mRNA_S-dermatodea_contig11634.1039.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11634.1039.1
Unique NamemRNA_S-dermatodea_contig11634.1039.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11634.1039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11634contigS-dermatodea_contig11634:4949..5564 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size616
Cds size333
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11634.1039.1prot_S-dermatodea_contig11634.1039.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11634 5078..5410 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924211.5118072-UTR-S-dermatodea_contig11634:4948..50771622924211.5118072-UTR-S-dermatodea_contig11634:4948..5077Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11634 4949..5077 +
1694079096.1964421-UTR-S-dermatodea_contig11634:4948..50771694079096.1964421-UTR-S-dermatodea_contig11634:4948..5077Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11634 4949..5077 +
1622924211.5324576-UTR-S-dermatodea_contig11634:5410..55641622924211.5324576-UTR-S-dermatodea_contig11634:5410..5564Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11634 5411..5564 +
1694079096.213066-UTR-S-dermatodea_contig11634:5410..55641694079096.213066-UTR-S-dermatodea_contig11634:5410..5564Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11634 5411..5564 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924211.522778-CDS-S-dermatodea_contig11634:5077..54101622924211.522778-CDS-S-dermatodea_contig11634:5077..5410Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11634 5078..5410 +
1694079096.2045567-CDS-S-dermatodea_contig11634:5077..54101694079096.2045567-CDS-S-dermatodea_contig11634:5077..5410Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11634 5078..5410 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11634.1039.1

>prot_S-dermatodea_contig11634.1039.1 ID=prot_S-dermatodea_contig11634.1039.1|Name=mRNA_S-dermatodea_contig11634.1039.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=111bp
MGVCLMSFAIESQLYRASSYFWTQVYSFPAAVAGFGRSRGTTRDPLPIRA
VCKNGRCRCVIRSPLRGKCCMLSFGLWAWYPQPPREHYSLLVPALAGMVC
FDAASRVRFG*
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mRNA from alignment at S-dermatodea_contig11634:4949..5564+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11634.1039.1 ID=mRNA_S-dermatodea_contig11634.1039.1|Name=mRNA_S-dermatodea_contig11634.1039.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=616bp|location=Sequence derived from alignment at S-dermatodea_contig11634:4949..5564+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCGATGTGTATGGCCGAATGCATCAAAACAACTCGGCGACCTGGTGGCA
GCGTAGTCAGAGGTGCCCGGATGCCTCCGTGGCCCAATAAACCGCGGACG
GACGTCTGACGAGTGTAGGGTGTCACAAAATGGGTGTGTGTCTCATGAGC
TTTGCGATCGAGAGCCAACTTTACAGGGCAAGCAGTTATTTCTGGACACA
AGTTTACAGTTTTCCCGCTGCGGTGGCCGGTTTCGGAAGATCACGAGGTA
CGACTCGAGACCCCTTGCCCATACGGGCCGTGTGCAAAAACGGAAGATGC
CGTTGTGTGATAAGATCGCCGCTTCGTGGCAAGTGTTGTATGTTGAGCTT
CGGCTTGTGGGCATGGTACCCGCAGCCTCCCCGCGAGCACTATTCGCTAC
TCGTCCCAGCCCTTGCAGGCATGGTCTGCTTCGATGCTGCCTCACGCGTT
CGTTTTGGCTGAGAGCAGGGCAGGATTCAACCGAGTCCAGGTGTTCCACG
CACCATGTACAAAAATGACCGATCGGGTTTGCCACGTGCAAACCGCTCCA
GCAGCTAGGAGTTGCTATACAGAAAACGATTCGTTAGTGACGGAGGCGGG
CTGGGCTTAGCGAAGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig11634:4949..5564+

>mRNA_S-dermatodea_contig11634.1039.1 ID=mRNA_S-dermatodea_contig11634.1039.1|Name=mRNA_S-dermatodea_contig11634.1039.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at S-dermatodea_contig11634:4949..5564+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGTGTGTGTCTCATGAGCTTTGCGATCGAGAGCCAACTTTACAGGGC
AAGCAGTTATTTCTGGACACAAGTTTACAGTTTTCCCGCTGCGGTGGCCG
GTTTCGGAAGATCACGAGGTACGACTCGAGACCCCTTGCCCATACGGGCC
GTGTGCAAAAACGGAAGATGCCGTTGTGTGATAAGATCGCCGCTTCGTGG
CAAGTGTTGTATGTTGAGCTTCGGCTTGTGGGCATGGTACCCGCAGCCTC
CCCGCGAGCACTATTCGCTACTCGTCCCAGCCCTTGCAGGCATGGTCTGC
TTCGATGCTGCCTCACGCGTTCGTTTTGGCTGAATGGGTGTGTGTCTCAT
GAGCTTTGCGATCGAGAGCCAACTTTACAGGGCAAGCAGTTATTTCTGGA
CACAAGTTTACAGTTTTCCCGCTGCGGTGGCCGGTTTCGGAAGATCACGA
GGTACGACTCGAGACCCCTTGCCCATACGGGCCGTGTGCAAAAACGGAAG
ATGCCGTTGTGTGATAAGATCGCCGCTTCGTGGCAAGTGTTGTATGTTGA
GCTTCGGCTTGTGGGCATGGTACCCGCAGCCTCCCCGCGAGCACTATTCG
CTACTCGTCCCAGCCCTTGCAGGCATGGTCTGCTTCGATGCTGCCTCACG
CGTTCGTTTTGGCTGA
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