mRNA_S-dermatodea_contig11748.1104.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11748.1104.1
Unique NamemRNA_S-dermatodea_contig11748.1104.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11748.1104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11748contigS-dermatodea_contig11748:38..638 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size602
Cds size333
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924215.9228837-UTR-S-dermatodea_contig11748:37..3051622924215.9228837-UTR-S-dermatodea_contig11748:37..305Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11748 38..305 +
1694079099.25001-UTR-S-dermatodea_contig11748:37..3051694079099.25001-UTR-S-dermatodea_contig11748:37..305Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11748 38..305 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924215.9341726-CDS-S-dermatodea_contig11748:305..6381622924215.9341726-CDS-S-dermatodea_contig11748:305..638Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11748 306..638 +
1694079099.2633758-CDS-S-dermatodea_contig11748:305..6381694079099.2633758-CDS-S-dermatodea_contig11748:305..638Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11748 306..638 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11748.1104.1prot_S-dermatodea_contig11748.1104.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11748 306..638 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11748.1104.1

>prot_S-dermatodea_contig11748.1104.1 ID=prot_S-dermatodea_contig11748.1104.1|Name=mRNA_S-dermatodea_contig11748.1104.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=111bp
MNLAVCVPDEGMRPLCPSNMSRSVSMTTPYSSNTARRLHTQALIAGQSTG
NKHTQTIGRRRGGAGNVEEMVTTESVYAGGGFHPTQCIANGLGRIDLSAS
SVALLDPPPSP
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mRNA from alignment at S-dermatodea_contig11748:38..638+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11748.1104.1 ID=mRNA_S-dermatodea_contig11748.1104.1|Name=mRNA_S-dermatodea_contig11748.1104.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=601bp|location=Sequence derived from alignment at S-dermatodea_contig11748:38..638+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGCCGGCGGGGAAGGAGGAGGTGGGCGATCAGCCTCAAGATGACCATGG
TGATTGACGCGTGGATATCCGCAAGTGCAGTGCGTAGCTCCGTGCGCGTC
GCGCGCGCCTTAGTTTTTCGCTTTTGGTGGGCACCGTCTAGCTGCTAGCT
GCTAGCTGCGGTGCGCCCCGTTTTTACAATACGATGTCTTTTAAGTCCAA
GAGACCGCATTTTATTTTTTGGTAAAAGCGAAACACGTTTTGGGACGGTA
CATGTGTTCGAGGGCTGAATGAATCTCGCTGTGTGTGTCCCAGACGAGGG
CATGCGCCCGTTATGTCCTTCTAACATGTCTAGGAGCGTTTCGATGACAA
CACCCTACAGCAGTAATACCGCCAGACGCCTCCACACGCAAGCATTAATA
GCAGGGCAAAGCACGGGAAACAAACACACACAAACAATCGGGCGGCGGAG
AGGGGGCGCCGGCAACGTAGAAGAAATGGTCACCACAGAGTCTGTCTATG
CCGGGGGCGGTTTTCACCCCACCCAATGCATCGCGAACGGGTTGGGACGC
ATAGACCTAAGCGCATCGTCTGTCGCCCTCCTGGACCCCCCCCCCTCTCC
A
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Coding sequence (CDS) from alignment at S-dermatodea_contig11748:38..638+

>mRNA_S-dermatodea_contig11748.1104.1 ID=mRNA_S-dermatodea_contig11748.1104.1|Name=mRNA_S-dermatodea_contig11748.1104.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at S-dermatodea_contig11748:38..638+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAATCTCGCTGTGTGTGTCCCAGACGAGGGCATGCGCCCGTTATGTCC
TTCTAACATGTCTAGGAGCGTTTCGATGACAACACCCTACAGCAGTAATA
CCGCCAGACGCCTCCACACGCAAGCATTAATAGCAGGGCAAAGCACGGGA
AACAAACACACACAAACAATCGGGCGGCGGAGAGGGGGCGCCGGCAACGT
AGAAGAAATGGTCACCACAGAGTCTGTCTATGCCGGGGGCGGTTTTCACC
CCACCCAATGCATCGCGAACGGGTTGGGACGCATAGACCTAAGCGCATCG
TCTGTCGCCCTCCTGGACCCCCCCCCCTCTCCAATGAATCTCGCTGTGTG
TGTCCCAGACGAGGGCATGCGCCCGTTATGTCCTTCTAACATGTCTAGGA
GCGTTTCGATGACAACACCCTACAGCAGTAATACCGCCAGACGCCTCCAC
ACGCAAGCATTAATAGCAGGGCAAAGCACGGGAAACAAACACACACAAAC
AATCGGGCGGCGGAGAGGGGGCGCCGGCAACGTAGAAGAAATGGTCACCA
CAGAGTCTGTCTATGCCGGGGGCGGTTTTCACCCCACCCAATGCATCGCG
AACGGGTTGGGACGCATAGACCTAAGCGCATCGTCTGTCGCCCTCCTGGA
CCCCCCCCCCTCTCCA
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