mRNA_S-dermatodea_contig11850.1158.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11850.1158.1
Unique NamemRNA_S-dermatodea_contig11850.1158.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11850.1158.1 vs. uniprot
Match: A0A6H5JGW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGW6_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 4.960e-11
Identity = 37/65 (56.92%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:    1 MRPEAALELLRGSVARSGGLIHPLATPTDPVCRCVRLLCRRAPAFAIPAVAAPDDSASGTDDVSG 195
            +RPE+ALELLRG V RSGG++H L  P D  CR VRLLCRRAP + +P      DS  GT  V+G
Sbjct:  362 LRPESALELLRGCVVRSGGVVHFLHAPADAACRGVRLLCRRAPEYVVPL---STDSPPGTTPVTG 423
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11850.1158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JGW6_9PHAE4.960e-1156.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11850contigS-dermatodea_contig11850:5366..5698 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size334
Cds size333
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924219.616644-CDS-S-dermatodea_contig11850:5365..56981622924219.616644-CDS-S-dermatodea_contig11850:5365..5698Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11850 5366..5698 +
1694079101.9617722-CDS-S-dermatodea_contig11850:5365..56981694079101.9617722-CDS-S-dermatodea_contig11850:5365..5698Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11850 5366..5698 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11850.1158.1prot_S-dermatodea_contig11850.1158.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11850 5366..5698 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11850.1158.1

>prot_S-dermatodea_contig11850.1158.1 ID=prot_S-dermatodea_contig11850.1158.1|Name=mRNA_S-dermatodea_contig11850.1158.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=111bp
MRPEAALELLRGSVARSGGLIHPLATPTDPVCRCVRLLCRRAPAFAIPAV
AAPDDSASGTDDVSGKKRSKDKSSGSRRPRDAGGRESRGGGGGGYARRQA
KGGERRDVETR
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mRNA from alignment at S-dermatodea_contig11850:5366..5698+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11850.1158.1 ID=mRNA_S-dermatodea_contig11850.1158.1|Name=mRNA_S-dermatodea_contig11850.1158.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=333bp|location=Sequence derived from alignment at S-dermatodea_contig11850:5366..5698+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGACCGGAGGCCGCCCTCGAGCTCCTCCGAGGCTCTGTCGCACGATC
GGGGGGATTAATCCACCCCCTGGCAACGCCCACGGATCCTGTCTGCCGAT
GCGTTCGTCTCCTCTGCAGACGGGCACCGGCGTTCGCCATCCCCGCCGTC
GCCGCCCCTGACGATAGCGCTAGCGGTACCGATGACGTCAGCGGCAAGAA
AAGAAGCAAAGACAAATCGTCGGGGTCTCGTCGACCCCGGGACGCAGGAG
GTCGAGAAAGCCGCGGGGGCGGAGGTGGGGGATACGCTAGGCGACAGGCA
AAGGGTGGGGAACGCAGGGATGTGGAAACTCGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig11850:5366..5698+

>mRNA_S-dermatodea_contig11850.1158.1 ID=mRNA_S-dermatodea_contig11850.1158.1|Name=mRNA_S-dermatodea_contig11850.1158.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at S-dermatodea_contig11850:5366..5698+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGACCGGAGGCCGCCCTCGAGCTCCTCCGAGGCTCTGTCGCACGATC
GGGGGGATTAATCCACCCCCTGGCAACGCCCACGGATCCTGTCTGCCGAT
GCGTTCGTCTCCTCTGCAGACGGGCACCGGCGTTCGCCATCCCCGCCGTC
GCCGCCCCTGACGATAGCGCTAGCGGTACCGATGACGTCAGCGGCAAGAA
AAGAAGCAAAGACAAATCGTCGGGGTCTCGTCGACCCCGGGACGCAGGAG
GTCGAGAAAGCCGCGGGGGCGGAGGTGGGGGATACGCTAGGCGACAGGCA
AAGGGTGGGGAACGCAGGGATGTGGAAACTCGAATGCGACCGGAGGCCGC
CCTCGAGCTCCTCCGAGGCTCTGTCGCACGATCGGGGGGATTAATCCACC
CCCTGGCAACGCCCACGGATCCTGTCTGCCGATGCGTTCGTCTCCTCTGC
AGACGGGCACCGGCGTTCGCCATCCCCGCCGTCGCCGCCCCTGACGATAG
CGCTAGCGGTACCGATGACGTCAGCGGCAAGAAAAGAAGCAAAGACAAAT
CGTCGGGGTCTCGTCGACCCCGGGACGCAGGAGGTCGAGAAAGCCGCGGG
GGCGGAGGTGGGGGATACGCTAGGCGACAGGCAAAGGGTGGGGAACGCAG
GGATGTGGAAACTCGA
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