYYIGGQAEKPSSKWCS--YVTQDNVHISLFTVRETLEFAALLRLK-EGIPVEKRRERAEDVMKMLGLEDVADVPVGNALVKGISGGQARRLSIGVEIMHLPDV--LFLDEPTTGLDSQISHEVMSSVRNIANHN--RTVVCTIHSPSKAVYELFD-----SLLLLALGRQTYFGSAEAAPTYFSLLTLGWCMPIGKNPADFLM 898
[Close]
BLAST of mRNA_S-dermatodea_contig11873.1177.1 vs. uniprot
Match: D8LSM1_ECTSI (ABC transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM1_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 1.520e-35
Identity = 110/243 (45.27%), Postives = 142/243 (58.44%), Query Frame = 1 
Query:    1 GASGAGKSTFLDLLAGRKAD--GECAGQIFLAGDAGRGGG---RGRA---SVYVTQADFHVAELTVRESLAFAVRLGMGGHGVSDEDRRVRVEELLGVLGLESCGDVRVGNPIERGISGGQARRLSVGVGVADLESVRLLLLDEPTTGLDSSSATEVLLLARRLATRGGRRAVVASVHQPSPEMFALFDKASRRSVLVLVDGHQAFFGSVSDASTVLSRPEIGVIPSPG------QNPAEFIL 687
            G SG+GK+T LDLL GRK    G   G I + G  GR GG   RG     S YV Q + H A LTVR++L FA +L M  + V+ EDR  RV  ++ +LGLE   +  VG+   RGISGG+A+RLSV V   DL    LLLLDEPT+GLD+++A EVL   R LA  G  R V+ S+HQPS EMF L D      +L+   G+ A+FG  + A    +   +G+ P P       QNPA+F+L
Sbjct:  700 GPSGSGKTTLLDLLGGRKTRSVGRQEGDIVVDGVFGREGGVVSRGSGVGGSAYVMQDNVHHASLTVRQTLQFAAKLRMC-NTVTAEDREKRVAAMVTMLGLEGVLETTVGDESNRGISGGEAKRLSVAVEAIDLPG--LLLLDEPTSGLDATTALEVLTAVRGLADLG--RTVILSLHQPSGEMFELLDVC----LLLARGGYPAYFGRANRAMAYFAS--VGLTPPPSSASVTDQNPADFLL 931
[Close]
BLAST of mRNA_S-dermatodea_contig11873.1177.1 vs. uniprot
Match: A0A427XLU8_9TREE (ABC transporter domain-containing protein n=1 Tax=Apiotrichum porosum TaxID=105984 RepID=A0A427XLU8_9TREE)

HSP 1 Score: 147 bits (371), Expect = 1.810e-35
Identity = 104/234 (44.44%), Postives = 139/234 (59.40%), Query Frame = 1 
Query:    1 GASGAGKSTFLDLLAGRKA--DGECAGQIFLAGDAGRGGGRGRASVYVTQADFHVAELTVRESLAFAVRLGMGGHGVSDEDRRVRVEELLGVLGLESCGDVRVGNPIERGISGGQARRLSVGVGVADLESVRLLLLDEPTTGLDSSSATEVLLLARRLATRGGRRAVVASVHQPSPEMFALFDKASRRSVLVLVDGHQAFFGSVSDASTV---LSRPEIGVIPSPGQNPAEFIL 687
            G SGAGKST LDL+A RK   DG   G++ L G+          S YV Q D H+  LTVRE++++A RL   G   S    R RV+E++  LGL+SC + ++G PI+RGISGGQ RR++VG G+      R+L LDEPT+GLDSSSA EV+   RR+A   G   V+A++H PS E   LFD+     ++VL  G  AF GS+ +A      L RP    IP+   NP + +L
Sbjct:   83 GPSGAGKSTLLDLMAFRKRAMDG---GEVRLNGNLLSNSTMSHVSSYVEQDDEHLGVLTVRETISYASRLSASGF--SRSQTRQRVDEIIQALGLQSCANQKIGTPIQRGISGGQKRRVTVGTGLVTYP--RILFLDEPTSGLDSSSAREVMASIRRIAEAEGIT-VIATIHAPSIETLELFDQ-----LMVLAKGKVAFLGSLVEAEVRCRDLGRP----IPN-YHNPGDHLL 298
[Close]
BLAST of mRNA_S-dermatodea_contig11873.1177.1 vs. uniprot
Match: A0A0J0XT02_9TREE (p-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Cutaneotrichosporon oleaginosum TaxID=879819 RepID=A0A0J0XT02_9TREE)

HSP 1 Score: 145 bits (365), Expect = 8.400e-35
Identity = 97/229 (42.36%), Postives = 139/229 (60.70%), Query Frame = 1 
Query:    1 GASGAGKSTFLDLLAGRKADGECAGQIFLAGDAGRGGGRGRASVYVTQADFHVAELTVRESLAFAVRLGMGGHGVSDEDRRVRVEELLGVLGLESCGDVRVGNPIERGISGGQARRLSVGVGVADLESVRLLLLDEPTTGLDSSSATEVLLLARRLATRGGRRAVVASVHQPSPEMFALFDKASRRSVLVLVDGHQAFFGSVSDASTVLSRPEIGVIPSPGQNPAEFIL 687
            G SGAGKST LD+++ RK   E  G I L G           S +V Q D H   LTVRE++ FA RL   G   +  + R RV++++  LGL+SC ++++G PI+RGISGGQ RR++VG G+      R+L LDEPT+GLDS+SA EV+   RR+A   G   V+A++H PS +   LFD+     ++VL  G  AF G++++A+   +  +IG    P QNPA+ +L
Sbjct:   41 GPSGAGKSTLLDIMSFRKKAME-GGSIRLNGTPLTATTMSEVSSFVEQDDQHYGVLTVRETIGFASRLTNTGQ--TRAETRQRVDDIVHALGLQSCANLKIGTPIQRGISGGQKRRVTVGTGLVTYP--RILFLDEPTSGLDSASAREVVASIRRIAQAEGI-IVIATIHSPSVDTLQLFDQ-----MMVLAKGRTAFRGTMAEAAARCT--DIGYPMPPFQNPADHLL 256
[Close]
BLAST of mRNA_S-dermatodea_contig11873.1177.1 vs. uniprot
Match: R1E7G8_EMIHU (ABC transporter domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E7G8_EMIHU)

HSP 1 Score: 145 bits (366), Expect = 2.080e-34
Identity = 97/229 (42.36%), Postives = 129/229 (56.33%), Query Frame = 1 
Query:    1 GASGAGKSTFLDLLAGRKADGECAGQIFLAGDAGRGGGRGRASVYVTQADFHVAELTVRESLAFAVRLGMGGHGVSDEDRRVRVEELLGVLGLESCGDVRVGNPIERGISGGQARRLSVGVGVADLESVRLLLLDEPTTGLDSSSATEVLLLARRLATRGGRRAVVASVHQPSPEMFALFDKASRRSVLVLVDGHQAFFGSVSDASTVLSRPEIGVIPSPGQNPAEFIL 687
            G SG GKST LD+LA RK  GE AG++ L G   R     R S YV Q D     LTVRE LA+   L + G G +   R   VE ++  L L    D R+G    RGISGGQARR++VGV +    SV  L LDEPTTGLD+ S+  ++   RRLA  G  R V+ ++HQP  ++FALFD     ++L++  G  A+FG  +     L    +G+    G NPA+F++
Sbjct:  259 GPSGCGKSTLLDVLADRKKGGEIAGEVLLNGKR-RDAYFKRVSAYVMQFDALFETLTVREMLAYTAELRLTGGGETSRVREAAVERVIRDLDLTKVADTRIGGATRRGISGGQARRVTVGVELVTSPSV--LFLDEPTTGLDAYSSLLLVRALRRLADSG--RTVLCTIHQPRADIFALFD-----TLLLMAAGKAAYFGPTASIGAYLGS--LGIRLPSGTNPADFVV 475
[Close]
BLAST of mRNA_S-dermatodea_contig11873.1177.1 vs. uniprot
Match: A0A0D2X4M0_CAPO3 (ATP-binding cassette transporter sub-family G member 2c n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2X4M0_CAPO3)

HSP 1 Score: 145 bits (365), Expect = 2.090e-34
Identity = 94/229 (41.05%), Postives = 139/229 (60.70%), Query Frame = 1 
Query:    1 GASGAGKSTFLDLLAGRKADGECAGQIFLAGDAGRGGGRGRASVYVTQADFHVAELTVRESLAFAVRLGMGGHGVSDEDRRVRVEELLGVLGLESCGDVRVGNPIERGISGGQARRLSVGVGVADLESVRLLLLDEPTTGLDSSSATEVLLLARRLATRGGRRAVVASVHQPSPEMFALFDKASRRSVLVLVDGHQAFFGSVSDASTVLSRPEIGVIPSPGQNPAEFIL 687
            G SGAGKST LD+LAGRK  G   G + L  +        R   YV Q D  +  LTVRE L +  RL +     + E R  RV+ ++ VLGL+ C D  +G+   RGISGGQA+R+++G+ +  +   R+L LDEPTTGLDS+++ EV+   R++A RG  R+++ ++HQPS ++F LFD+     +L+LV G   + GS+ +  TV    ++G    PG NPA++I+
