prot_S-dermatodea_contig11806.1146.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig11806.1146.1
Unique Nameprot_S-dermatodea_contig11806.1146.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length86
Homology
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BLAST of mRNA_S-dermatodea_contig11806.1146.1 vs. uniprot
Match: D8LJ02_ECTSI (Polyadenylate binding protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ02_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 6.050e-39
Identity = 68/86 (79.07%), Postives = 74/86 (86.05%), Query Frame = 0 
Query:    1 MAELALCTIHVKGVPAKTTEADIRDACSQYGNITEVAISEGKYFCFVEFAKEGQAQVAAETGGFDVCGQHATAEMRKPRCGRRERA 86
            MAELA CTI++KG+    TEAD+RDACSQYGNIT+VAI EGK FCFVEFA+E QAQ AAETGGFDVCG HAT EMRKPR GRRERA
Sbjct:    1 MAELASCTIYIKGIATTATEADVRDACSQYGNITDVAIPEGKDFCFVEFAEEAQAQAAAETGGFDVCGAHATVEMRKPRRGRRERA 86
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BLAST of mRNA_S-dermatodea_contig11806.1146.1 vs. uniprot
Match: A0A6N6PEZ8_9BACT (RNA-binding protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A6N6PEZ8_9BACT)

HSP 1 Score: 49.7 bits (117), Expect = 1.120e-5
Identity = 28/78 (35.90%), Postives = 47/78 (60.26%), Query Frame = 0 
Query:    9 IHVKGVPAKTTEADIRDACSQYGNITEVAISEGKY------FCFVEFAKEGQAQVAAET-GGFDVCGQHATAEMRKPR 79
            ++V  +  KT+EAD+R+A SQ+G +T+V I+  +       F FV FA E ++++A E   GFD+ G+  T    +P+
Sbjct:    5 LYVGNMSFKTSEADLRNAFSQFGTVTDVYIANDRETGRPRGFAFVTFATEEESKLATEKLNGFDLDGRQLTVNEARPK 82
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11806.1146.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJ02_ECTSI6.050e-3979.07Polyadenylate binding protein n=2 Tax=Ectocarpus T... [more]
A0A6N6PEZ8_9BACT1.120e-535.90RNA-binding protein n=1 Tax=Verrucomicrobia bacter... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 8..74
e-value: 3.7E-12
score: 56.4
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 10..61
e-value: 4.2E-10
score: 39.3
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 7..78
score: 10.855
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 3..85
e-value: 3.2E-15
score: 58.1
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 7..83

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11806contigS-dermatodea_contig11806:5189..5446 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11806.1146.1mRNA_S-dermatodea_contig11806.1146.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig11806 5189..5446 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig11806.1146.1 ID=prot_S-dermatodea_contig11806.1146.1|Name=mRNA_S-dermatodea_contig11806.1146.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=86bp
MAELALCTIHVKGVPAKTTEADIRDACSQYGNITEVAISEGKYFCFVEFA
KEGQAQVAAETGGFDVCGQHATAEMRKPRCGRRERA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf