mRNA_S-dermatodea_contig11735.1102.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig11735.1102.1 vs. uniprot
Match: D7G7Q4_ECTSI (Dihydrouridine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q4_ECTSI) HSP 1 Score: 215 bits (547), Expect = 1.370e-62 Identity = 107/155 (69.03%), Postives = 121/155 (78.06%), Query Frame = 1
Query: 1 LETVHGRTARQAKTAQGVANWDIIGKVKRTVSIPVVANGGVETRADAEGLLEATGADAVMSSEGLLEDPSLFDRELTPMSQLQGVEVAHRILSLAAEYMELAGRFPTPMVSIKGHLFKMLYRLLDFHHDLRDRLAYYEADQAEADAVVREMCRRY 465
L TVHGRT KT QG A+WDII KVK V IPVVANGG+ET ADAE LLE TGADAVMSSEGLLE+P+LFD +L PM +LQG+EVAHRILS EYMEL R+P PM+SIKGHLFKMLYRLL+ HHDLR RL +Y+ D EAD +V E R +
Sbjct: 250 LLTVHGRTVSSQKTKQGAADWDIIRKVKEVVDIPVVANGGIETGADAERLLEETGADAVMSSEGLLENPALFDSDLIPMEELQGLEVAHRILSFTTEYMELVKRYPAPMISIKGHLFKMLYRLLECHHDLRARLGHYQCDAIEADVIVHEASRTH 404
BLAST of mRNA_S-dermatodea_contig11735.1102.1 vs. uniprot
Match: A0A6H5JD10_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD10_9PHAE) HSP 1 Score: 192 bits (489), Expect = 3.950e-51 Identity = 105/188 (55.85%), Postives = 119/188 (63.30%), Query Frame = 1
Query: 1 LETVHGRTARQAKTAQGVANWDIIGKVKRTVSIPVVANGGVETRADAEGLLEATGADAVMSSEGLLEDPSLFDRELTPMSQLQGVEV---------------------------------AHRILSLAAEYMELAGRFPTPMVSIKGHLFKMLYRLLDFHHDLRDRLAYYEADQAEADAVVREMCRRY 465
L TVHGRT KT QG ANWDII KVK IPVVANGG+ET ADAE LLE TGADAVMSSEGLLE+P+LFDR+L P+ +LQGVEV AHRILS EYMEL +P PM+SIKGHLFKMLYRLL+ HHDLR RL +Y D EAD ++ R++
Sbjct: 250 LLTVHGRTVSSQKTKQGAANWDIIRKVKEVAGIPVVANGGIETGADAERLLEETGADAVMSSEGLLENPALFDRDLIPIEELQGVEVRRVSSFSCYSARRTPRMFFTCLTINAGLPGPQVAHRILSFTTEYMELVKLYPAPMISIKGHLFKMLYRLLECHHDLRARLGHYHCDAMEADVIMWIDARKF 437
BLAST of mRNA_S-dermatodea_contig11735.1102.1 vs. uniprot
Match: A0A836CKE0_9STRA (tRNA-dihydrouridine synthase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKE0_9STRA) HSP 1 Score: 144 bits (363), Expect = 4.690e-37 Identity = 77/136 (56.62%), Postives = 96/136 (70.59%), Query Frame = 1
Query: 1 LETVHGRTARQAKTAQGVANWDIIGKVKRTVSIPVVANGGVETRADAEGLLEATGADAVMSSEGLLEDPSLFDRELTPMSQLQGVEVAHRILSLAAEYMELAGRFPTPMVS--IKGHLFKMLYRLLDFHHDLRDRL 402
L TVHGRT R AKT G A+W II +VK + IPVVANGG+ET ADAE L TGADA+MSSE LLEDP+LFDR L + ++ G +A R L+LA EY++L +P + + ++ HLFKML+RLL H DLR RL
Sbjct: 164 LITVHGRTVRSAKTDNGPADWSIIREVKAALRIPVVANGGIETFADAERCLALTGADAIMSSEALLEDPALFDRSLPGLHEVSGAALAQRQLALAGEYLQLVQLYPPAIGAGPVRAHLFKMLHRLLGCHTDLRGRL 299
