mRNA_S-dermatodea_contig11806.1146.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11806.1146.1
Unique NamemRNA_S-dermatodea_contig11806.1146.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11806.1146.1 vs. uniprot
Match: D8LJ02_ECTSI (Polyadenylate binding protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ02_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 6.050e-39
Identity = 68/86 (79.07%), Postives = 74/86 (86.05%), Query Frame = 1 
Query:    1 MAELALCTIHVKGVPAKTTEADIRDACSQYGNITEVAISEGKYFCFVEFAKEGQAQVAAETGGFDVCGQHATAEMRKPRCGRRERA 258
            MAELA CTI++KG+    TEAD+RDACSQYGNIT+VAI EGK FCFVEFA+E QAQ AAETGGFDVCG HAT EMRKPR GRRERA
Sbjct:    1 MAELASCTIYIKGIATTATEADVRDACSQYGNITDVAIPEGKDFCFVEFAEEAQAQAAAETGGFDVCGAHATVEMRKPRRGRRERA 86
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BLAST of mRNA_S-dermatodea_contig11806.1146.1 vs. uniprot
Match: A0A6N6PEZ8_9BACT (RNA-binding protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A6N6PEZ8_9BACT)

HSP 1 Score: 49.7 bits (117), Expect = 1.120e-5
Identity = 28/78 (35.90%), Postives = 47/78 (60.26%), Query Frame = 1 
Query:   25 IHVKGVPAKTTEADIRDACSQYGNITEVAISEGKY------FCFVEFAKEGQAQVAAET-GGFDVCGQHATAEMRKPR 237
            ++V  +  KT+EAD+R+A SQ+G +T+V I+  +       F FV FA E ++++A E   GFD+ G+  T    +P+
Sbjct:    5 LYVGNMSFKTSEADLRNAFSQFGTVTDVYIANDRETGRPRGFAFVTFATEEESKLATEKLNGFDLDGRQLTVNEARPK 82
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11806.1146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJ02_ECTSI6.050e-3979.07Polyadenylate binding protein n=2 Tax=Ectocarpus T... [more]
A0A6N6PEZ8_9BACT1.120e-535.90RNA-binding protein n=1 Tax=Verrucomicrobia bacter... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11806contigS-dermatodea_contig11806:5189..5446 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.0
Seed ortholog evalue2.7e-31
Seed eggNOG ortholog2880.D8LJ02
KEGG koko:K03102,ko:K14411,ko:K15502
KEGG Pathwayko03015,ko04320,map03015,map04320
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006355,GO:0006366,GO:0006396,GO:0006397,GO:0006401,GO:0006417,GO:0006725,GO:0006807,GO:0007623,GO:0008150,GO:0008152,GO:0008380,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009299,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0010638,GO:0016070,GO:0016071,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031974,GO:0031981,GO:0032204,GO:0032206,GO:0032268,GO:0032270,GO:0032501,GO:0032774,GO:0032991,GO:0033043,GO:0033044,GO:0034248,GO:0034250,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0042162,GO:0042752,GO:0042789,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043487,GO:0043488,GO:0043565,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045893,GO:0045935,GO:0046483,GO:0046700,GO:0048511,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0051052,GO:0051054,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051338,GO:0051347,GO:0051972,GO:0051973,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097167,GO:0097659,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902680,GO:1903311,GO:1903506,GO:1903508,GO:1904353,GO:1904355,GO:1905661,GO:1905663,GO:1990904,GO:2000112,GO:2000278,GO:2000573,GO:2001141,GO:2001252
EggNOG free text desc.poly(U) RNA binding
EggNOG OGsKOG4205@1,KOG4205@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03019,ko03041,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size258
Cds size258
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924218.9212625-CDS-S-dermatodea_contig11806:5188..54461622924218.9212625-CDS-S-dermatodea_contig11806:5188..5446Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11806 5189..5446 +
1694079101.3792505-CDS-S-dermatodea_contig11806:5188..54461694079101.3792505-CDS-S-dermatodea_contig11806:5188..5446Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11806 5189..5446 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11806.1146.1prot_S-dermatodea_contig11806.1146.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11806 5189..5446 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11806.1146.1

>prot_S-dermatodea_contig11806.1146.1 ID=prot_S-dermatodea_contig11806.1146.1|Name=mRNA_S-dermatodea_contig11806.1146.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=86bp
MAELALCTIHVKGVPAKTTEADIRDACSQYGNITEVAISEGKYFCFVEFA
KEGQAQVAAETGGFDVCGQHATAEMRKPRCGRRERA
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mRNA from alignment at S-dermatodea_contig11806:5189..5446+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11806.1146.1 ID=mRNA_S-dermatodea_contig11806.1146.1|Name=mRNA_S-dermatodea_contig11806.1146.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=258bp|location=Sequence derived from alignment at S-dermatodea_contig11806:5189..5446+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGGAGCTCGCATTGTGCACGATCCACGTCAAGGGCGTTCCCGCGAA
AACCACGGAGGCGGACATCCGCGACGCCTGCTCGCAGTACGGCAACATCA
CCGAGGTGGCAATTTCGGAGGGCAAATATTTCTGTTTCGTCGAGTTCGCC
AAAGAAGGACAGGCCCAGGTCGCCGCGGAGACGGGAGGATTCGATGTGTG
CGGCCAGCACGCGACGGCGGAGATGAGGAAGCCTCGCTGCGGTCGCAGGG
AACGTGCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11806:5189..5446+

>mRNA_S-dermatodea_contig11806.1146.1 ID=mRNA_S-dermatodea_contig11806.1146.1|Name=mRNA_S-dermatodea_contig11806.1146.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at S-dermatodea_contig11806:5189..5446+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGGAGCTCGCATTGTGCACGATCCACGTCAAGGGCGTTCCCGCGAA
AACCACGGAGGCGGACATCCGCGACGCCTGCTCGCAGTACGGCAACATCA
CCGAGGTGGCAATTTCGGAGGGCAAATATTTCTGTTTCGTCGAGTTCGCC
AAAGAAGGACAGGCCCAGGTCGCCGCGGAGACGGGAGGATTCGATGTGTG
CGGCCAGCACGCGACGGCGGAGATGAGGAAGCCTCGCTGCGGTCGCAGGG
AACGTGCGATGGCGGAGCTCGCATTGTGCACGATCCACGTCAAGGGCGTT
CCCGCGAAAACCACGGAGGCGGACATCCGCGACGCCTGCTCGCAGTACGG
CAACATCACCGAGGTGGCAATTTCGGAGGGCAAATATTTCTGTTTCGTCG
AGTTCGCCAAAGAAGGACAGGCCCAGGTCGCCGCGGAGACGGGAGGATTC
GATGTGTGCGGCCAGCACGCGACGGCGGAGATGAGGAAGCCTCGCTGCGG
TCGCAGGGAACGTGCG
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