mRNA_S-dermatodea_contig11646.1048.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11646.1048.1
Unique NamemRNA_S-dermatodea_contig11646.1048.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig11646.1048.1 vs. uniprot
Match: A0A6H5JYW1_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JYW1_9PHAE)

HSP 1 Score: 196 bits (499), Expect = 1.120e-57
Identity = 105/189 (55.56%), Postives = 142/189 (75.13%), Query Frame = 1 
Query:   61 SVGLLTLWQLERIEEL---LLPTLGEQELGSSP----KRIEDFYAFQNEDTEVGRGQYGTVSTAVDRATGEVVAVKRVPRENATEANFREEAEAHREAGSHPNVVGLKGIFADDECWYIVMELAEGGELYDRLTTEGVLLKERDVCSVLRETADALAYMHDRGIVHGDIKPENMLLTNPAPAAVGTAGE 606
            S+GL+ L      +EL   LL  L +Q   ++     +RI++FY  +++ T +G+GQ+GTV+TA D+ATGEVVAVK VPR  A+E++FREE + HRE  SHPNVVG+KGI+AD++CWY+VMELAEGGEL+DRLTTEG+ L + DV S+LR+TA A+A++H+  IVHGD+KPENMLL   A AA G+  E
Sbjct:   68 SLGLVILSGYSYDDELPSRLLEKLQQQTSSANAVWPLRRIDEFYTVRSDQT-LGQGQFGTVTTATDKATGEVVAVKCVPRSEASESHFREETDVHREVASHPNVVGVKGIYADEDCWYLVMELAEGGELFDRLTTEGLALDDGDVRSLLRDTAKAIAFLHEHSIVHGDVKPENMLL---AAAATGSGDE 252
[Close]
BLAST of mRNA_S-dermatodea_contig11646.1048.1 vs. uniprot
Match: A0A836CCA1_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCA1_9STRA)

HSP 1 Score: 134 bits (336), Expect = 3.910e-34
Identity = 64/139 (46.04%), Postives = 90/139 (64.75%), Query Frame = 1 
Query:  151 KRIEDFYAFQNEDTEVGRGQYGTVSTAVDRATGEVVAVKRVPRENATEANFREEAEAHREAGSHPNVVGLKGIFADDECWYIVMELAEGGELYDRLTTEGVLLKERDVCSVLRETADALAYMHDRGIVHGDIKPENMLL 567
            +R +DFY    + + +G G YGTV  A  R TGEVVAVK++PR   +      E E  R AG H ++V L  +F DD+ WY+VME+A GGEL+DR+  +G LL E D C V+++   A+ ++H   IVHGDIKPEN+++
Sbjct:   77 RRFDDFYKLLEKTSPIGMGAYGTVCAAAHRETGEVVAVKQIPRSAVSAKEVMSEVEILRVAGDHRHIVRLMDLFWDDDLWYVVMEMAHGGELFDRIVNKG-LLSEHDTCKVMQDLLHAIEFLHMHNIVHGDIKPENIMI 214
[Close]
BLAST of mRNA_S-dermatodea_contig11646.1048.1 vs. uniprot
Match: A0A6H5JEK9_9PHAE (cGMP-dependent protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEK9_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 5.700e-32
Identity = 73/153 (47.71%), Postives = 96/153 (62.75%), Query Frame = 1 
Query:  109 LLPTLGEQELGSSPKRIEDFYAFQNEDTEVGRGQYGTVSTAVDRATGEVVAVKRVPRENATEANFREEAEAHREAGSHPNVVGLKGIFADDECWYIVMELAEGGELYDRLTTEGVLLKERDVCSVLRETADALAYMHDRGIVHGDIKPENMLL 567
            LLP     E G   +RI+D Y     D+ +G+G +G V   V + TGEVVAVK++PR   +    + E +  R AG H NVVG + +F+DD  +YIVME A GGEL+DRL T+G    E D  S+LRE  DA+AY+H   I+H DIKPEN+LL