BLAST of mRNA_S-dermatodea_contig11735.1102.1 vs. uniprot
Match: M4BQW3_HYAAE (Dus domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BQW3_HYAAE) HSP 1 Score: 127 bits (319), Expect = 7.760e-31 Identity = 85/187 (45.45%), Postives = 105/187 (56.15%), Query Frame = 1
Query: 1 LETVHGRTARQAKTAQGVANWDIIGKVKRTVSIPVVANGGVETRADAEGLLEATGADAVMSSEGLLEDPSLF-DRELTPMSQLQGVEVAHRILSLAAEYMELAGRFPTPMVSI-KGHLFKMLYRLLDFHHDLRDRLAYYEADQAEADAVVREMCRRYLFDPDTRMPLEGTPGVPALPISPKRWYRRH 555
L TVHGRT KTA G NWDII ++K +SIPV+ANGGVET D LEATG D VMSSEG+LE+P+LF D TP G + + L LA +Y+E A P I + HLFK+L++ L H DLRD LA ++ Q E +V E+ R DT EG + WYRRH
Sbjct: 78 LLTVHGRTKEMNKTAVGAINWDIIRRIKEQLSIPVIANGGVETHEDIARCLEATGCDGVMSSEGVLENPALFADGNNTP-----GTDTS--FLELARQYLEFATLHPPASDKIVRAHLFKILFQDLRVHSDLRDALAAAKS-QEEMVHIVDELAERLNGSVDTTA--EGDMKKDMTYAAKTSWYRRH 254
BLAST of mRNA_S-dermatodea_contig11735.1102.1 vs. uniprot
Match: W7TKF8_9STRA (Dihydrouridine synthase n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TKF8_9STRA) HSP 1 Score: 130 bits (328), Expect = 2.050e-30 Identity = 92/234 (39.32%), Postives = 125/234 (53.42%), Query Frame = 1
Query: 1 LETVHGRTARQAKTAQGVANWDIIGKVKRTVSIPVVANGGVETRADAEGLLEATGADAVMSSEGLLEDPSLF------------DRELTPMSQLQGVEVAHRILSLAAEYMELAGRF--PTPMVSIKGHLFKMLYRLLDF--HHDLRDRLAYYEADQAEADAVVREMCRRYLFDPDTRMPLEGTPGVPALPISPKRWYRRHWPEQREA*QGCWSK*FRIVCVSKSACKEIVQPR 654
L T+HGRT Q K + G A+W I K+K IPVVANGGVET DA TGADAVMSSEGLLE+PSLF R + +++ +AHR L+ A EY+ELA +F + ++KGHLFKMLY +L+ ++DLR++L + + VV+E+ D + L T G P+S WYRRH A Q + +CVS +A ++ R
Sbjct: 287 LLTIHGRTREQNKMSVGKADWAAINKIKCACHIPVVANGGVETYEDALACQSVTGADAVMSSEGLLENPSLFLPGSSLLVGGERSRMQSCEREVEAFALAHRQLNFAQEYLELAKKFWPREGVATVKGHLFKMLYHILEVPANYDLREKLGAKGNGIKQYEQVVQELLETRYSSIDVAIVL--TKGAIVSPVS---WYRRHREGHALALQR-----VKQLCVSGNATNAGLKER 510
BLAST of mRNA_S-dermatodea_contig11735.1102.1 vs. uniprot
Match: A0A7S3UVI5_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVI5_HETAK) HSP 1 Score: 127 bits (320), Expect = 7.040e-30 Identity = 74/159 (46.54%), Postives = 93/159 (58.49%), Query Frame = 1
Query: 1 LETVHGRTARQAKTAQGVANWDIIGKVKRTVSIPVVANGGVETRADAEGLLEATGADAVMSSEGLLEDPSLFD---RELTPMSQLQGVEVAHRILSLAAEYMELAGRFPTPMVSIKGHLFKMLYRLLDFHHDLRDRLAYYEADQAEADAVV-REMCRRY 465
L +HGRT Q+KT G A+W++I VK+ V IPV+ANGG+E D + L+ TGADAVMSSE LLE+P LFD ++ L G AHR L LA EY+EL R PT + K H+FK LYRL + DLR + E V+ EM RY
