mRNA_S-dermatodea_contig11641.1045.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11641.1045.1
Unique NamemRNA_S-dermatodea_contig11641.1045.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11641.1045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11641contigS-dermatodea_contig11641:3871..4233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size363
Cds size345
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924211.8951468-UTR-S-dermatodea_contig11641:3870..38881622924211.8951468-UTR-S-dermatodea_contig11641:3870..3888Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11641 3871..3888 +
1694079096.4148607-UTR-S-dermatodea_contig11641:3870..38881694079096.4148607-UTR-S-dermatodea_contig11641:3870..3888Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11641 3871..3888 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924211.9036546-CDS-S-dermatodea_contig11641:3888..42331622924211.9036546-CDS-S-dermatodea_contig11641:3888..4233Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11641 3889..4233 +
1694079096.4233136-CDS-S-dermatodea_contig11641:3888..42331694079096.4233136-CDS-S-dermatodea_contig11641:3888..4233Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11641 3889..4233 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11641.1045.1prot_S-dermatodea_contig11641.1045.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11641 3889..4233 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11641.1045.1

>prot_S-dermatodea_contig11641.1045.1 ID=prot_S-dermatodea_contig11641.1045.1|Name=mRNA_S-dermatodea_contig11641.1045.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=115bp
MGLKRVGPPRPSIPRRRLGRPKRSSSGYVPRCGMFVLVAVLVVIGFEFLL
MHGHNNPGRPHFFAHHNDSVAFDTTTPHRQDISAAPGATKLPKEPSLPDS
PRAPSGGTGGTWTLA
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mRNA from alignment at S-dermatodea_contig11641:3871..4233+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11641.1045.1 ID=mRNA_S-dermatodea_contig11641.1045.1|Name=mRNA_S-dermatodea_contig11641.1045.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=363bp|location=Sequence derived from alignment at S-dermatodea_contig11641:3871..4233+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCCAGCCCCCCCCTACCATGGGACTGAAGAGGGTGGGGCCGCCGAGGCC
GTCCATCCCGCGTCGTCGCCTCGGCCGTCCAAAGAGATCCTCGTCTGGCT
ACGTCCCGAGATGCGGAATGTTTGTCCTAGTAGCTGTATTGGTGGTCATC
GGCTTTGAGTTCCTGCTGATGCACGGGCACAACAACCCAGGCCGGCCGCA
CTTTTTCGCCCACCACAACGACAGCGTGGCCTTCGACACCACCACGCCGC
ACCGCCAGGACATCAGCGCAGCGCCCGGCGCCACCAAGCTGCCCAAGGAG
CCCTCCCTACCGGACTCGCCTCGGGCACCATCTGGAGGCACAGGCGGAAC
ATGGACACTTGCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig11641:3871..4233+

>mRNA_S-dermatodea_contig11641.1045.1 ID=mRNA_S-dermatodea_contig11641.1045.1|Name=mRNA_S-dermatodea_contig11641.1045.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at S-dermatodea_contig11641:3871..4233+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGACTGAAGAGGGTGGGGCCGCCGAGGCCGTCCATCCCGCGTCGTCG
CCTCGGCCGTCCAAAGAGATCCTCGTCTGGCTACGTCCCGAGATGCGGAA
TGTTTGTCCTAGTAGCTGTATTGGTGGTCATCGGCTTTGAGTTCCTGCTG
ATGCACGGGCACAACAACCCAGGCCGGCCGCACTTTTTCGCCCACCACAA
CGACAGCGTGGCCTTCGACACCACCACGCCGCACCGCCAGGACATCAGCG
CAGCGCCCGGCGCCACCAAGCTGCCCAAGGAGCCCTCCCTACCGGACTCG
CCTCGGGCACCATCTGGAGGCACAGGCGGAACATGGACACTTGCCATGGG
ACTGAAGAGGGTGGGGCCGCCGAGGCCGTCCATCCCGCGTCGTCGCCTCG
GCCGTCCAAAGAGATCCTCGTCTGGCTACGTCCCGAGATGCGGAATGTTT
GTCCTAGTAGCTGTATTGGTGGTCATCGGCTTTGAGTTCCTGCTGATGCA
CGGGCACAACAACCCAGGCCGGCCGCACTTTTTCGCCCACCACAACGACA
GCGTGGCCTTCGACACCACCACGCCGCACCGCCAGGACATCAGCGCAGCG
CCCGGCGCCACCAAGCTGCCCAAGGAGCCCTCCCTACCGGACTCGCCTCG
GGCACCATCTGGAGGCACAGGCGGAACATGGACACTTGCC
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