mRNA_S-dermatodea_contig11634.1040.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11634.1040.1
Unique NamemRNA_S-dermatodea_contig11634.1040.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11634.1040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11634contigS-dermatodea_contig11634:5793..6217 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size425
Cds size309
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924211.563125-UTR-S-dermatodea_contig11634:5792..59081622924211.563125-UTR-S-dermatodea_contig11634:5792..5908Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11634 5793..5908 +
1694079096.2285259-UTR-S-dermatodea_contig11634:5792..59081694079096.2285259-UTR-S-dermatodea_contig11634:5792..5908Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11634 5793..5908 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924211.5720165-CDS-S-dermatodea_contig11634:5908..62171622924211.5720165-CDS-S-dermatodea_contig11634:5908..6217Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11634 5909..6217 +
1694079096.241366-CDS-S-dermatodea_contig11634:5908..62171694079096.241366-CDS-S-dermatodea_contig11634:5908..6217Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11634 5909..6217 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11634.1040.1prot_S-dermatodea_contig11634.1040.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11634 5909..6217 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11634.1040.1

>prot_S-dermatodea_contig11634.1040.1 ID=prot_S-dermatodea_contig11634.1040.1|Name=mRNA_S-dermatodea_contig11634.1040.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=103bp
MCTRSGPGRARFCRDLLRKYYSHHFRFSVYNLGILLIIIIAFLVEAGVGY
LATQFACRMGRVNEETLFGRAAVEAHPPGQVSRFVFSCTGCVNNEFELKG
LGD
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mRNA from alignment at S-dermatodea_contig11634:5793..6217+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11634.1040.1 ID=mRNA_S-dermatodea_contig11634.1040.1|Name=mRNA_S-dermatodea_contig11634.1040.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=425bp|location=Sequence derived from alignment at S-dermatodea_contig11634:5793..6217+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCATGTGGGGTGATGCTGGGGGGGGGGGGAGTCCCCACCGGTGTATGGT
CTTCCATTTTTTTGTGCTTGCGATTTCATTGCGAGCAAAATGTAAAGCAA
TCGTGGGTGACGGAATATGTGTACGCGCAGTGGCCCAGGCCGGGCACGTT
TTTGTCGAGATTTGTTGAGAAAGTATTACTCCCACCATTTTAGGTTTTCG
GTTTATAACCTGGGTATTTTATTAATAATAATAATAGCATTTCTCGTCGA
GGCTGGTGTTGGATACCTGGCGACTCAATTCGCGTGTCGGATGGGACGCG
TGAATGAAGAAACGCTGTTTGGACGGGCTGCCGTCGAGGCGCATCCGCCT
GGCCAAGTTTCCCGATTTGTTTTTTCATGTACCGGTTGTGTGAACAATGA
GTTTGAGTTGAAAGGGCTAGGGGAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig11634:5793..6217+

>mRNA_S-dermatodea_contig11634.1040.1 ID=mRNA_S-dermatodea_contig11634.1040.1|Name=mRNA_S-dermatodea_contig11634.1040.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at S-dermatodea_contig11634:5793..6217+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTGTACGCGCAGTGGCCCAGGCCGGGCACGTTTTTGTCGAGATTTGTT
GAGAAAGTATTACTCCCACCATTTTAGGTTTTCGGTTTATAACCTGGGTA
TTTTATTAATAATAATAATAGCATTTCTCGTCGAGGCTGGTGTTGGATAC
CTGGCGACTCAATTCGCGTGTCGGATGGGACGCGTGAATGAAGAAACGCT
GTTTGGACGGGCTGCCGTCGAGGCGCATCCGCCTGGCCAAGTTTCCCGAT
TTGTTTTTTCATGTACCGGTTGTGTGAACAATGAGTTTGAGTTGAAAGGG
CTAGGGGACATGTGTACGCGCAGTGGCCCAGGCCGGGCACGTTTTTGTCG
AGATTTGTTGAGAAAGTATTACTCCCACCATTTTAGGTTTTCGGTTTATA
ACCTGGGTATTTTATTAATAATAATAATAGCATTTCTCGTCGAGGCTGGT
GTTGGATACCTGGCGACTCAATTCGCGTGTCGGATGGGACGCGTGAATGA
AGAAACGCTGTTTGGACGGGCTGCCGTCGAGGCGCATCCGCCTGGCCAAG
TTTCCCGATTTGTTTTTTCATGTACCGGTTGTGTGAACAATGAGTTTGAG
TTGAAAGGGCTAGGGGAC
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