mRNA_S-dermatodea_contig11632.1037.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11632.1037.1
Unique NamemRNA_S-dermatodea_contig11632.1037.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11632.1037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11632contigS-dermatodea_contig11632:3129..3793 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionENTH/VHS
Ec32 orthologEc-12_003780.1
Exons2
Model size254
Cds size246
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11632.1037.1prot_S-dermatodea_contig11632.1037.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11632 3129..3785 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924211.464086-CDS-S-dermatodea_contig11632:3128..32821622924211.464086-CDS-S-dermatodea_contig11632:3128..3282Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11632 3129..3282 -
1694079096.1678083-CDS-S-dermatodea_contig11632:3128..32821694079096.1678083-CDS-S-dermatodea_contig11632:3128..3282Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11632 3129..3282 -
1622924211.4723914-CDS-S-dermatodea_contig11632:3693..37851622924211.4723914-CDS-S-dermatodea_contig11632:3693..3785Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11632 3694..3785 -
1694079096.1806285-CDS-S-dermatodea_contig11632:3693..37851694079096.1806285-CDS-S-dermatodea_contig11632:3693..3785Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11632 3694..3785 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924211.4799304-UTR-S-dermatodea_contig11632:3785..37931622924211.4799304-UTR-S-dermatodea_contig11632:3785..3793Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11632 3786..3793 -
1694079096.188899-UTR-S-dermatodea_contig11632:3785..37931694079096.188899-UTR-S-dermatodea_contig11632:3785..3793Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11632 3786..3793 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11632.1037.1

>prot_S-dermatodea_contig11632.1037.1 ID=prot_S-dermatodea_contig11632.1037.1|Name=mRNA_S-dermatodea_contig11632.1037.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=82bp
MEWSLTTTAADGDASLVVPALRERYKVLTSRLLPLLSDWIHTLSHVEFDE
DDTALTATANRDGVETLSGRDATSHPGTPAAG
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mRNA from alignment at S-dermatodea_contig11632:3129..3793-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11632.1037.1 ID=mRNA_S-dermatodea_contig11632.1037.1|Name=mRNA_S-dermatodea_contig11632.1037.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=665bp|location=Sequence derived from alignment at S-dermatodea_contig11632:3129..3793- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGTCCCGATGGAGTGGAGCTTAACGACCACCGCCGCCGACGGCGACGCC
TCCCTGGTGGTACCCGCTCTGCGCGAGCGTTACAAGGTGTTGACGTCTCG
GTGAGTTGTCGCTGTCCTCTTGTCAGCACGCAAGCAGCGTGTGCATCCGG
GGGTGCTTGATTTACGGACGGACGGAGAGGCCGCCCGTGACTCGGCCAGC
AGAAAGCAGTCCGGGTTTTAGTTGCAGCAAAGCCGTCCAATCGCTTCTCG
ATTCAAGCTCGGGGAGGGGGGGGGGGTTTCGGGTGAGGGTATGGCGACAT
TGATGAACCAACAAATGGCCCTCCGGGGAGTGAGATGAAGTGAGCGAGCC
TTGGTTGCGACAGCGCAGAGACGAACATGCCGAGCGCCCCGCCCCAACTC
TCACGCGCTACCGTTCGTCCGTTCCCGCGTTCCACCATTAACCACGGACC
GCGTCACCCTGCGTCTCTTTTTCGCGCGTCGGCCCGCTTTCCCGACAACT
CCTCCTACAAGGCTCCTACCGCTCCTGTCGGACTGGATACACACGCTCAG
CCACGTGGAGTTCGACGAAGATGACACCGCCCTTACCGCCACCGCCAACC
GCGACGGCGTGGAAACCCTTTCCGGCAGGGACGCCACCTCGCACCCGGGA
ACCCCTGCTGCCGGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig11632:3129..3793-

>mRNA_S-dermatodea_contig11632.1037.1 ID=mRNA_S-dermatodea_contig11632.1037.1|Name=mRNA_S-dermatodea_contig11632.1037.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at S-dermatodea_contig11632:3129..3793- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAGTGGAGCTTAACGACCACCGCCGCCGACGGCGACGCCTCCCTGGT
GGTACCCGCTCTGCGCGAGCGTTACAAGGTGTTGACGTCTCGATGGAGTG
GAGCTTAACGACCACCGCCGCCGACGGCGACGCCTCCCTGGTGGTACCCG
CTCTGCGCGAGCGTTACAAGGTGTTGACGTCTCGGCTCCTACCGCTCCTG
TCGGACTGGATACACACGCTCAGCCACGTGGAGTTCGACGAAGATGACAC
CGCCCTTACCGCCACCGCCAACCGCGACGGCGTGGAAACCCTTTCCGGCA
GGGACGCCACCTCGCACCCGGGAACCCCTGCTGCCGGCGCTCCTACCGCT
CCTGTCGGACTGGATACACACGCTCAGCCACGTGGAGTTCGACGAAGATG
ACACCGCCCTTACCGCCACCGCCAACCGCGACGGCGTGGAAACCCTTTCC
GGCAGGGACGCCACCTCGCACCCGGGAACCCCTGCTGCCGGC
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