mRNA_S-dermatodea_contig11614.1028.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11614.1028.1
Unique NamemRNA_S-dermatodea_contig11614.1028.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11614.1028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11614contigS-dermatodea_contig11614:3047..3656 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size612
Cds size438
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924210.8111992-CDS-S-dermatodea_contig11614:3046..34841622924210.8111992-CDS-S-dermatodea_contig11614:3046..3484Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11614 3047..3484 +
1694079095.6471434-CDS-S-dermatodea_contig11614:3046..34841694079095.6471434-CDS-S-dermatodea_contig11614:3046..3484Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11614 3047..3484 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924210.8198853-UTR-S-dermatodea_contig11614:3484..36561622924210.8198853-UTR-S-dermatodea_contig11614:3484..3656Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11614 3485..3656 +
1694079095.656848-UTR-S-dermatodea_contig11614:3484..36561694079095.656848-UTR-S-dermatodea_contig11614:3484..3656Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11614 3485..3656 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11614.1028.1prot_S-dermatodea_contig11614.1028.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11614 3047..3484 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11614.1028.1

>prot_S-dermatodea_contig11614.1028.1 ID=prot_S-dermatodea_contig11614.1028.1|Name=mRNA_S-dermatodea_contig11614.1028.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=146bp
PSNAAAGAEELACGRGEACSSNVAVASGPAEEENPLGSGPGSDRWTFKPV
RDVVRNSDADAGDDAVDDNVVNKSPQKVIGRVCLDGTSPEVSPSSAPSSR
KQRLLRESTSRRLTRETGVGEGGSGMSTWSTNSPSPVLNEPGVDM*
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mRNA from alignment at S-dermatodea_contig11614:3047..3656+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11614.1028.1 ID=mRNA_S-dermatodea_contig11614.1028.1|Name=mRNA_S-dermatodea_contig11614.1028.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=610bp|location=Sequence derived from alignment at S-dermatodea_contig11614:3047..3656+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGAGTAATGCCGCGGCGGGGGCGGAAGAGCTTGCCTGCGGCCGAGGAGA
GGCTTGCAGCTCGAACGTCGCCGTGGCGAGCGGTCCAGCAGAAGAAGAGA
ACCCTCTCGGATCCGGGCCCGGATCCGATCGGTGGACTTTCAAGCCGGTA
AGGGACGTAGTGAGAAACAGCGATGCCGATGCTGGCGATGACGCCGTGGA
CGATAACGTTGTCAATAAAAGCCCGCAGAAGGTGATCGGGAGAGTTTGCC
TGGACGGGACGTCTCCGGAAGTGAGCCCCTCCTCGGCGCCTTCCAGCCGC
AAGCAGCGGCTGCTGAGGGAGTCGACGTCCCGGCGGCTGACTAGGGAGAC
GGGCGTCGGCGAGGGCGGGTCCGGCATGTCCACGTGGAGCACGAACTCGC
CCTCTCCCGTGCTGAACGAGCCGGGGGTTGATATGTGACGGCAACCGAGC
GCCAGCCAATCCGCATTGCTCGGTGACGTTGTGTTCTGTTCTGTTGTGGG
CGGGGCCGTTCACGACGTGTTCGAGCTTTTTTTGTTTCGTGGGCCGAGCG
AGAGCTTTCGGGGGCTGTGCGAACGAATTTGTTTGTGTTTTGCACATAAA
ATATGCGCGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11614:3047..3656+

>mRNA_S-dermatodea_contig11614.1028.1 ID=mRNA_S-dermatodea_contig11614.1028.1|Name=mRNA_S-dermatodea_contig11614.1028.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=876bp|location=Sequence derived from alignment at S-dermatodea_contig11614:3047..3656+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGAGTAATGCCGCGGCGGGGGCGGAAGAGCTTGCCTGCGGCCGAGGAGA
GGCTTGCAGCTCGAACGTCGCCGTGGCGAGCGGTCCAGCAGAAGAAGAGA
ACCCTCTCGGATCCGGGCCCGGATCCGATCGGTGGACTTTCAAGCCGGTA
AGGGACGTAGTGAGAAACAGCGATGCCGATGCTGGCGATGACGCCGTGGA
CGATAACGTTGTCAATAAAAGCCCGCAGAAGGTGATCGGGAGAGTTTGCC
TGGACGGGACGTCTCCGGAAGTGAGCCCCTCCTCGGCGCCTTCCAGCCGC
AAGCAGCGGCTGCTGAGGGAGTCGACGTCCCGGCGGCTGACTAGGGAGAC
GGGCGTCGGCGAGGGCGGGTCCGGCATGTCCACGTGGAGCACGAACTCGC
CCTCTCCCGTGCTGAACGAGCCGGGGGTTGATATGTGACCGAGTAATGCC
GCGGCGGGGGCGGAAGAGCTTGCCTGCGGCCGAGGAGAGGCTTGCAGCTC
GAACGTCGCCGTGGCGAGCGGTCCAGCAGAAGAAGAGAACCCTCTCGGAT
CCGGGCCCGGATCCGATCGGTGGACTTTCAAGCCGGTAAGGGACGTAGTG
AGAAACAGCGATGCCGATGCTGGCGATGACGCCGTGGACGATAACGTTGT
CAATAAAAGCCCGCAGAAGGTGATCGGGAGAGTTTGCCTGGACGGGACGT
CTCCGGAAGTGAGCCCCTCCTCGGCGCCTTCCAGCCGCAAGCAGCGGCTG
CTGAGGGAGTCGACGTCCCGGCGGCTGACTAGGGAGACGGGCGTCGGCGA
GGGCGGGTCCGGCATGTCCACGTGGAGCACGAACTCGCCCTCTCCCGTGC
TGAACGAGCCGGGGGTTGATATGTGA
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