mRNA_S-dermatodea_contig11609.1025.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11609.1025.1
Unique NamemRNA_S-dermatodea_contig11609.1025.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11609.1025.1 vs. uniprot
Match: D8LN52_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN52_ECTSI)

HSP 1 Score: 366 bits (939), Expect = 8.400e-118
Identity = 166/245 (67.76%), Postives = 189/245 (77.14%), Query Frame = 1 
Query:    1 QVGEKELHLCHESPTGDGGTLFEFLLPGPLAFARYLLIVPVWPMLLVYAEGASFWPFSMASRGDHSLPYSADSMWVVPQDWFRIAVPGFGSSDNDSPLSYAYWAIVPPLLWTLVTTVWVGLLAIARIFCWYFGHVEDWSAHAWGVYFSSPESPFHKGSRHVQGALGLGFTIWVCKELKRLIVFSAVLAMLVYLGFENGACFEMEWAFIFAHATWWGVMLIAHLARRKNIFKAIPPTSS-AVADRW 732
            +VGEK LHLCHES TG+GG LFEFLLPGP+   R+LL VPVWPMLLVY+EGASFWPFSMASRGDHSLP S DS+W  P DWFR+AVP    SDNDSPLSY YWAIVP LLWTLV+ VWVGLL  A + CWYFGH EDWSAH+WGVYFSS ESPF   S  +Q ALG+GFT W  +E +RL+ FSA LA +V  G+  GAC E EWAF+FA A WW  +LI H AR+KN+FK +   +  AVADRW
Sbjct:  206 RVGEKTLHLCHESATGNGGRLFEFLLPGPVTLTRFLLAVPVWPMLLVYSEGASFWPFSMASRGDHSLPPSEDSLWANPWDWFRVAVPSLSRSDNDSPLSYVYWAIVPHLLWTLVSAVWVGLLGAANLVCWYFGHAEDWSAHSWGVYFSSQESPFSVWSARLQSALGMGFTAWAAREFRRLLAFSAALAAVVVQGYRRGACLEQEWAFVFAVAAWWIAVLIGHAARKKNMFKPLNEAAGPAVADRW 450
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BLAST of mRNA_S-dermatodea_contig11609.1025.1 vs. uniprot
Match: A0A6H5JN14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN14_9PHAE)

HSP 1 Score: 231 bits (590), Expect = 2.470e-67
Identity = 101/136 (74.26%), Postives = 112/136 (82.35%), Query Frame = 1 
Query:    1 QVGEKELHLCHESPTGDGGTLFEFLLPGPLAFARYLLIVPVWPMLLVYAEGASFWPFSMASRGDHSLPYSADSMWVVPQDWFRIAVPGFGSSDNDSPLSYAYWAIVPPLLWTLVTTVWVGLLAIARIFCWYFGHVE 408
            +VGEK LHLCHES TG+GG LFEFLLPGP+   R+LL VPVWPMLLVY+EGASFWPFSMASRGDHSLP S +S+W  P DWFR+AVP    SDNDSP+SY YWAIVP LLWTLV+ VWVGLL  A + CWYFGH E
Sbjct:  206 RVGEKTLHLCHESATGNGGRLFEFLLPGPVTLTRFLLAVPVWPMLLVYSEGASFWPFSMASRGDHSLPPSGESLWANPWDWFRVAVPSLSRSDNDSPMSYVYWAIVPHLLWTLVSAVWVGLLGAANLVCWYFGHAE 341
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BLAST of mRNA_S-dermatodea_contig11609.1025.1 vs. uniprot
Match: A0A6H5JNH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNH5_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 5.640e-37
Identity = 67/110 (60.91%), Postives = 80/110 (72.73%), Query Frame = 1 
Query:  406 EDWSAHAWGVYFSSPESPFHKGSRHVQGALGLGFTIWVCKELKRLIVFSAVLAMLVYLGFENGACFEMEWAFIFAHATWWGVMLIAHLARRKNIFKAI-PPTSSAVADRW 732
            EDWSAH+WGVYFSS ESPF   S  +Q ALG+GFT W  +E +RL+ FSA LA +V  G+  GAC E EWAF+FA A WW V+LI H AR+KNIFK +    S+AVADRW
Sbjct:   10 EDWSAHSWGVYFSSQESPFSVWSWRLQSALGMGFTAWAAREFRRLLAFSAALAAVVVQGYRRGACLEQEWAFVFAVAAWWIVVLIGHAARKKNIFKPLNDAASAAVADRW 119
