mRNA_S-dermatodea_contig11773.1125.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11773.1125.1
Unique NamemRNA_S-dermatodea_contig11773.1125.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11773.1125.1 vs. uniprot
Match: D8LGF7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGF7_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 4.380e-24
Identity = 60/100 (60.00%), Postives = 69/100 (69.00%), Query Frame = 1 
Query:   13 ITEIPGGSRRCLSLPMPRLRVRPEGKSAGQD--ELRSPLALRPLFQWEKSLIKHLQRHLSLRWSTSAGEAAAATGTPAASPGGALVDDSGVAGTRGNGGG 306
            + EIP GSRRCLSL +PRLRVRPEG+S+G+D  E RSPL+LRPLF WEKSL  H+   LSLRWST+  EA AA     AS GG + D     GT   GGG
Sbjct:  632 VVEIPRGSRRCLSLRVPRLRVRPEGRSSGRDGDEPRSPLSLRPLFDWEKSLASHILEELSLRWSTAREEALAAASLGTASGGGVVPDPFTGEGTASAGGG 731
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BLAST of mRNA_S-dermatodea_contig11773.1125.1 vs. uniprot
Match: A0A6H5J9H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9H9_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 2.910e-23
Identity = 54/85 (63.53%), Postives = 63/85 (74.12%), Query Frame = 1 
Query:   13 ITEIPGGSRRCLSLPMPRLRVRPEGKSAG--QDELRSPLALRPLFQWEKSLIKHLQRHLSLRWSTSAGEAAAATGTPAASPGGAL 261
            + EIPGGSRRCLSL +PRLRVRPEG+S G  +DE RSPL+LRPLF WEKSL  H+   LSLRWST+  EA AA     A+ GG +
Sbjct: 1381 VVEIPGGSRRCLSLRVPRLRVRPEGRSLGRDEDEPRSPLSLRPLFDWEKSLASHILEELSLRWSTAREEALAAASLGTAAGGGVV 1465
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11773.1125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGF7_ECTSI4.380e-2460.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9H9_9PHAE2.910e-2363.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11773contigS-dermatodea_contig11773:2666..4280 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-16_003870.1
Exons2
Model size322
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924217.1371927-CDS-S-dermatodea_contig11773:2665..27551622924217.1371927-CDS-S-dermatodea_contig11773:2665..2755Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11773 2666..2755 +
1694079100.0638611-CDS-S-dermatodea_contig11773:2665..27551694079100.0638611-CDS-S-dermatodea_contig11773:2665..2755Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11773 2666..2755 +
1622924217.147298-CDS-S-dermatodea_contig11773:4050..42781622924217.147298-CDS-S-dermatodea_contig11773:4050..4278Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11773 4051..4278 +
1694079100.0756326-CDS-S-dermatodea_contig11773:4050..42781694079100.0756326-CDS-S-dermatodea_contig11773:4050..4278Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11773 4051..4278 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11773.1125.1prot_S-dermatodea_contig11773.1125.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11773 2666..4278 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11773.1125.1

>prot_S-dermatodea_contig11773.1125.1 ID=prot_S-dermatodea_contig11773.1125.1|Name=mRNA_S-dermatodea_contig11773.1125.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=106bp
GGSGITEIPGGSRRCLSLPMPRLRVRPEGKSAGQDELRSPLALRPLFQWE
KSLIKHLQRHLSLRWSTSAGEAAAATGTPAASPGGALVDDSGVAGTRGNG
GGLWPS
