mRNA_S-dermatodea_contig11708.1088.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11708.1088.1
Unique NamemRNA_S-dermatodea_contig11708.1088.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11708.1088.1 vs. uniprot
Match: A0A6H5LRF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LRF5_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 1.700e-31
Identity = 107/262 (40.84%), Postives = 133/262 (50.76%), Query Frame = 1 
Query:    4 CVLLIIA-----YVQGKLPAWLPFVGGQPQAGWALDLDTAIASARSRAGSICSGRVGGVS-DNAEDVGLPDLVSEEDTTPLSGGGRNGSGVSRRRCARGVVNGDGGDDG---LMWDKRPKPFDHLVFDPVLGVVPWGVLDAWARSGVCTGCGGARC------ASPTSSSPLVPGEGTTDRADATDGG--PPVSSCSAAGSTGVDRQKAKRQLPPVRSTPEWNAWRAARRGALKLVDGKVENGREAPCVTDGVCKKAVAAATV 738
            C+LL+ A     +++G +P WLPF GG  +  WA DLD+AIA ARSRAGS CSGR    S D  +D  LP L+S+ +       G +G+        +GVV GD  DDG   LMWD+RPKP D+L+F PVLGVVP GV+ AW   G C G GG R       A  T+      G G + ++ +  G   P   S  A    GV + K   QLPP     EW  W AARR         VE G           KK V AAT+
Sbjct:  439 CILLLSALGLSTFLRGSMPHWLPFFGGGRRQRWAKDLDSAIAHARSRAGSFCSGRASVFSGDPVDDSDLPGLISDSEE------GEDGNDT------QGVVPGD--DDGEAPLMWDRRPKPDDYLIFHPVLGVVPAGVVRAWGGDG-CGGWGGVRAEAAGARAGGTNGGTXGKGCGCSSKSSSPRGARAPAAMSSKATAVGGVVKGK---QLPP----DEWPEWLAARRATAAAAVADVEAG-----------KKGVGAATI 667
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BLAST of mRNA_S-dermatodea_contig11708.1088.1 vs. uniprot
Match: D8LDJ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDJ6_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 4.220e-30
Identity = 79/155 (50.97%), Postives = 98/155 (63.23%), Query Frame = 1 
Query:    4 CVLLIIA-----YVQGKLPAWLPFVGGQPQAGWALDLDTAIASARSRAGSICSGRVGGVS-DNAEDVGLPDLVSEEDTTPLSGGGRNGSGVSRRRCARGVVNGDGGDDG---LMWDKRPKPFDHLVFDPVLGVVPWGVLDAWARSGVCTGCGGAR 441
            C+LL+ A     +++G +P WLPF GG  +  WA+DLD+AIA ARSRAGS CSGR    S D  +D  LPDL+S+ +       G +G+G       +GVV GD  DDG   LMWD+RPKP D+LVF PVLGVVP GV+ AW   G C G GG R
Sbjct:  442 CILLLSALVLGTFLRGSIPHWLPFFGGDRRQRWAIDLDSAIAHARSRAGSFCSGRASVFSGDPVDDSDLPDLISDSEE------GEDGNGD------QGVVPGD--DDGETPLMWDRRPKPDDYLVFHPVLGVVPAGVVRAWGGDG-CGGWGGVR 581
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11708.1088.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LRF5_9PHAE1.700e-3140.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDJ6_ECTSI4.220e-3050.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11708contigS-dermatodea_contig11708:1626..2935 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_000310.1
Exons2
Model size782
Cds size780
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924215.074006-CDS-S-dermatodea_contig11708:1625..23711622924215.074006-CDS-S-dermatodea_contig11708:1625..2371Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11708 1626..2371 -
1694079098.5885048-CDS-S-dermatodea_contig11708:1625..23711694079098.5885048-CDS-S-dermatodea_contig11708:1625..2371Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11708 1626..2371 -
1622924215.0855303-CDS-S-dermatodea_contig11708:2901..29351622924215.0855303-CDS-S-dermatodea_contig11708:2901..2935Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11708 2902..2935 -
1694079098.6003575-CDS-S-dermatodea_contig11708:2901..29351694079098.6003575-CDS-S-dermatodea_contig11708:2901..2935Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11708 2902..2935 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11708.1088.1prot_S-dermatodea_contig11708.1088.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11708 1626..2935 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11708.1088.1

>prot_S-dermatodea_contig11708.1088.1 ID=prot_S-dermatodea_contig11708.1088.1|Name=mRNA_S-dermatodea_contig11708.1088.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=260bp
LCVLLIIAYVQGKLPAWLPFVGGQPQAGWALDLDTAIASARSRAGSICSG
RVGGVSDNAEDVGLPDLVSEEDTTPLSGGGRNGSGVSRRRCARGVVNGDG
GDDGLMWDKRPKPFDHLVFDPVLGVVPWGVLDAWARSGVCTGCGGARCAS
PTSSSPLVPGEGTTDRADATDGGPPVSSCSAAGSTGVDRQKAKRQLPPVR
STPEWNAWRAARRGALKLVDGKVENGREAPCVTDGVCKKAVAAATVAAAV
AAAGSKAIPR
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mRNA from alignment at S-dermatodea_contig11708:1626..2935-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11708.1088.1 ID=mRNA_S-dermatodea_contig11708.1088.1|Name=mRNA_S-dermatodea_contig11708.1088.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1310bp|location=Sequence derived from alignment at S-dermatodea_contig11708:1626..2935- (Saccorhiza dermatodea SderLu1190fm monoicous)
TTGTGTGTGTTGCTCATCATCGCGTACGTGCAAGGTGAGCGGGGCGTCGT
GGCATTAGCGGCTCGTTCTGGTTCAGATGGATTGTGGATTCGTCGGATGT
GGGTTTGTGGTCGTTGGGTACTTCTGTTGTCGTGCTCGTTGATATCTTCG
TTGCCGCCTTCGTCACCTGTGGTCCACTGCTGCTGCTGTGCGGTTTCCAT
GCCAGGGAGGTTCGCTGTTGTGCTGTTTCACTGCCCGGTTCGCTACCCGC
GCAAACAACTACGCCCCACTCGGTACCGTGTCAAGCGTTTCAGCATCTTT
GATGGCGTGCGTGACGTAGCATACCCGCGCTCGAATTTCTGTAGTTGAAC
CCGCTGCCCGTGACGCCAACGGTCTGACCGCTTTTCCGCAACGTCCTTGG
TCTAGTGACAGCCTAGGTACGTTCGTCAACATTCACAGAGCCCCCCCCTA
GACCACCCCCCCCCGGCGCGTCCACTGCAGCGTACCCGGATGCCAGACTC
ATTGGTCACGCCCGCCAGCCAAAGGCCTGACCACACGACTAACCCGTCCC
CTATTCCCCACCAGGAAAATTGCCGGCGTGGTTACCTTTCGTGGGGGGTC
AACCGCAGGCGGGATGGGCCCTGGACCTGGATACCGCCATCGCCTCCGCG
CGCTCTCGTGCGGGAAGTATTTGCTCCGGGAGGGTCGGTGGCGTATCGGA
CAACGCGGAAGATGTTGGCCTCCCGGATCTTGTTTCGGAGGAGGACACGA