Sbjct:  178 GPSGAGKSTLLDVLAGRKTSGVIQGDL-LYNNKPMTKELHRIIGYVEQTDTLLGALTVRELLMYTARLRLPS-STTHEQRTDRVDYVINVLGLQRCADSVIGSATIRGISGGQAKRVNIGIEL--ITDCRVLFLDEPTTGLDSATSYEVMSAVRKIADRG--RSIICTIHQPSEDVFNLFDR-----LLLLVKGEVVYLGSIPN--TVPYFEKLGFKFVPGSNPADYII 393
[Close]
BLAST of mRNA_S-dermatodea_contig11873.1177.1 vs. uniprot
Match: J5QPF8_TRIAS (ABC transporter domain-containing protein n=2 Tax=Trichosporon asahii var. asahii TaxID=189963 RepID=J5QPF8_TRIAS)

HSP 1 Score: 142 bits (357), Expect = 1.230e-33
Identity = 96/231 (41.56%), Postives = 137/231 (59.31%), Query Frame = 1 
Query:    1 GASGAGKSTFLDLLAGRKA--DGECAGQIFLAGDAGRGGGRGRASVYVTQADFHVAELTVRESLAFAVRLGMGGHGVSDEDRRVRVEELLGVLGLESCGDVRVGNPIERGISGGQARRLSVGVGVADLESVRLLLLDEPTTGLDSSSATEVLLLARRLATRGGRRAVVASVHQPSPEMFALFDKASRRSVLVLVDGHQAFFGSVSDASTVLSRPEIGVIPSPGQNPAEFIL 687
            G SGAGKST LD+++ RK   DG   G I L           + S YV Q D H+  LTVRE++ +A RL   G  ++  + R RV++++  LGL+SC D+++G PI+RGISGGQ RR++VG G+      R+L LDEPT+GLDS+SA EV+   +R+A   G   V+A++H PS E  +LFDK     +++L  G  AF G++  A+   +   IG       NPA  +L
Sbjct:   63 GPSGAGKSTLLDVMSFRKKHMDG---GSITLNNQPLSAMTMAQVSSYVEQDDQHLGVLTVRETITYAARLTQSG--MTKGEIRTRVDQIITDLGLQSCADLKIGTPIQRGISGGQRRRVTVGTGLVTFP--RVLFLDEPTSGLDSTSAREVMASIKRIAEAEGI-IVIATIHAPSIEALSLFDK-----MMILAQGRTAFLGTLQQANDRCNA--IGFPIPEYMNPANHLL 278
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11873.1177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKK8_9PHAE2.670e-11355.76ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LSM2_ECTSI1.040e-8269.30ABC transporter domain-containing protein n=1 Tax=... [more]
W7TLH8_9STRA2.080e-4244.59Abc transporter g family member 29 n=2 Tax=Monodop... [more]
W7TH06_9STRA4.540e-4044.98Atp-binding cassette superfamily n=1 Tax=Nannochlo... [more]
D8LSM1_ECTSI1.520e-3545.27ABC transporter domain-containing protein n=1 Tax=... [more]
A0A427XLU8_9TREE1.810e-3544.44ABC transporter domain-containing protein n=1 Tax=... [more]
A0A0J0XT02_9TREE8.400e-3542.36p-loop containing nucleoside triphosphate hydrolas... [more]
R1E7G8_EMIHU2.080e-3442.36ABC transporter domain-containing protein n=2 Tax=... [more]
A0A0D2X4M0_CAPO32.090e-3441.05ATP-binding cassette transporter sub-family G memb... [more]
J5QPF8_TRIAS1.230e-3341.56ABC transporter domain-containing protein n=2 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11873contigS-dermatodea_contig11873:588..7113 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score261.5
Seed ortholog evalue6e-67
Seed eggNOG ortholog2880.D8LSM2
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1131@1,KOG0061@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size1152