Sbjct: 161 LLCLHGRTVEQSKTNAGSADWEVIRLVKQEVDIPVIANGGIENFDDVQRCLQITGADAVMSSEALLENPMLFDPARSSAAALAALDGAGWAHRQLGLALEYLELVARHPTHYGTFKSHVFKFLYRLFEEQKDLRAKFGDKSTAMFEDMVVIILEMASRY 319
BLAST of mRNA_S-dermatodea_contig11735.1102.1 vs. uniprot
Match: A0A7S0PHH6_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0PHH6_9STRA) HSP 1 Score: 124 bits (312), Expect = 1.230e-28 Identity = 80/201 (39.80%), Postives = 107/201 (53.23%), Query Frame = 1
Query: 1 LETVHGRTARQAKTAQGVANWDIIGKVKRTVSIPVVANGGVETRADAEGLLEATGADAVMSSEGLLEDPSLFDRELTPMSQLQGVEVAHRILSLAAEYMELAGRFPTPM----------VSIKGHLFKMLYRLLDFHHDLRDRLA---YYEADQAEADAVVREMCRRYLFDPDTRMPLEGTPGVPALPISPKRWYRRHWPE 564
L TVHGRT R+ KTA G NW++I + IPV+ANGG+E +D L+ATGA VMSSE LLE+P++F +L G E+ R LA EY+ LA P P+ ++KGHLFK+LYR LD H DLRD+L Y DQ+ + ++R++ R+ D + WYRRH E
Sbjct: 211 LMTVHGRTRRENKTAVGKCNWNMIKDAVELLDIPVIANGGIENPSDVNRCLDATGAIGVMSSEALLENPAIFRDGEKDDLELSGRELVDRQFKLAEEYLALARECP-PLKGSLGENGGHATVKGHLFKILYRFLDHHVDLRDKLGDSKCYHIDQSSS--IIRQLKDRFDIIDDDELEFSIW----------SSWYRRHRSE 398
BLAST of mRNA_S-dermatodea_contig11735.1102.1 vs. uniprot
Match: A0A3R7YT01_9STRA (tRNA-dihydrouridine synthase n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3R7YT01_9STRA) HSP 1 Score: 123 bits (308), Expect = 2.030e-28 Identity = 81/186 (43.55%), Postives = 104/186 (55.91%), Query Frame = 1
Query: 1 LETVHGRTARQAKTAQGVANWDIIGKVKRTVSIPVVANGGVETRADAEGLLEATGADAVMSSEGLLEDPSLFDRELTPMSQLQGVEVAHRILSLAAEYMELAGRFPTPMVSI-KGHLFKMLYRLLDFHHDLRDRLAYYEADQAEADAVVREMCRRYLFDPDTRMPLEGTPGVPALPISPKRWYRRH 555
L TVHGRT KTA NWDII ++K +SIPV+ANGG+ET D LEATG D VMSSEGLLE+P+LF + G + + L LA +Y+E A +P I + HLFKML++ L H DLRD LA ++ + D +V E+ R D + E A+ S WYRRH
Sbjct: 177 LLTVHGRTKEMNKTAVQEVNWDIIRRIKERLSIPVIANGGLETHEDIARCLEATGCDGVMSSEGLLENPALF----ADSNNKPGQDTS--FLQLARQYLEYATLYPPANDKIVRAHLFKMLFQDLRVHSDLRDALAAAKSQKEMVD-IVDELAVRLKKAEDDKATSEIKKTTYAMETS---WYRRH 352
BLAST of mRNA_S-dermatodea_contig11735.1102.1 vs. uniprot
Match: A0A7S2C8F7_9STRA (Hypothetical protein n=3 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C8F7_9STRA) HSP 1 Score: 123 bits (308), Expect = 4.910e-28 Identity = 83/220 (37.73%), Postives = 110/220 (50.00%), Query Frame = 1
Query: 1 LETVHGRTARQAKTAQGVANWDIIGKVKRTVSIPVVANGGVETRADAEGLLEATGADAVMSSEGLLEDPSLFDRELTPMSQLQGVE-----------------------VAHRILSLAAEYMELAGRFPTPMV--SIKGHLFKMLYRLLDFHHDLRDRLAYYEADQAEADAVVREMCRRYLFDPDTRMPLEGTPGV----------PALPISPKRWYRRH 555