Sbjct:  144 LLPKPSVVECGGQ-RRIQDMYRMV--DSPIGQGAFGVVCAGVHKVTGEVVAVKQIPRRLMSTHRLQAEVDMLRMAGQHKNVVGFRDLFSDDNFYYIVMEFATGGELFDRLVTKGAH-SEHDAASLLREVVDAVAYLHGHSIIHFDIKPENILL 292
[Close]
BLAST of mRNA_S-dermatodea_contig11646.1048.1 vs. uniprot
Match: A0A662XVP1_9STRA (cGMP-dependent protein kinase n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XVP1_9STRA)

HSP 1 Score: 129 bits (324), Expect = 9.100e-31
Identity = 77/186 (41.40%), Postives = 105/186 (56.45%), Query Frame = 1 
Query:   25 ARYGGLAAAVA-----GSVGLLTLWQLERIEELLLPTLGEQELGSSPKRIEDFYAFQNEDTEVGRGQYGTVSTAVDRATGEVVAVKRVPRENATEANFREEAEAHREAGSHPNVVGLKGIFADDECWYIVMELAEGGELYDRLTTEGVLLKERDVCSVLRETADALAYMHDRGIVHGDIKPENMLL 567
            A  GG+A A+A      +   +T    ER +E + P           ++IED YA  +E   +G G Y  V   VDR TGE+VAVK + +   +   F  E +  R AG HPN++ L+G +  ++CW+IV ELA+ GEL+D L   G    ER   S +RE  DAL Y+H +GIVHGDIKPEN+LL
Sbjct:  127 ATMGGMALAIAVAASSNNEAAVTEGHKERDDEPVSPV-------RRGRKIEDEYAITDE--VIGEGGYCVVQKGVDRRTGELVAVKTLSKSETSAREFWTEVDVLRVAGQHPNILQLRGTYETEDCWFIVQELAQDGELFDHLIANGAY-SERQASSAVRELCDALHYLHRKGIVHGDIKPENILL 302
[Close]
BLAST of mRNA_S-dermatodea_contig11646.1048.1 vs. uniprot
Match: W7TAW9_9STRA (Calcium calmodulin-dependent protein kinase i n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TAW9_9STRA)

HSP 1 Score: 124 bits (310), Expect = 1.170e-29
Identity = 62/143 (43.36%), Postives = 88/143 (61.54%), Query Frame = 1 
Query:  151 KRIEDFYAFQNEDTEVGRGQYGTVSTAVDRATGEVVAVKRVPRENATEANFREEAEAHREAGSHPNVVGLKGIFADDECWYIVMELAEGGELYDRLTTEGVLLKERDVCSVLRETADALAYMHDRGIVHGDIKPENMLLTNPA 579
            + I +FY    +   +G G +G V     R TGEVVA+K++P++   E     E +  R AG H N++G + +F D+E WYIVME+AEGGEL+DRL   G    E     ++RE  DA++Y+H +GIVH D+KPEN+LL   A
Sbjct:  177 RNIHEFYKIVEKP--IGAGGFGVVCVGSHRETGEVVAIKQLPKKAIRELKVMTEVDILRLAGEHRNIIGFRDLFQDEENWYIVMEMAEGGELFDRLVERGAY-SEAQASEIMREIVDAVSYLHQQGIVHCDLKPENLLLATKA 316
[Close]
BLAST of mRNA_S-dermatodea_contig11646.1048.1 vs. uniprot
Match: M4B4N3_HYAAE (cGMP-dependent protein kinase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B4N3_HYAAE)

HSP 1 Score: 125 bits (313), Expect = 2.640e-29
Identity = 62/127 (48.82%), Postives = 80/127 (62.99%), Query Frame = 1 
Query:  187 DTEVGRGQYGTVSTAVDRATGEVVAVKRVPRENATEANFREEAEAHREAGSHPNVVGLKGIFADDECWYIVMELAEGGELYDRLTTEGVLLKERDVCSVLRETADALAYMHDRGIVHGDIKPENMLL 567