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11609.1025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LN52_ECTSI8.400e-11867.76Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5JN14_9PHAE2.470e-6774.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNH5_9PHAE5.640e-3760.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11609contigS-dermatodea_contig11609:277..2046 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Ec32 orthologEc-00_002780.1
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_003510.1
Exons1
Model size1770
Cds size606
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11609.1025.1prot_S-dermatodea_contig11609.1025.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11609 406..1011 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924210.516308-UTR-S-dermatodea_contig11609:276..4051622924210.516308-UTR-S-dermatodea_contig11609:276..405Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11609 277..405 +
1694079095.3706245-UTR-S-dermatodea_contig11609:276..4051694079095.3706245-UTR-S-dermatodea_contig11609:276..405Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11609 277..405 +
1622924210.5408428-UTR-S-dermatodea_contig11609:1011..20461622924210.5408428-UTR-S-dermatodea_contig11609:1011..2046Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11609 1012..2046 +
1694079095.3909411-UTR-S-dermatodea_contig11609:1011..20461694079095.3909411-UTR-S-dermatodea_contig11609:1011..2046Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11609 1012..2046 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924210.5281184-CDS-S-dermatodea_contig11609:405..10111622924210.5281184-CDS-S-dermatodea_contig11609:405..1011Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11609 406..1011 +
1694079095.382355-CDS-S-dermatodea_contig11609:405..10111694079095.382355-CDS-S-dermatodea_contig11609:405..1011Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11609 406..1011 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11609.1025.1

>prot_S-dermatodea_contig11609.1025.1 ID=prot_S-dermatodea_contig11609.1025.1|Name=mRNA_S-dermatodea_contig11609.1025.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=202bp
MLLVYAEGASFWPFSMASRGDHSLPYSADSMWVVPQDWFRIAVPGFGSSD
NDSPLSYAYWAIVPPLLWTLVTTVWVGLLAIARIFCWYFGHVEDWSAHAW
GVYFSSPESPFHKGSRHVQGALGLGFTIWVCKELKRLIVFSAVLAMLVYL
GFENGACFEMEWAFIFAHATWWGVMLIAHLARRKNIFKAIPPTSSAVADR
W*
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mRNA from alignment at S-dermatodea_contig11609:277..2046+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11609.1025.1 ID=mRNA_S-dermatodea_contig11609.1025.1|Name=mRNA_S-dermatodea_contig11609.1025.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1770bp|location=Sequence derived from alignment at S-dermatodea_contig11609:277..2046+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTGGGCGAGAAGGAGCTCCACCTCTGCCACGAGTCCCCAACAGGAGA