Cds size1152
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11873.1177.1prot_S-dermatodea_contig11873.1177.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11873 588..7113 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924220.8242676-CDS-S-dermatodea_contig11873:587..7161622924220.8242676-CDS-S-dermatodea_contig11873:587..716Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11873 588..716 -
1694079102.8110974-CDS-S-dermatodea_contig11873:587..7161694079102.8110974-CDS-S-dermatodea_contig11873:587..716Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11873 588..716 -
1622924220.8354864-CDS-S-dermatodea_contig11873:2072..24631622924220.8354864-CDS-S-dermatodea_contig11873:2072..2463Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11873 2073..2463 -
1694079102.8260677-CDS-S-dermatodea_contig11873:2072..24631694079102.8260677-CDS-S-dermatodea_contig11873:2072..2463Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11873 2073..2463 -
1622924220.8472667-CDS-S-dermatodea_contig11873:3767..38381622924220.8472667-CDS-S-dermatodea_contig11873:3767..3838Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11873 3768..3838 -
1694079102.8360233-CDS-S-dermatodea_contig11873:3767..38381694079102.8360233-CDS-S-dermatodea_contig11873:3767..3838Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11873 3768..3838 -
1622924220.8583438-CDS-S-dermatodea_contig11873:4246..43901622924220.8583438-CDS-S-dermatodea_contig11873:4246..4390Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11873 4247..4390 -
1694079102.8456504-CDS-S-dermatodea_contig11873:4246..43901694079102.8456504-CDS-S-dermatodea_contig11873:4246..4390Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11873 4247..4390 -
1622924220.8687456-CDS-S-dermatodea_contig11873:5063..52531622924220.8687456-CDS-S-dermatodea_contig11873:5063..5253Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11873 5064..5253 -
1694079102.8566608-CDS-S-dermatodea_contig11873:5063..52531694079102.8566608-CDS-S-dermatodea_contig11873:5063..5253Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11873 5064..5253 -
1622924220.8774095-CDS-S-dermatodea_contig11873:6886..71131622924220.8774095-CDS-S-dermatodea_contig11873:6886..7113Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11873 6887..7113 -
1694079102.8668306-CDS-S-dermatodea_contig11873:6886..71131694079102.8668306-CDS-S-dermatodea_contig11873:6886..7113Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11873 6887..7113 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11873.1177.1

>prot_S-dermatodea_contig11873.1177.1 ID=prot_S-dermatodea_contig11873.1177.1|Name=mRNA_S-dermatodea_contig11873.1177.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=384bp
GASGAGKSTFLDLLAGRKADGECAGQIFLAGDAGRGGGRGRASVYVTQAD
FHVAELTVRESLAFAVRLGMGGHGVSDEDRRVRVEELLGVLGLESCGDVR
VGNPIERGISGGQARRLSVGVGVADLESVRLLLLDEPTTGLDSSSATEVL
LLARRLATRGGRRAVVASVHQPSPEMFALFDKASRRSVLVLVDGHQAFFG
SVSDASTVLSRPEIGVIPSPGQNPAEFILLAAKAIAATATSTASWRQEFS
PERSSSFREVSSDFSEPEPVGIGGIEYLYDDEGPEGINTEAVTRGGWRGE
EREERSRRSGNGGEEGGGFTGGLRRAWGGEDAAYAVGFLAQLSVVWSRAW
TVQARRKDSLWALFVKNTFVGILTTAVFWQEAAV
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mRNA from alignment at S-dermatodea_contig11873:588..7113-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11873.1177.1 ID=mRNA_S-dermatodea_contig11873.1177.1|Name=mRNA_S-dermatodea_contig11873.1177.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6526bp|location=Sequence derived from alignment at S-dermatodea_contig11873:588..7113- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGTGCTTCGGGCGCTGGAAAATCCACGTTTCTAGACCTCTTGGCGGGCAG
AAAAGCCGACGGAGAGTGCGCGGGGCAGATATTCCTGGCCGGGGACGCGG
GTCGGGGGGGGGGGAGGGGGAGGGCATCCGTGTACGTGACGCAGGCAGAT
TTCCACGTGGCCGAGCTTACGGTGCGAGAGAGCCTCGCGTTTGCCGTGCG
GCTGGGTATGGGAGGGCATGGTGTGAGGTGAGTTGGCGGGTCGGGTCAGA
GGACGTTGGTCCCGGCCATGATTTTGTCGTTAGAAATGTGAAATAGGAGG
AATCGAAGCCCTCCATGTGCATAATCTGTTGCTCAGGATAGCACCCGGGG
GGGGGGGGGTACGTATGTTTTGCGTGTCGTATCCAAACGGATATAGACCA
CGCATCCCGACAATGCCAGCACGGAGCGATGTGCCGGGTTTTTGCCGGCC
AGGCTGCGTTGCGACGCCAAACCGGATATGCAATGAGTTGATTGGATATA
CACCGGGCAACCATGTTTTGCACATTCAGTGGGCGTGATCATATTCCAAT
TACCCCAAAGGGCTTTCATCTCCGTGAGAACGCGTGAGTGCCGCGCGCAC
ACAACGTACACGACAGTATATTTGTACTGTTTGTATTACACTCAGACGAA
TAATCTGCACATGAGTATGATAATCCTGACGGAGTACCAATCATAACGCA
ATGGTTGCTCCAGTGCTTTCCAACAATCCATTGCTCAGTGGGTACTCTGT
GCTCTATAAGATGGGCTGCGACGTTTCAACCCTTTGAGTAGAGACAAACC
TCTTCAGCCGAAGTCCCTAAGCTCGCAGGACGTACTGCATGCCCTCATCC
ATGCCATCTAGATTGCAGATTTACAGGTCCATGCCGCAAGAGCCAACCCT
TTATCGACCAACCCCACCCCGAACACCAAAGGCAGGGGGGTTATGTATAT
TAATTTATACCGCTTTGAACGCTTTTTAATAGCGATTTAGAGTTCTCCTT
TGATGCACAATAATTGATGCCAAATTTCAACGATTTCAGAGGGGGGCCTT
AGAAGCAAGTGCTGAAAAGAGTAGGAATTTCCCCCTCACGGGCGTATTTG
TGGCTACCTACTAGTATTTATTTATTCGATGTGCTTGGGGGGGGTGAACT
TTGATCGTTTCTACTCTCTGCTTTTCATGACGACGACTATTGTGGTTGAT
TGGTTGCTTGATTGATTGTCACACCTACAACCGATCGGCCCACTAATGGT
TGCTGATCCCCCTTGTGGTCAGATGAGAAATGGAGAGATCAGAAAAACAA
ACAGAAATTCCCTCTATGGTAAATATTATGAAAAGGAATTGACACAAACT
CTCGGAAACAGAGGGACATACCTCGAAACTGGGGCCTGCTAAAATATAAG
GAAAACGGGCCCCTCCCCTACAGGAAGGGCCCATCGCACCCGCGATGTCC
TTATCGATTCTGGCAACCGTTACGCAAAAAATTCATAACTCAAGAACGCA
CCGCCAACCGCAAGCGCGAGAAATGAACTGTGGCACTACTTTGGTATACG
CATACACTCACGCCCCGTTATTGTGGCCCGGGCCCCCTTGCCCTAACTAA
