prot_S-dermatodea_contig11611.1026.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig11611.1026.1
Unique Nameprot_S-dermatodea_contig11611.1026.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length459
Homology
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BLAST of mRNA_S-dermatodea_contig11611.1026.1 vs. uniprot
Match: D7G0H0_ECTSI (F-box domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0H0_ECTSI)

HSP 1 Score: 325 bits (834), Expect = 1.560e-100
Identity = 226/502 (45.02%), Postives = 250/502 (49.80%), Query Frame = 0 
Query:    1 QTRVAVCEPAALAGGXXXXXNAHGSRWARRRRLGDLAADXXXXXXXXXXXXXXXXXXXXXXXX-AAGFPVHVSCMAISGGVIATAAGPEITVWDSEEA-APRARFKVSGHGSVTCLLLRDGTLLAGDNSGYLRSYDVSIPEG-RSLHEIRTHADRVTAIDAFTLPAEDNEGGHSRGGEQGXXXXXXXXXXXXXXXXXXXXXXXXXXXGPRRWDQGHGWGEGWVVDGESAGTTT------------TGASSAVAAIDRFAAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMAPRQRQPGGTT---LQYAASVGGGMGAGRGYGRARLGKRQGYAGRGQREDPRGPETGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------------TGSDDGTAKAWDAETGRFVCVYAGHTRGVTCLEATSTESYGPVLVTGGGDSAVIIWELTTGRCLEKLETGAGLPGNPGGPGPRIGCLQ 459
            QTRVAV EP++             +R A RRR+G+  A                          AAGFPVH+SCMAI+G VIATAAGPEITVWD E A APRARFKVSGHGSVTCLLLR GTLLAGDNSGYLRSYDVS+P G R LHEIR HADRVTAID+FTLP  +     S   EQ                            G  RWDQGH WGEGW  +   +G               +GASS          +                             G +P      G     L+  +S GGG G       +RLGKRQGYAGRGQ  +P G   G                                                                 T SDDGTAKAWDA +GRFVC+YAGHTRGVTCL+AT TESYGPVLVTGGGDSAVI+WELTTGRCLEKLETGAGL  NPGGPGPR+GCLQ
Sbjct:  135 QTRVAVSEPSSP------------TRTASRRRVGEATATGGGRDQGHGGARGEEGPAGGGAVAVAAGFPVHISCMAINGAVIATAAGPEITVWDMEGASAPRARFKVSGHGSVTCLLLRSGTLLAGDNSGYLRSYDVSVPGGGRPLHEIRAHADRVTAIDSFTLPVGNTAAADSPVAEQPGGGSGGCYRSPAAEGEGGAWGRGGGQRG--RWDQGHXWGEGWQEEESESGEGAQPLLPQRHLYGNSGASSY---------SPPPHASWGAAGEGAGSRQQHGIGGGTGALGESPASAADLGVEFNRLRRGSSHGGGTGEPL----SRLGKRQGYAGRGQAYEPAGAAVGGGTRMQGRGRGIDRAGWAFDDGNNHGAPNAWSEEKGGEENDPFVGQRPDDGKGGAGGEQREVLLFTASDDGTAKAWDARSGRFVCLYAGHTRGVTCLQATLTESYGPVLVTGGGDSAVIVWELTTGRCLEKLETGAGLVINPGGPGPRVGCLQ 609
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11611.1026.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0H0_ECTSI1.560e-10045.02F-box domain-containing protein n=2 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 386..428
e-value: 2.7E-4
score: 30.3
coord: 324..383
e-value: 40.0
score: 6.9
coord: 96..134
e-value: 74.0
score: 5.2
IPR001680WD40 repeatPFAMPF00400WD40coord: 390..427
e-value: 0.013
score: 16.3
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 393..437
score: 11.879
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 369..392
score: 8.737
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 63..170
e-value: 7.5E-9
score: 36.7
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 366..445
e-value: 2.9E-17
score: 64.9
NoneNo IPR availablePANTHERPTHR44129FAMILY NOT NAMEDcoord: 368..438
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 370..384
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 415..429
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 369..437
score: 15.979
IPR011047Quinoprotein alcohol dehydrogenase-like superfamilySUPERFAMILY50998Quinoprotein alcohol dehydrogenase-likecoord: 70..443

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11611contigS-dermatodea_contig11611:1244..6826 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11611.1026.1mRNA_S-dermatodea_contig11611.1026.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig11611 1244..6826 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig11611.1026.1 ID=prot_S-dermatodea_contig11611.1026.1|Name=mRNA_S-dermatodea_contig11611.1026.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=459bp
QTRVAVCEPAALAGGGGSGGNAHGSRWARRRRLGDLAADAAAARGGSSAA
GAGRGAGGGGGGGAAGFPVHVSCMAISGGVIATAAGPEITVWDSEEAAPR
ARFKVSGHGSVTCLLLRDGTLLAGDNSGYLRSYDVSIPEGRSLHEIRTHA
DRVTAIDAFTLPAEDNEGGHSRGGEQGRKGKGGGSGASARGTDATGAAGG
GGTGGPRRWDQGHGWGEGWVVDGESAGTTTTGASSAVAAIDRFAAARAAA
DAVAAAASALVGGGAGGGGAGAGAGGMAPRQRQPGGTTLQYAASVGGGMG
AGRGYGRARLGKRQGYAGRGQREDPRGPETGEGQRGWGIGRVLGAAAVGE
GEGGTEAVEGKGEGWGKTLLFTGSDDGTAKAWDAETGRFVCVYAGHTRGV
TCLEATSTESYGPVLVTGGGDSAVIIWELTTGRCLEKLETGAGLPGNPGG
PGPRIGCLQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR011047Quinoprotein_ADH-like_supfam