+ TVHGRT +Q K A+W ++ V+ ++IPVVANGG+ET +DA L TGAD VMSSE LLE+P LF + L G E VA R LS EY+ L+ FP V + KGH FKMLYRLL+ H D+R+RL + A+ + + RY R+P+E +P L ++ K WYRRH
Sbjct: 226 MVTVHGRTVKQNKNLSERADWSVVRAVREALTIPVVANGGIETTSDALRCLVETGADMVMSSEALLENPGLFQQNTDHSQDLVGSEGGALNGGTSRSEMDYSEWCEAQLVAARQLSYMREYIALSTLFPARDVIGTTKGHAFKMLYRLLEVHTDVRERLVRMR-NLADLSDITDTLAARY------RLPVEASPDELRGFRCDDQSTPLHVAAKTWYRRH 438
BLAST of mRNA_S-dermatodea_contig11735.1102.1 vs. uniprot
Match: D0NNQ3_PHYIT (tRNA-dihydrouridine synthase n=25 Tax=Phytophthora TaxID=4783 RepID=D0NNQ3_PHYIT) HSP 1 Score: 120 bits (302), Expect = 1.410e-27 Identity = 82/188 (43.62%), Postives = 109/188 (57.98%), Query Frame = 1
Query: 1 LETVHGRTARQAKTAQGVANWDIIGKVKRTVSIPVVANGGVETRADAEGLLEATGADAVMSSEGLLEDPSLF-DRELTPMSQLQGVEVAHRILSLAAEYMELAGRFPTPMVSI-KGHLFKMLYRLLDFHHDLRDRLAYYEADQAEADAVVREMCRRYLFDPDTRMPLEGTPGVPALPISPKR-WYRRH 555
L TVHGRT KTA NWDII ++K ++IPV+ANGG+ET D LEATG D VMSSEGLLE+P+LF D TP G + + L LA +Y+E A +P I + HLFK+L++ L H DLRD LA ++ Q E +V E+ R L + ++ P + + + K WYRRH
Sbjct: 176 LLTVHGRTKEMNKTAVREVNWDIIRRIKERLTIPVIANGGIETHEDIARCLEATGCDGVMSSEGLLENPALFADTNNTP-----GEDTS--FLELARQYLECATLYPPASDKIVRAHLFKILFQDLRVHSDLRDALAAAKSQQ-EMVEIVDELAVR-LKEAESE---NAGPEIKKVAYAAKASWYRRH 351 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11735.1102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig11735.1102.1 >prot_S-dermatodea_contig11735.1102.1 ID=prot_S-dermatodea_contig11735.1102.1|Name=mRNA_S-dermatodea_contig11735.1102.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=134bp MSSEGLLEDPSLFDRELTPMSQLQGVEVAHRILSLAAEYMELAGRFPTPMback to top mRNA from alignment at S-dermatodea_contig11735:4483..6619- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig11735.1102.1 ID=mRNA_S-dermatodea_contig11735.1102.1|Name=mRNA_S-dermatodea_contig11735.1102.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2137bp|location=Sequence derived from alignment at S-dermatodea_contig11735:4483..6619- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig11735:4483..6619- >mRNA_S-dermatodea_contig11735.1102.1 ID=mRNA_S-dermatodea_contig11735.1102.1|Name=mRNA_S-dermatodea_contig11735.1102.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at S-dermatodea_contig11735:4483..6619- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |