mRNA_S-dermatodea_contig1164.1043.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1164.1043.1
Unique NamemRNA_S-dermatodea_contig1164.1043.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1164.1043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1164contigS-dermatodea_contig1164:14505..15231 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size313
Cds size165
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1164.1043.1prot_S-dermatodea_contig1164.1043.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1164 14571..15149 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924211.7086904-UTR-S-dermatodea_contig1164:14504..145701622924211.7086904-UTR-S-dermatodea_contig1164:14504..14570Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1164 14505..14570 -
1694079096.3039043-UTR-S-dermatodea_contig1164:14504..145701694079096.3039043-UTR-S-dermatodea_contig1164:14504..14570Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1164 14505..14570 -
1622924211.7390604-UTR-S-dermatodea_contig1164:15149..152311622924211.7390604-UTR-S-dermatodea_contig1164:15149..15231Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1164 15150..15231 -
1694079096.3259366-UTR-S-dermatodea_contig1164:15149..152311694079096.3259366-UTR-S-dermatodea_contig1164:15149..15231Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1164 15150..15231 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924211.7184212-CDS-S-dermatodea_contig1164:14570..145761622924211.7184212-CDS-S-dermatodea_contig1164:14570..14576Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1164 14571..14576 -
1694079096.311251-CDS-S-dermatodea_contig1164:14570..145761694079096.311251-CDS-S-dermatodea_contig1164:14570..14576Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1164 14571..14576 -
1622924211.727787-CDS-S-dermatodea_contig1164:14990..151491622924211.727787-CDS-S-dermatodea_contig1164:14990..15149Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1164 14991..15149 -
1694079096.3185701-CDS-S-dermatodea_contig1164:14990..151491694079096.3185701-CDS-S-dermatodea_contig1164:14990..15149Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1164 14991..15149 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1164.1043.1

>prot_S-dermatodea_contig1164.1043.1 ID=prot_S-dermatodea_contig1164.1043.1|Name=mRNA_S-dermatodea_contig1164.1043.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=55bp
MAPTSIPGRANRNSSAQRGGVPGEAERVRVIGDGARGAMIWGCKYVDKSS
TLQD*
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mRNA from alignment at S-dermatodea_contig1164:14505..15231-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1164.1043.1 ID=mRNA_S-dermatodea_contig1164.1043.1|Name=mRNA_S-dermatodea_contig1164.1043.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=727bp|location=Sequence derived from alignment at S-dermatodea_contig1164:14505..15231- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGCGTTGACCGCAAGAGGGACCGTTCAGGGCGACCCATGGCCTAGGTGT
CACGGAGACGCTCAGGATGTGCGCCGTGGATAATGGCTCCGACTTCCATC
CCTGGAAGGGCCAACCGGAATTCCAGCGCTCAACGCGGCGGAGTACCGGG
GGAAGCTGAACGAGTACGTGTCATCGGAGACGGCGCACGTGGTGCTATGA
TATGGGGTTGCAAATATGTGGACAAGAGCAGTACCTTGCAGGTGAGCCGT
ACCCGTGCTTTAAAAACAAAACATAGAACACACTCAACGCGTAGGTGGAT
GTTTTTGCAATTGCGTGGTGCGTGTGGTTTTCTCTCCACCACCGGTTCGT
TCCTTCCGGGGGACTCTGCGCCAGCCGATACTGCAGTTGGGAAGGGGCAG
AGGCAAGCTGGAGTTTCGAAGGTGTGGCGCTCCACATTTTGTTGAGAGTA
CAGCAGTATCATAGTGTTTTGGGTATTGCAGTTGCTGGGTGCTATCTCCA
ACAGCCGTAATGTTCGTTCGCCCTGTGCCAGTTACAAGGGTATTCCGAGA
CTTACAAGTATAACTGTTTGCCGATCGCGGCCTTCTTTCTAGGTCTAGTG
CTATCGACGACGCAGTCCGACCCTGAGACGTGCCCCCTCACACAACCCTT
TGCAGGACTAGATGCGGGCTCGCGGGCCGTGGGGGTGCCTATTCGCCGAG
GTGGGCTCAACCAAGCAACTACTCCAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig1164:14505..15231-

>mRNA_S-dermatodea_contig1164.1043.1 ID=mRNA_S-dermatodea_contig1164.1043.1|Name=mRNA_S-dermatodea_contig1164.1043.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at S-dermatodea_contig1164:14505..15231- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCTCCGACTTCCATCCCTGGAAGGGCCAACCGGAATTCCAGCGCTCA
ACGCGGCGGAGTACCGGGGGAAGCTGAACGAGTACGTGTCATCGGAGACG
GCGCACGTGGTGCTATGATATGGGGTTGCAAATATGTGGACAAGAGCAGT
ACCTTGCAGATGGCTCCGACTTCCATCCCTGGAAGGGCCAACCGGAATTC
CAGCGCTCAACGCGGCGGAGTACCGGGGGAAGCTGAACGAGTACGTGTCA
TCGGAGACGGCGCACGTGGTGCTATGATATGGGGTTGCAAATATGTGGAC
AAGAGCAGTACCTTGCAGGACTAGGACTAG
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