            D  VG G Y  V   VDR TGEVVAVK + +   +   F  E +  R AG HPN++ L+G +  ++CW+IV ELA+GGEL+D L   G    ER     +R+  DAL Y+H +GIVHGDIKPEN+LL
Sbjct:  119 DEVVGEGGYCVVQKGVDRRTGEVVAVKMLSKSETSAREFWSEVDVLRVAGQHPNILELRGTYETEDCWFIVQELAQGGELFDHLVANGAY-SERQASDTIRQLCDALQYLHRKGIVHGDIKPENILL 244
[Close]
BLAST of mRNA_S-dermatodea_contig11646.1048.1 vs. uniprot
Match: A0A4D9CX25_9STRA (cGMP-dependent protein kinase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CX25_9STRA)

HSP 1 Score: 124 bits (310), Expect = 6.780e-29
Identity = 62/143 (43.36%), Postives = 88/143 (61.54%), Query Frame = 1 
Query:  151 KRIEDFYAFQNEDTEVGRGQYGTVSTAVDRATGEVVAVKRVPRENATEANFREEAEAHREAGSHPNVVGLKGIFADDECWYIVMELAEGGELYDRLTTEGVLLKERDVCSVLRETADALAYMHDRGIVHGDIKPENMLLTNPA 579
            + I +FY    +   +G G +G V     R TGEVVA+K++P++   E     E +  R AG H N++G + +F D+E WYIVME+AEGGEL+DRL   G    E     ++RE  DA++Y+H +GIVH D+KPEN+LL   A
Sbjct:  134 RNIHEFYKIVEKP--IGAGGFGVVCVGSHRETGEVVAIKQLPKKAIRELKVMTEVDILRLAGEHRNIIGFRDLFQDEENWYIVMEMAEGGELFDRLVERGAY-SEAQASEIMREIVDAVSYLHQQGIVHCDLKPENLLLATKA 273
[Close]
BLAST of mRNA_S-dermatodea_contig11646.1048.1 vs. uniprot
Match: G4ZCK3_PHYSP (Protein kinase domain-containing protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZCK3_PHYSP)

HSP 1 Score: 118 bits (296), Expect = 9.450e-29
Identity = 59/129 (45.74%), Postives = 80/129 (62.02%), Query Frame = 1 
Query:  187 DTEVGRGQYGTVSTAVDRATGEVVAVKRVPRENATEANFREEAEAHREAGSHPNVVGLKGIFADDECWYIVMELAEGGELYDRLTTEGVLLKERDVCSVLRETADALAYMHDRGIVHGDIKPENMLLTN 573
            D  VG G Y  V   VD+ TGE+VAVK + +   +   F  E +  R AG HPN++ L+G +  + CW+IV ELA+ GEL+D L   G    E+   + +R+  DAL Y+H +GIVHGDIKPEN+LL N
Sbjct:   23 DEVVGEGGYCVVQKGVDKRTGELVAVKMLSKSETSAREFWSEVDVLRVAGQHPNILQLRGTYETEYCWFIVQELAQDGELFDHLIANGAY-SEQQASNTIRQLCDALQYLHRKGIVHGDIKPENVLLHN 150
[Close]
BLAST of mRNA_S-dermatodea_contig11646.1048.1 vs. uniprot
Match: A0A835ZES4_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZES4_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.270e-28
Identity = 61/126 (48.41%), Postives = 87/126 (69.05%), Query Frame = 1 
Query:  196 VGRGQYGTVSTAVDRATGEVVAVKRVPRENATEANFREEAEAHREAGSHPNVVGLKGIFADDECWYIVMELAEGGELYDRLTTEGVLLKERDVCSVLRETADALAYMHDRGIVHGDIKPENMLLTN 573
            +G G YG+V  AVD+ATGE+VAVKRVP+  ++EA  ++E     +A +H N++ L+ +  D   WYIVMELA G ELYDRL T G +L +    ++L++  DAL Y+H  GI HGDIKPEN+++ +
Sbjct:   99 LGGGNYGSVFKAVDQATGELVAVKRVPKSKSSEAAIQDETSI-LQATAHKNIIQLRAVGGDQSSWYIVMELARGVELYDRLVTRG-MLSQAQSSALLKQLLDALVYLHRCGITHGDIKPENIIVND 222
[Close]
BLAST of mRNA_S-dermatodea_contig11646.1048.1 vs. uniprot
Match: A0A6G0XLI8_9STRA (cGMP-dependent protein kinase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XLI8_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.550e-28
Identity = 66/137 (48.18%), Postives = 85/137 (62.04%), Query Frame = 1 
Query:  157 IEDFYAFQNEDTEVGRGQYGTVSTAVDRATGEVVAVKRVPRENATEANFREEAEAHREAGSHPNVVGLKGIFADDECWYIVMELAEGGELYDRLTTEGVLLKERDVCSVLRETADALAYMHDRGIVHGDIKPENMLL 567
            IED Y F   D  +G G Y  V  A  R TGEVVAVK + + N +  +F  E E  R AGSHPN++ L+G++  D  WYIV ELA GGEL+D L   G    E+D    +R+   AL ++H +GIVHGDIKPEN++L
Sbjct:   72 IEDEYEFLKGDI-LGEGGYCVVRKARHRKTGEVVAVKELLKRNTSSKDFWAEVEMLRIAGSHPNIISLQGVYESDTKWYIVQELANGGELFDHLVANGAY-SEKDASRGIRDMCQALLHLHGKGIVHGDIKPENIML 206
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11646.1048.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYW1_9PHAE1.120e-5755.56Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A836CCA1_9STRA3.910e-3446.04Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A6H5JEK9_9PHAE5.700e-3247.71cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
A0A662XVP1_9STRA9.100e-3141.40cGMP-dependent protein kinase n=2 Tax=Nothophytoph... [more]
W7TAW9_9STRA1.170e-2943.36Calcium calmodulin-dependent protein kinase i n=2 ... [more]
M4B4N3_HYAAE2.640e-2948.82cGMP-dependent protein kinase n=1 Tax=Hyaloperonos... [more]
A0A4D9CX25_9STRA6.780e-2943.36cGMP-dependent protein kinase n=1 Tax=Nannochlorop... [more]
G4ZCK3_PHYSP9.450e-2945.74Protein kinase domain-containing protein (Fragment... [more]
A0A835ZES4_9STRA1.270e-2848.41Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A6G0XLI8_9STRA1.550e-2848.18cGMP-dependent protein kinase n=1 Tax=Aphanomyces ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11646contigS-dermatodea_contig11646:3245..6281 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score206.5
Seed ortholog evalue1.3e-50
Seed eggNOG ortholog2880.D8LF86
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0032@1,KOG0032@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein kinase-like domain
Ec32 orthologEc-01_004020.1
Exons3
Model size671
Cds size669
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11646.1048.1prot_S-dermatodea_contig11646.1048.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11646 3246..6281 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924212.0802877-CDS-S-dermatodea_contig11646:3245..35511622924212.0802877-CDS-S-dermatodea_contig11646:3245..3551Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11646 3246..3551 -
1694079096.5380871-CDS-S-dermatodea_contig11646:3245..35511694079096.5380871-CDS-S-dermatodea_contig11646:3245..3551Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11646 3246..3551 -
1622924212.0912952-CDS-S-dermatodea_contig11646:4011..42091622924212.0912952-CDS-S-dermatodea_contig11646:4011..4209Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11646 4012..4209 -
1694079096.5486424-CDS-S-dermatodea_contig11646:4011..42091694079096.5486424-CDS-S-dermatodea_contig11646:4011..4209Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11646 4012..4209 -
1622924212.1001625-CDS-S-dermatodea_contig11646:6116..62811622924212.1001625-CDS-S-dermatodea_contig11646:6116..6281Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11646 6117..6281 -
1694079096.5583389-CDS-S-dermatodea_contig11646:6116..62811694079096.5583389-CDS-S-dermatodea_contig11646:6116..6281Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11646 6117..6281 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11646.1048.1

>prot_S-dermatodea_contig11646.1048.1 ID=prot_S-dermatodea_contig11646.1048.1|Name=mRNA_S-dermatodea_contig11646.1048.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=223bp
FWRATPAQARYGGLAAAVAGSVGLLTLWQLERIEELLLPTLGEQELGSSP
KRIEDFYAFQNEDTEVGRGQYGTVSTAVDRATGEVVAVKRVPRENATEAN
FREEAEAHREAGSHPNVVGLKGIFADDECWYIVMELAEGGELYDRLTTEG
VLLKERDVCSVLRETADALAYMHDRGIVHGDIKPENMLLTNPAPAAVGTA
GEHVVERDTTTVPGARAVGEEGG
back to top

mRNA from alignment at S-dermatodea_contig11646:3245..6281-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11646.1048.1 ID=mRNA_S-dermatodea_contig11646.1048.1|Name=mRNA_S-dermatodea_contig11646.1048.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3037bp|location=Sequence derived from alignment at S-dermatodea_contig11646:3245..6281- (Saccorhiza dermatodea SderLu1190fm monoicous)
TTTTGGCGGGCGACCCCGGCGCAGGCTCGGTATGGCGGACTGGCGGCGGC
CGTGGCGGGATCGGTGGGTCTGCTGACGCTGTGGCAGCTGGAGAGGATAG
AGGAGCTGCTGCTGCCGACGCTCGGGGAGCAGGAGCTGGGATCGTCACCG
AAAAGAATAGAAGACGTGAGTCGAGTCGAGTCGTGTGGTTTTGTGCTGTG
TGTTGAATTTTTGTGCCGTTTTTGTTTTGCCATGCCGAAAGGGTTTTTGG
TGGCTCTGACGAGTTTTCGAGTACGATCCATTCTATTCTATAGTAGTTTT
GGGGCGTCAGGCGTATTCTCGTTATCGCGTTCGTGTGGAGCACGCTTGGA
GGTGTCAGAATTATAATCGAATATTTGTACCAGTACATTATTGTACAGCA
GTACCAGTAGTATGGCTCGTAAATACCACCGCCCCGGCCCCCCACCCCCG
CCAATCTTTCGGCTGCGAATAGCCAGTGACTGACTCGGGAGAGGCGGGTG
CATAGCAGAGGGACGGAGAGGGCGGAACGGAAATAACACGCCGCGCTAGT
CGGAGAGAGAGCTCCTCGTGTCGATTGAACTGATGGATCTCCTCGCTCGG
CAACCGTTGGCCCTTTGTCCTTCCTGTTTGGAAAAACGAAAAACATATGA
TACTTACAGAGTACTGTGTGTACGACCTCCTTGCTGCTATTTCGTTGCTC
CGCACGCGTTTCAAAGGGCACAGACAGCAGCACAAGAGCATTTTAGTATG
AAAGCGCGCTTCGTTGCCGAAGGATTGGTGTCTCCCTGGGTTTGCCGCTG
TAGCGTAGTTCACGGACTGACCCACGGGCCGGCGAGATTAAAAATATTTA
TGCTTTCATTTGGTGATTATTTTGATTGATCCGATCAAGGGTCACTCATT
TTTTTTTTAAATAATATCATATACCAGGTATATAAAACAAAAAATATTAT
TATACGTAGTGCCAGGGGTACTTACTCATTGCTTGAGTCTACGCTGTGCC
CTCACCACCCCAATGCACCCATCATATCTCTGCAAGTAAAATGAAACTCG
CTGCCAGGCGTTCCCTATTGTGTCGGTGTAGTTTAGAGTGCTACCATAGG
CAGGCAGAAGCTCTCAGCCCTTACCCGGAAAGCAGTATTATATCATACAC
GGATACATTTTGTGACTCTTATTATACTATAGCCAGTATAATAGTATAAT
AACGCTCGATTGGCATCCATCACATGTATGATACCAGAGGGCATACATAC
TTGTATGTACAAGTACACACGTGAAGAGCAGTCTGCTGTTTGTACTTGGA
CTTGCATACAAAGCCCAAACCGGTACAAATATCTTCCAGGATCTCTCCGT
GCCCGTTTGTACGTATGTATCATTTTTATGGCCGCGGAGTGCGTATGTAA
CTACAACTATGGTATTTATGTACGTATGTACAGTATGGGCCAGATCGAAA
GATGATCAAATTTCAAGTTTCCAACTTGACACTTGTTGATGGCTGCGGTC
GGACGGTCGGAGCCTTTGGAGAAACACCCTATTATAATACTCCGTAATAA
TAAGTATACCTTACGGTCTTTCTCCAAAGGTCGGGGTAGTTAGACGTGAA
AATACAACTGACAAAAGAGTACCATATAATACAAGTGATACCTCTTGTGG
AGACCGTTGTCATCTCACACATGAAACGTGTAGAGGTTGTTCTGCAGAGT
ATGCTTATTTAACAGGTGAAAATGCACATACTCCTGTACTACAGCTGTAG
TAGGCTTTCCTCTCGGTGCGTTTCGCAATGAAGGCAGAGGATGATGACCA
GTCGCCAGCCGTCGCAATTCGGCGTTGTATCATACGCTCGGTATAATTTT
CGTGGATTTTTGTGACTCGTGACGACGCAAAGTCGGCTCAAAGTCAGTGT
GTTGTGTGTTCCATGCGACAAAAGATTTTCGATACAAAACCCAAGTCACG
TTCGAGTCGCGAGCGACGCCAGACCACACACCACCCGCCCAAGCCCTGGG
CCTCTTTTCACTTCCCACCAAACCCTCTCCGCATCCCCGTGCACGCCATG
AAACCAAACGCCGCCTACGCAGTTTTACGCCTTCCAGAACGAAGACACCG
AAGTCGGCCGCGGTCAGTACGGTACCGTCTCAACCGCGGTAGACAGGGCG
ACGGGAGAGGTGGTGGCCGTGAAACGCGTGCCGCGGGAAAACGCGACGGA
GGCCAACTTTCGTGAGGAGGCGGAGGCGCACCGGGAGGCGGGGAGCCACC
CCAACGTCGTCGGCTTGAAGGTGAGACACCAGAGAAGATGCGATGCACCC
GCCGGGTGTATTGTATTGTTTAGTCCTTCTTGGCGTATGTTCTCGGAGAA
GATCGTGCTTGGTGCAGTCGTCGTCGCCAGTCAGCCGAGGCGGAATATAC
TTGTGGCACGGTTTTGCTTGTGCACAGGACTGGCCGTGGAGGTCCAAGTA