CGCCGCTTTCAGGGGGGGGGCGGAACGGCAGCGGCGTTTCAAGAAGACGG
TGCGCGCGAGGTGTCGTAAACGGCGATGGCGGAGACGACGGTCTGATGTG
GGACAAGCGGCCGAAGCCGTTTGACCACTTGGTGTTCGACCCCGTGCTAG
GCGTTGTTCCTTGGGGAGTGTTGGATGCGTGGGCACGTTCGGGAGTGTGT
ACGGGGTGCGGTGGAGCGCGGTGTGCGTCCCCTACCTCCTCATCGCCGTT
GGTACCGGGGGAGGGCACTACCGACCGGGCCGATGCTACCGACGGCGGCC
CGCCGGTGAGTTCCTGCTCCGCGGCAGGGTCAACTGGGGTGGACCGACAG
AAGGCCAAGCGCCAGCTTCCTCCCGTCCGATCCACGCCGGAGTGGAACGC
GTGGCGGGCGGCGCGCAGGGGAGCATTGAAGCTCGTAGACGGGAAGGTCG
AGAACGGACGAGAGGCGCCTTGCGTTACAGACGGGGTTTGCAAGAAGGCG
GTGGCGGCGGCAACGGTAGCGGCGGCGGTAGCGGCCGCGGGAAGCAAGGC
TATCCCTCGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11708:1626..2935-

>mRNA_S-dermatodea_contig11708.1088.1 ID=mRNA_S-dermatodea_contig11708.1088.1|Name=mRNA_S-dermatodea_contig11708.1088.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1560bp|location=Sequence derived from alignment at S-dermatodea_contig11708:1626..2935- (Saccorhiza dermatodea SderLu1190fm monoicous)
TTGTGTGTGTTGCTCATCATCGCGTACGTGCAAGTTGTGTGTGTTGCTCA
TCATCGCGTACGTGCAAGGAAAATTGCCGGCGTGGTTACCTTTCGTGGGG
GGTCAACCGCAGGCGGGATGGGCCCTGGACCTGGATACCGCCATCGCCTC
CGCGCGCTCTCGTGCGGGAAGTATTTGCTCCGGGAGGGTCGGTGGCGTAT
CGGACAACGCGGAAGATGTTGGCCTCCCGGATCTTGTTTCGGAGGAGGAC
ACGACGCCGCTTTCAGGGGGGGGGCGGAACGGCAGCGGCGTTTCAAGAAG
ACGGTGCGCGCGAGGTGTCGTAAACGGCGATGGCGGAGACGACGGTCTGA
TGTGGGACAAGCGGCCGAAGCCGTTTGACCACTTGGTGTTCGACCCCGTG
CTAGGCGTTGTTCCTTGGGGAGTGTTGGATGCGTGGGCACGTTCGGGAGT
GTGTACGGGGTGCGGTGGAGCGCGGTGTGCGTCCCCTACCTCCTCATCGC
CGTTGGTACCGGGGGAGGGCACTACCGACCGGGCCGATGCTACCGACGGC
GGCCCGCCGGTGAGTTCCTGCTCCGCGGCAGGGTCAACTGGGGTGGACCG
ACAGAAGGCCAAGCGCCAGCTTCCTCCCGTCCGATCCACGCCGGAGTGGA
ACGCGTGGCGGGCGGCGCGCAGGGGAGCATTGAAGCTCGTAGACGGGAAG
GTCGAGAACGGACGAGAGGCGCCTTGCGTTACAGACGGGGTTTGCAAGAA
GGCGGTGGCGGCGGCAACGGTAGCGGCGGCGGTAGCGGCCGCGGGAAGCA
AGGCTATCCCTCGGGAAAATTGCCGGCGTGGTTACCTTTCGTGGGGGGTC
AACCGCAGGCGGGATGGGCCCTGGACCTGGATACCGCCATCGCCTCCGCG
CGCTCTCGTGCGGGAAGTATTTGCTCCGGGAGGGTCGGTGGCGTATCGGA
CAACGCGGAAGATGTTGGCCTCCCGGATCTTGTTTCGGAGGAGGACACGA
CGCCGCTTTCAGGGGGGGGGCGGAACGGCAGCGGCGTTTCAAGAAGACGG
TGCGCGCGAGGTGTCGTAAACGGCGATGGCGGAGACGACGGTCTGATGTG
GGACAAGCGGCCGAAGCCGTTTGACCACTTGGTGTTCGACCCCGTGCTAG
GCGTTGTTCCTTGGGGAGTGTTGGATGCGTGGGCACGTTCGGGAGTGTGT
ACGGGGTGCGGTGGAGCGCGGTGTGCGTCCCCTACCTCCTCATCGCCGTT
GGTACCGGGGGAGGGCACTACCGACCGGGCCGATGCTACCGACGGCGGCC
CGCCGGTGAGTTCCTGCTCCGCGGCAGGGTCAACTGGGGTGGACCGACAG
AAGGCCAAGCGCCAGCTTCCTCCCGTCCGATCCACGCCGGAGTGGAACGC
GTGGCGGGCGGCGCGCAGGGGAGCATTGAAGCTCGTAGACGGGAAGGTCG
AGAACGGACGAGAGGCGCCTTGCGTTACAGACGGGGTTTGCAAGAAGGCG
GTGGCGGCGGCAACGGTAGCGGCGGCGGTAGCGGCCGCGGGAAGCAAGGC
TATCCCTCGG
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