prot_S-dermatodea_contig11708.1088.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig11708.1088.1
Unique Nameprot_S-dermatodea_contig11708.1088.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length260
Homology
BLAST of mRNA_S-dermatodea_contig11708.1088.1 vs. uniprot
Match: A0A6H5LRF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LRF5_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 1.700e-31
Identity = 107/262 (40.84%), Postives = 133/262 (50.76%), Query Frame = 0
Query:    2 CVLLIIA-----YVQGKLPAWLPFVGGQPQAGWALDLDTAIASARSRAGSICSGRVGGVS-DNAEDVGLPDLVSEEDTTPLSGGGRNGSGVSRRRCARGVVNGDGGDDG---LMWDKRPKPFDHLVFDPVLGVVPWGVLDAWARSGVCTGCGGARC------ASPTSSSPLVPGEGTTDRADATDGG--PPVSSCSAAGSTGVDRQKAKRQLPPVRSTPEWNAWRAARRGALKLVDGKVENGREAPCVTDGVCKKAVAAATV 246
            C+LL+ A     +++G +P WLPF GG  +  WA DLD+AIA ARSRAGS CSGR    S D  +D  LP L+S+ +       G +G+        +GVV GD  DDG   LMWD+RPKP D+L+F PVLGVVP GV+ AW   G C G GG R       A  T+      G G + ++ +  G   P   S  A    GV + K   QLPP     EW  W AARR         VE G           KK V AAT+
Sbjct:  439 CILLLSALGLSTFLRGSMPHWLPFFGGGRRQRWAKDLDSAIAHARSRAGSFCSGRASVFSGDPVDDSDLPGLISDSEE------GEDGNDT------QGVVPGD--DDGEAPLMWDRRPKPDDYLIFHPVLGVVPAGVVRAWGGDG-CGGWGGVRAEAAGARAGGTNGGTXGKGCGCSSKSSSPRGARAPAAMSSKATAVGGVVKGK---QLPP----DEWPEWLAARRATAAAAVADVEAG-----------KKGVGAATI 667          
BLAST of mRNA_S-dermatodea_contig11708.1088.1 vs. uniprot
Match: D8LDJ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDJ6_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 4.220e-30
Identity = 79/155 (50.97%), Postives = 98/155 (63.23%), Query Frame = 0
Query:    2 CVLLIIA-----YVQGKLPAWLPFVGGQPQAGWALDLDTAIASARSRAGSICSGRVGGVS-DNAEDVGLPDLVSEEDTTPLSGGGRNGSGVSRRRCARGVVNGDGGDDG---LMWDKRPKPFDHLVFDPVLGVVPWGVLDAWARSGVCTGCGGAR 147
            C+LL+ A     +++G +P WLPF GG  +  WA+DLD+AIA ARSRAGS CSGR    S D  +D  LPDL+S+ +       G +G+G       +GVV GD  DDG   LMWD+RPKP D+LVF PVLGVVP GV+ AW   G C G GG R
Sbjct:  442 CILLLSALVLGTFLRGSIPHWLPFFGGDRRQRWAIDLDSAIAHARSRAGSFCSGRASVFSGDPVDDSDLPDLISDSEE------GEDGNGD------QGVVPGD--DDGETPLMWDRRPKPDDYLVFHPVLGVVPAGVVRAWGGDG-CGGWGGVR 581          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11708.1088.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LRF5_9PHAE1.700e-3140.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDJ6_ECTSI4.220e-3050.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..12
score: 0.548

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11708contigS-dermatodea_contig11708:1626..2935 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11708.1088.1mRNA_S-dermatodea_contig11708.1088.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig11708 1626..2935 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig11708.1088.1 ID=prot_S-dermatodea_contig11708.1088.1|Name=mRNA_S-dermatodea_contig11708.1088.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=260bp
LCVLLIIAYVQGKLPAWLPFVGGQPQAGWALDLDTAIASARSRAGSICSG
RVGGVSDNAEDVGLPDLVSEEDTTPLSGGGRNGSGVSRRRCARGVVNGDG
GDDGLMWDKRPKPFDHLVFDPVLGVVPWGVLDAWARSGVCTGCGGARCAS
PTSSSPLVPGEGTTDRADATDGGPPVSSCSAAGSTGVDRQKAKRQLPPVR
STPEWNAWRAARRGALKLVDGKVENGREAPCVTDGVCKKAVAAATVAAAV
AAAGSKAIPR
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