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mRNA from alignment at S-dermatodea_contig11773:2666..4280+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11773.1125.1 ID=mRNA_S-dermatodea_contig11773.1125.1|Name=mRNA_S-dermatodea_contig11773.1125.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1615bp|location=Sequence derived from alignment at S-dermatodea_contig11773:2666..4280+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCGGGAGCGGGATAACCGAGATCCCCGGGGGCTCTAGAAGATGCTTGTC
CCTGCCTATGCCGCGACTGAGAGTTAGGCCGGAGGGAAAGGTTCGTGGTG
TGGTGTAGTGGTGAGGGGGTGGAAAGCAACAGAACAATTAGTACGACAAA
AAATGTGTGTTTAGTGTAGAGACAAAGTCAATCTTCTTGGCTCACAAAAG
CATATCGAATGTACATCACCAGGGTATCGCTCAGGACAAATTAGATGCTA
GTACATTAGGGGGTCAGGCGCTCCGGGCGGCGTGCGGGTTATATCTCTTG
TCATGTCTGGCTACCAGCTTTTTTGTTCGGTGTAGGGATGCTGGATTTCA
ATTGCTCTTGTGCCTTCATGTGACCACGAGCGGAAAGATCATCCACTAAA
AAAAAAAAAAAAATGGCGGGCCGGTCGGTTGTAAGTGTGAAAATCAATAA
ATACAAAATCAATCAATCAACCATAACCCTATAAAATATTATCATACACG
CCATGAAACCATAGCATCGCGCACAACACAAGCCTCCGTAGGTGTACAGT
AGCTTGGACCATCTTTTCCCTTTAAAAAAAAGTGGGACCCCAACGCTCGC
TTTGTGTCTTAAAAATGTGTTACTCTTTAGCGGGTGGTGATGGTGGTGGG
GTAGTGGTGTAAGATGTGTGTTGTTGTGAGGTCTATCGGCGGTTGGATGT
CGGTGTGTGTGTTGGTTTTTGTGCTTCGCCTGTGCGATGCAAAATGGGGG
AGTGGTCTTACGTTTGGTGTAAATACCGGTTTCGATCCCTTGGTGACTTT
TTTTTCGTGTTTTATCGATTTCCTCGCGAAAATGAACCCTCGCTGCTCTA
TACAATGCTTCATCATATGCATGCATGCGTTCTACGTACCAGTATCACAC
GTTGTCTCAATGCCCGTGATGGCGTATAATTGTGTGCTCTCGAGGTTTGC
CGTGTCGTTGTGTGAGACAACGTTTATCGCGTGTTGCTGTTGATCGCCTC
TTCCTGTTAAGGAAACTGAAGCTCGCTGTGGCTGCGGCTTTACAGAGTCG
GCACGTGTCTGGCGTGTATCAAGGCCTGGTGCTCGGCTCGGCGAACGCGA
TTTATGTCGCCCTCCCGCACCACACACCCCTGCCGCAGCATGATCGATCG
CGGTGGACTTGCACCGACCTATCGTGACCCCTGAAAACGCACAATGCAAA
CTTTGCTACATGACTCAGCCGCCGATCAGCAAAACGTTCATGGGTTCCCG
TCACCATCACTCTTCCCGTTGCTTGTACAACGCTACACCTTACACCCCCC
CCCCCTACCTACCCAACCCACCCACGCATCCACCCACCCCCACCCACCTC
CACTCACCCCACCCCCCCCCTCGCACTTGTGTCAGAGCGCGGGGCAGGAC
GAGCTCCGCTCTCCACTCGCCCTCCGCCCACTCTTCCAGTGGGAAAAATC
GCTCATCAAACACCTGCAGCGGCACCTGTCCCTCCGCTGGTCCACCTCGG
CGGGGGAAGCCGCGGCAGCTACGGGAACCCCCGCGGCTTCACCCGGTGGA
GCGTTAGTCGACGACAGTGGGGTAGCAGGGACGAGGGGCAACGGTGGAGG
CCTGTGGCCCTCGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11773:2666..4280+

>mRNA_S-dermatodea_contig11773.1125.1 ID=mRNA_S-dermatodea_contig11773.1125.1|Name=mRNA_S-dermatodea_contig11773.1125.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at S-dermatodea_contig11773:2666..4280+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCGGGAGCGGGATAACCGAGATCCCCGGGGGCTCTAGAAGATGCTTGTC
CCTGCCTATGCCGCGACTGAGAGTTAGGCCGGAGGGAAAGGGCGGGAGCG
GGATAACCGAGATCCCCGGGGGCTCTAGAAGATGCTTGTCCCTGCCTATG
CCGCGACTGAGAGTTAGGCCGGAGGGAAAGAGCGCGGGGCAGGACGAGCT
CCGCTCTCCACTCGCCCTCCGCCCACTCTTCCAGTGGGAAAAATCGCTCA
TCAAACACCTGCAGCGGCACCTGTCCCTCCGCTGGTCCACCTCGGCGGGG
GAAGCCGCGGCAGCTACGGGAACCCCCGCGGCTTCACCCGGTGGAGCGTT
AGTCGACGACAGTGGGGTAGCAGGGACGAGGGGCAACGGTGGAGGCCTGT
GGCCCTCGAGCGCGGGGCAGGACGAGCTCCGCTCTCCACTCGCCCTCCGC
CCACTCTTCCAGTGGGAAAAATCGCTCATCAAACACCTGCAGCGGCACCT
GTCCCTCCGCTGGTCCACCTCGGCGGGGGAAGCCGCGGCAGCTACGGGAA
CCCCCGCGGCTTCACCCGGTGGAGCGTTAGTCGACGACAGTGGGGTAGCA
GGGACGAGGGGCAACGGTGGAGGCCTGTGGCCCTCG
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