AAGGATGAGTGAGTCCCACGGCTGGCTCGCCTTGTGTTGTGAATTTTTGT
TTGTCTCTAGGGGACTTCAATCGTTACGCGCAACATCAGAAAATTGCGTT
TTTCATCGGTCGCCCGAAACAAAAGGTTCCTGTGATACGATCTCAGTATG
CAGAGCATGGCGAGGTCATGTGGCAGCAAATTTAACTCTCCACCCTAACG
CTGAAAATTCAAAACTCAAAATTCAAAATTTGAACGTTAAAACTCCAAAA
TCCGGCGCAGCGATGAAGACCGCCGAGTCCGAGTGGAGGAGCTGCTTGGC
GTCCTCGGCCTTGAGTCTTGCGGCGATGTACGCGTCGGTAACCCTATAGA
GCGGGGCATCAGCGGCGGCCAGGCGAGGCGGCTCTCGGTGGGTGTGGGCG
TCGCGGATCTGGAGAGCGTTCGACTGCTGCTGCTGGACGAGCCCACGACG
GTACGCAGGAATCGTGTCGTAGTGCAAACTCTTCATTGTTTTTTTCCGCT
TTGCACGCTTTGTAAGAGCGATTTAGAGTTGACCTTTGATGCCGACTTTC
CCAACAAATCGTGTCGTGTAGGAGTTTCCTGTACAATTCGTGATGCCAAA
CGTCACAGGGATTTCAGAGTGGTAGGTTACAGAGTAGTAATTTGTGCCAA
CGCACACCTCACGGGCGTAGCCGTCGGCTACCCACTAGGATATCGTATTA
GTAGAATACATCCCGTCTGTGGTCACGAGGGGTCGATCGATCATCCCATA
TCTGTCCCCCCGGTACTATACGCTATACACTGTATAGTATACACTATCTA
CTATGTACATTATCAATCATCCCATGTCTCTCTTGCCGGTTCTTGGCTTG
CTTTTTTATCGTGCGTTGGGGTCGCCCCTCCCGCGATATCGCGAGGTTGG
TCATGGACCGCGATTACCGTCTCCTCCGAGACTGGTATCGCGAAAGCGCC
CGACACACAGGCGCACCAGCGCATCCCCGCACGTGTGCCCTGTATACAGT
GGTGATGGTGCTACCACGAACTGTTTCTCTTTGTATGTGCTCTATGGCCC
CGCGCCCTTGCGTTTTTGGTCTCTGACTTGGCGTGCATTTTCTTCTTTTG
CTGTTCGTCTCTCACTCAAAAAGGGGCTGGACTCGTCCTCTGCCACCGAG
GTGTTGCTTCTGGCGAGGCGTTTGGCGACGAGGGGGGGCAGGCGAGCCGT
GGTTGCCTCGGTGCACCAGCCGTCTCCGGAGATGTTCGCGCTCTTCGACA
AGGCGAGCCGACGATCTGTCTTCGAATCTTGAAATTATTATTACTGTATG
TAGGCGATCCATATTTCTGGTTTTGGGTGTTGTGTGCTTCCCTTGGCTCT
TGAGTGCGCATGTGACCGCGAGCTGGGTCGGACTTGGCCAATCGGCTATG
CAGTGTGAACTCACTCAATCAGGAAGTCAACCACTCCATCGATCGTTTTG
TATGCATATTGTCTATAGATGTAACCTACAAGGACCGGCATTGTCCCGAT
CCCGTCTGCGACCACAATCATCCCGTCTCGCGGTTGGCTTCTTCTTCGCC
GGAAAATATCCAGTCTCACGAATAACAACATTTCGCCGTTGTTAACCCCC
TTTTTCACTAGTTTTGCTTGGGCCGCGCGCGCTATCTTCTCCGCTTCCGC
CCCAATCCCTTCTTACTTTGCTCAGGTTCTGGTGTTGGTAGATGGACACC
AGGCGTTTTTCGGCTCTGTCTCCGATGCCTCCACCGTGTTATCCAGGTAC
ACACAAGCGCGCGTGATCTCAAAACGTTGGTGGATTTTCTGGCGTTTCAG
TGGTCGAGATAGACAGGCGCATCACGTGGTTTCGTGTGGTTGCGTTTGGG
GCAGTACTGGTTGGTTGCAGGCCTTTTGGAGGGTGCGGAAGCGCTGCTGC
AGTATCCACTTCTGTGTTTTATATCTTCTCCCTTGTCGGCAACTGCGCCC
GCGGCTTTCACAGGCGGGTTTACCATGGATGGATTCGACCAATTGATTGA
TTGTTTAATTTTATGTTGCCCGCTCAATTTGTAAATACTACGGATTGATT
GGCCTGTGTATGCGCAAGTCCCGTTCGTGCTGAAGAGAAAATCACTTCCA
AGACAACTATTGTAGGCCAACAGAAAACCATAAATTATGGTTGCAGAGAA
TCGGTAGAAAATACTGAATTGTGACAGAGCCTTTTTGCGGCCGGGCGGGG
CTGCGCACCCCGCACCAATGTGCAGGCGTCTTCCCAGCGGGCCATGCCTG
TAAATACAGGGTCCAGATATGAGCACCTCCCCGTTAATTCAAAATAGTAT
TTGTGGAATGAGGGGCTGGTGTTCAGATTCAAACCCTCTTTTGGTATGAA
GCGATGGGTTGCAGGGTGCACATCTATCATACCGTGCTGCGAGTCCCCGC
CCCCCCTGAAGTCCCTCTCCTCCCAAAACAAGATGCGTTCATGGAACGAG
GTGACAGCTCCTGGTGCTCCATGTAGTATATTTTGTTTTCAAGGGATCCA
TCTATAGCGTATTGTGCACTTCGTGATTCGGGATATGAAGAAGAACTGCT
ATCACGAAGGCACAGAGTAATCAGGACCAAAAATGAAATGTCCCAAAAAC
TATACCCAACATAGTAACATACCAGGAATCAATGTGGTCTGGCCTTATAA
CCTCATGTGCAATTTCCCGGCCTGAAATGCCAATAAAACCGTAAAACAAA
TGGCTATGAGGTGGTCGAGCCAACGTTTAAAAACAAACCTTGAACACGCC
ATTGAGCAGGAATTTGGTCCTGATTACTATTATACTGGTTACTGCTGTGT
TCCTCTGTAAATATATCACCGGTGTGTGGGTTGGCTCGTCTATACTATGG
CTTGGCCGCAACACTCCTCCAAGGCGGCGCCCCACGCCCGCCCGCCCACC
CACCCACTCACCAAAAACGACCCACCCCCGGTAATACTCACCAACGCACC
ATATTATGTTCCTTGGGTCTGTTTTGCGCGACCTTGAATGCATTTTTCCC
CCTCTAAACGCACATCTCCCGCGCTGATCGCCCATCCGAAAACAAACCAG
GCCGGAGATCGGAGTCATACCATCCCCCGGTCAAAACCCGGCAGAGTTCA
TCCTCCTCGCCGCAAAAGCCATCGCCGCAACCGCCACCTCCACCGCCTCC
TGGCGCCAGGAATTTTCTCCGGAACGTTCCTCATCCTTTCGAGAAGTCTC
TTCGGACTTCTCCGAGCCAGAACCCGTTGGCATCGGCGGCATAGAGTACC
TGTACGACGACGAAGGACCAGAAGGGATTAATACTGAGGCGGTAACGCGG
GGGGGGTGGAGAGGAGAAGAAAGAGAGGAACGATCCAGGCGTTCAGGGAA
CGGGGGCGAGGAAGGGGGGGGGTTCACGGGCGGTTTGCGGCGTGCTTGGG
GAGGGGAGGACGCGGCTTATGCCGTTGGGTTCTTGGCGCAGGTAGGGCGC
TAGGGCTCCGTTGTGTTTGTTGGTGCATTGCCAGGGGGCGTGGGGGTGGG
GGTGGTGAGCTGTGGCGGGAGGTCTGTTTGACCAAATGGTGATACAATGG
CCCTAGCCAGGACGTCGCCGTATATTTGTTGCTTTGAATGCTTTTGATAC
ACAGCAAGTGCGTGTTGTGATGCTAGGTGGGCGCTCACACGATTCGACAC
AAACCCTACCCCAAACCTGAAAGCCACTCCTTACCTCAGTCGTAGGTCCG
TAGAGCTCAAACGCGGCTACGCCACACCGGAGTCCAATGGCTAATTTGCG
TGGGAATCACCGTGGACCATAAATATTTCGCCTTTGGCCGGTGAAAAGCT
CCTTTTAACGAATATCAAACCCTCGTGGCGGGGGTTGTTAGGGGCAGCGG
CCCGGAGAGTGTTGTCGCAAATACGTTGGCGTGTTTTTGTTTTCGAGTTG
ATGTTGATGATTCCTTGCTTTGCTCTATTGCCTTCTTTCCGCTTTTACAT
TAGTCGGTGCTTAGTTTTGTTTTAGTACATCTGTGGTTTTCTGGCTTCCT
TATTTTCGCTGTAAACATTGTATCACCACGGGTTTCCCCAACCCCCCTGA
CCCCCCGCCGAACAAGGATACTGGCAGAAATGGTCGAATTGGGCGAGGCT
ATGGTGCTCTGTACCTTCTTTAGATTTGAGAGATGTTTTTGTCAGGGTAC
GCTTCAGGATGTGGGTTATTGTACGCCGACAAAGAGAAATTGCGACTGCA
GGTAAGCTGTTTTATGGATGCCATGGGTTGACCGCAAACGCCGTCCCCGA
AAAGAACAGTGTTGCATGCTTCATCGAAAGGGAATTTGTTTGTATGCGAC
GGTTCCGCTCGGGGGTTTGTTCCGTTCATCCATCTTGCGACGATGTATTG
TACTGGTACGGAGGGCCATAGTAAACAGGTCCAAATTTGTCACAAATGTT
AACTTAGCAAAGCAAAATAGGCTGGAACAGTTGGGTATTCACGGGTCGGT
GTTGTCGGGTAGGCCAGGCCTCGTGTTGTTTCTTGGTCCATGAGATTTTG
GTGTTGTTTGGGTATTCGTGGTCGGAATAGTTGCGTATTCATGGTCGTGA
GATTTCGTCCTGATTTACTTGATTATAGTGTACCTCCGTTACATCTAGAC
ACTCTGGTGATGGTACCATACTGTAATCGGTATCACCGTCACATCATCAC
CGAATGGAGACTCCGTGTTGATTACCCATACCCCACCCTACCCACCCCAC
CCCCATTCCCCCCACCCACCCCCCACCCAACCCCACCACCACCCCCCCCC
CCCTTGCCGCCTCTCTTTGGTATTGAACGGTTCTGTTGCTTGTACAGTTA
TCGGTTGTGTGGAGCCGTGCGTGGACGGTGCAGGCTCGAAGAAAGGATTC
TCTGTGGGCGTTGTTCGTGAAGAACACCTTCGTGGGGATATTGACGACAG
CTGTTTTCTGGCAGGAAGCCGCCGTC
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Coding sequence (CDS) from alignment at S-dermatodea_contig11873:588..7113-

>mRNA_S-dermatodea_contig11873.1177.1 ID=mRNA_S-dermatodea_contig11873.1177.1|Name=mRNA_S-dermatodea_contig11873.1177.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2304bp|location=Sequence derived from alignment at S-dermatodea_contig11873:588..7113- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGTGCTTCGGGCGCTGGAAAATCCACGTTTCTAGACCTCTTGGCGGGCAG
AAAAGCCGACGGAGAGTGCGCGGGGCAGATATTCCTGGCCGGGGACGCGG
GTCGGGGGGGGGGGAGGGGGAGGGCATCCGTGTACGTGACGCAGGCAGAT
TTCCACGTGGCCGAGCTTACGGTGCGAGAGAGCCTCGCGTTTGCCGTGCG
GCTGGGTATGGGAGGGCATGGTGTGAGGGTGCTTCGGGCGCTGGAAAATC
CACGTTTCTAGACCTCTTGGCGGGCAGAAAAGCCGACGGAGAGTGCGCGG
GGCAGATATTCCTGGCCGGGGACGCGGGTCGGGGGGGGGGGAGGGGGAGG
GCATCCGTGTACGTGACGCAGGCAGATTTCCACGTGGCCGAGCTTACGGT
GCGAGAGAGCCTCGCGTTTGCCGTGCGGCTGGGTATGGGAGGGCATGGTG
TGAGCGATGAAGACCGCCGAGTCCGAGTGGAGGAGCTGCTTGGCGTCCTC
GGCCTTGAGTCTTGCGGCGATGTACGCGTCGGTAACCCTATAGAGCGGGG
CATCAGCGGCGGCCAGGCGAGGCGGCTCTCGGTGGGTGTGGGCGTCGCGG
ATCTGGAGAGCGTTCGACTGCTGCTGCTGGACGAGCCCACGACGCGATGA
AGACCGCCGAGTCCGAGTGGAGGAGCTGCTTGGCGTCCTCGGCCTTGAGT
CTTGCGGCGATGTACGCGTCGGTAACCCTATAGAGCGGGGCATCAGCGGC
GGCCAGGCGAGGCGGCTCTCGGTGGGTGTGGGCGTCGCGGATCTGGAGAG
CGTTCGACTGCTGCTGCTGGACGAGCCCACGACGGGGCTGGACTCGTCCT
CTGCCACCGAGGTGTTGCTTCTGGCGAGGCGTTTGGCGACGAGGGGGGGC
AGGCGAGCCGTGGTTGCCTCGGTGCACCAGCCGTCTCCGGAGATGTTCGC
GCTCTTCGACAAGGCGAGCCGACGATCTGGGCTGGACTCGTCCTCTGCCA
CCGAGGTGTTGCTTCTGGCGAGGCGTTTGGCGACGAGGGGGGGCAGGCGA
GCCGTGGTTGCCTCGGTGCACCAGCCGTCTCCGGAGATGTTCGCGCTCTT
CGACAAGGCGAGCCGACGATCTGTTCTGGTGTTGGTAGATGGACACCAGG
CGTTTTTCGGCTCTGTCTCCGATGCCTCCACCGTGTTATCCAGGTTCTGG
TGTTGGTAGATGGACACCAGGCGTTTTTCGGCTCTGTCTCCGATGCCTCC
ACCGTGTTATCCAGGCCGGAGATCGGAGTCATACCATCCCCCGGTCAAAA
CCCGGCAGAGTTCATCCTCCTCGCCGCAAAAGCCATCGCCGCAACCGCCA
CCTCCACCGCCTCCTGGCGCCAGGAATTTTCTCCGGAACGTTCCTCATCC
TTTCGAGAAGTCTCTTCGGACTTCTCCGAGCCAGAACCCGTTGGCATCGG
CGGCATAGAGTACCTGTACGACGACGAAGGACCAGAAGGGATTAATACTG
AGGCGGTAACGCGGGGGGGGTGGAGAGGAGAAGAAAGAGAGGAACGATCC
AGGCGTTCAGGGAACGGGGGCGAGGAAGGGGGGGGGTTCACGGGCGGTTT
GCGGCGTGCTTGGGGAGGGGAGGACGCGGCTTATGCCGTTGGGTTCTTGG
CGCAGGCCGGAGATCGGAGTCATACCATCCCCCGGTCAAAACCCGGCAGA
GTTCATCCTCCTCGCCGCAAAAGCCATCGCCGCAACCGCCACCTCCACCG
CCTCCTGGCGCCAGGAATTTTCTCCGGAACGTTCCTCATCCTTTCGAGAA
GTCTCTTCGGACTTCTCCGAGCCAGAACCCGTTGGCATCGGCGGCATAGA
GTACCTGTACGACGACGAAGGACCAGAAGGGATTAATACTGAGGCGGTAA
CGCGGGGGGGGTGGAGAGGAGAAGAAAGAGAGGAACGATCCAGGCGTTCA
GGGAACGGGGGCGAGGAAGGGGGGGGGTTCACGGGCGGTTTGCGGCGTGC
TTGGGGAGGGGAGGACGCGGCTTATGCCGTTGGGTTCTTGGCGCAGTTAT
CGGTTGTGTGGAGCCGTGCGTGGACGGTGCAGGCTCGAAGAAAGGATTCT
CTGTGGGCGTTGTTCGTGAAGAACACCTTCGTGGGGATATTGACGACAGC
TGTTTTCTGGCAGGAAGCCGCCGTCTTATCGGTTGTGTGGAGCCGTGCGT
GGACGGTGCAGGCTCGAAGAAAGGATTCTCTGTGGGCGTTGTTCGTGAAG
AACACCTTCGTGGGGATATTGACGACAGCTGTTTTCTGGCAGGAAGCCGC
CGTC
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