CCGCTAGGATTATTCTTGCATCGCAACTGAACGATGTGATTGCGGTAGTG
CTTATGATATCGGGTGTATGAAACGCCTCCTACGCCAGGAAATTTAACGC
AACAAAACCGCGACGTTCGTTTCGCGATTGCTTGTTTTTCGCAAGGGTGA
CGGGCGCAGTAGGACGTTGTTTTGAGGACATAGTGTGCATACTGCACTCG
AAACAAAAGAGCTTTGCATATGTATCCTCTTGACCATCGAAGCCGTGTCC
CCACCCGCGGTCCTTCTACGATCACCGCAGGGAATATTCGCCGACGATGA
GTGCTGGTACATCGTCATGGAGCTGGCGGAAGGAGGCGAGCTCTACGACC
GGCTAACCACGGAGGGCGTTCTCTTGAAGGAGCGCGACGTCTGCTCTGTG
CTGCGAGAGACGGCGGACGCGCTAGCCTACATGCACGACCGAGGGATCGT
GCACGGAGACATCAAGCCGGAGAACATGTTGCTGACGAACCCGGCGCCCG
CCGCCGTCGGCACGGCGGGCGAACACGTCGTTGAGAGGGACACCACGACA
GTGCCAGGGGCAAGGGCTGTTGGCGAAGAGGGTGGGG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig11646:3245..6281-

>mRNA_S-dermatodea_contig11646.1048.1 ID=mRNA_S-dermatodea_contig11646.1048.1|Name=mRNA_S-dermatodea_contig11646.1048.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1338bp|location=Sequence derived from alignment at S-dermatodea_contig11646:3245..6281- (Saccorhiza dermatodea SderLu1190fm monoicous)
TTTTGGCGGGCGACCCCGGCGCAGGCTCGGTATGGCGGACTGGCGGCGGC
CGTGGCGGGATCGGTGGGTCTGCTGACGCTGTGGCAGCTGGAGAGGATAG
AGGAGCTGCTGCTGCCGACGCTCGGGGAGCAGGAGCTGGGATCGTCACCG
AAAAGAATAGAAGACTTTTGGCGGGCGACCCCGGCGCAGGCTCGGTATGG
CGGACTGGCGGCGGCCGTGGCGGGATCGGTGGGTCTGCTGACGCTGTGGC
AGCTGGAGAGGATAGAGGAGCTGCTGCTGCCGACGCTCGGGGAGCAGGAG
CTGGGATCGTCACCGAAAAGAATAGAAGACTTTTACGCCTTCCAGAACGA
AGACACCGAAGTCGGCCGCGGTCAGTACGGTACCGTCTCAACCGCGGTAG
ACAGGGCGACGGGAGAGGTGGTGGCCGTGAAACGCGTGCCGCGGGAAAAC
GCGACGGAGGCCAACTTTCGTGAGGAGGCGGAGGCGCACCGGGAGGCGGG
GAGCCACCCCAACGTCGTCGGCTTGAAGTTTTACGCCTTCCAGAACGAAG
ACACCGAAGTCGGCCGCGGTCAGTACGGTACCGTCTCAACCGCGGTAGAC
AGGGCGACGGGAGAGGTGGTGGCCGTGAAACGCGTGCCGCGGGAAAACGC
GACGGAGGCCAACTTTCGTGAGGAGGCGGAGGCGCACCGGGAGGCGGGGA
GCCACCCCAACGTCGTCGGCTTGAAGGGAATATTCGCCGACGATGAGTGC
TGGTACATCGTCATGGAGCTGGCGGAAGGAGGCGAGCTCTACGACCGGCT
AACCACGGAGGGCGTTCTCTTGAAGGAGCGCGACGTCTGCTCTGTGCTGC
GAGAGACGGCGGACGCGCTAGCCTACATGCACGACCGAGGGATCGTGCAC
GGAGACATCAAGCCGGAGAACATGTTGCTGACGAACCCGGCGCCCGCCGC
CGTCGGCACGGCGGGCGAACACGTCGTTGAGAGGGACACCACGACAGTGC
CAGGGGCAAGGGCTGTTGGCGAAGAGGGTGGGGGAATATTCGCCGACGAT
GAGTGCTGGTACATCGTCATGGAGCTGGCGGAAGGAGGCGAGCTCTACGA
CCGGCTAACCACGGAGGGCGTTCTCTTGAAGGAGCGCGACGTCTGCTCTG
TGCTGCGAGAGACGGCGGACGCGCTAGCCTACATGCACGACCGAGGGATC
GTGCACGGAGACATCAAGCCGGAGAACATGTTGCTGACGAACCCGGCGCC
CGCCGCCGTCGGCACGGCGGGCGAACACGTCGTTGAGAGGGACACCACGA
CAGTGCCAGGGGCAAGGGCTGTTGGCGAAGAGGGTGGG
back to top