CGGCGGGACGTTGTTCGAATTTCTCCTCCCTGGACCCCTCGCGTTCGCCC
GATACCTTCTCATCGTTCCGGTGTGGCCCATGCTGCTCGTCTACGCGGAG
GGGGCGTCTTTTTGGCCGTTCTCGATGGCTTCCCGAGGGGACCACTCCTT
GCCCTACTCCGCGGATTCGATGTGGGTGGTGCCGCAAGACTGGTTTAGGA
TCGCCGTTCCCGGCTTTGGAAGCTCGGACAACGACAGCCCGCTGAGCTAC
GCGTACTGGGCGATCGTGCCTCCGTTGCTGTGGACTCTCGTGACGACGGT
GTGGGTAGGCCTGCTCGCGATCGCGAGGATATTCTGCTGGTACTTCGGGC
ACGTAGAGGACTGGTCGGCGCACGCGTGGGGAGTGTATTTCTCGTCGCCC
GAGTCTCCCTTTCACAAGGGGTCGCGGCACGTGCAGGGCGCCCTTGGGCT
CGGGTTCACCATCTGGGTGTGCAAGGAGTTGAAGCGCCTGATTGTGTTCT
CCGCCGTGCTGGCCATGCTGGTGTACCTCGGCTTCGAGAACGGGGCTTGC
TTTGAGATGGAGTGGGCGTTCATTTTTGCCCACGCGACCTGGTGGGGGGT
TATGCTGATCGCGCACCTCGCCAGGAGAAAAAATATCTTCAAGGCCATCC
CTCCGACCTCTTCGGCTGTGGCGGACCGGTGGTGACGAGGGCACGGAACT
GCCGTTCGTCGCTGTGTTGTTCGGAGAGGAGGACGGACCACTGCCCGTTA
TGTTCGGAGGAAGGGAGCGAGCGTCCACCTTCATGTTCGGGGTAATTGAG
ACGACCACTTTTGAATTTGGAGGAATCGGAGCGCCAGCCGTCGTATTCGG
AGGAAAATATAACCTTTTTTATTCGAAGGAAAATATGACCGTTTATTCGG
AGAGGGAGAGAGAGAGAGACCCGTTATTTTCCGAAGAATCAGTACGGTCA
CGGTGACCTTCGGAAGAAGCGAGCAAGCGAGCGTTCACTTTTTATTCGGA
GTAAACGAGACGGCCGCTGTCGCGATCGGTGGAGACGAAACGACCGCGAC
ATTACATTCGGAGGGATCGGAGCGGCAGCCGTCGTATTCGGAGATAAATA
TCGCCGTTATGTTCGGACGAGTCGGTACGCGCACCCTTGCTACATTCAGA
AGAAAACTCCACCGTTACAAAAAAAATAAGAAAATCATGAAAATCGAGCG
GCGTTAGATTCGGAGGATTCCGAACGACCTCCGCTATATTCGGAGAGAAG
GATCATAGACAGTGGTCGTATTCGGAGAGACCGAATCCGGGTCGGTCGAT
TTCGATTTTCGGTGGGGGAAAAAATTAGTCGGGGCCGATAGCGTCAACGA
GTGCCGCTTCTTGCATATATATTTTATTTTATTTTATCAACACTCCGCGC
CTGGGTAGGGCCAGTCAAATCGATGTACCCCTCGACAAGAGTCAGCCTTT
GCGCACCCCGGATCTTTGCTTCTAGAGTCGGGGTTTGGTGGTTTACCGAA
TATTCCATTATATCGGTAAATTCGGGGCCGGCTGTCGGCTTGCTCGCCCT
ATCGCTCGATGGGGAGAGAACAATCGAGTCGCGGTTCGGTGGCGACAAGA
TACACACGCAAGCCGTCACACACGCGTGTTTTGTTAGCTCGCGGTTTGGT
GTGCTTTGGGTGGTACAGTAAATCTATATCGATATTGATATCGATTTCGG
TGGCTCGATTATGTCTTGGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig11609:277..2046+

>mRNA_S-dermatodea_contig11609.1025.1 ID=mRNA_S-dermatodea_contig11609.1025.1|Name=mRNA_S-dermatodea_contig11609.1025.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1212bp|location=Sequence derived from alignment at S-dermatodea_contig11609:277..2046+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTGCTCGTCTACGCGGAGGGGGCGTCTTTTTGGCCGTTCTCGATGGC
TTCCCGAGGGGACCACTCCTTGCCCTACTCCGCGGATTCGATGTGGGTGG
TGCCGCAAGACTGGTTTAGGATCGCCGTTCCCGGCTTTGGAAGCTCGGAC
AACGACAGCCCGCTGAGCTACGCGTACTGGGCGATCGTGCCTCCGTTGCT
GTGGACTCTCGTGACGACGGTGTGGGTAGGCCTGCTCGCGATCGCGAGGA
TATTCTGCTGGTACTTCGGGCACGTAGAGGACTGGTCGGCGCACGCGTGG
GGAGTGTATTTCTCGTCGCCCGAGTCTCCCTTTCACAAGGGGTCGCGGCA
CGTGCAGGGCGCCCTTGGGCTCGGGTTCACCATCTGGGTGTGCAAGGAGT
TGAAGCGCCTGATTGTGTTCTCCGCCGTGCTGGCCATGCTGGTGTACCTC
GGCTTCGAGAACGGGGCTTGCTTTGAGATGGAGTGGGCGTTCATTTTTGC
CCACGCGACCTGGTGGGGGGTTATGCTGATCGCGCACCTCGCCAGGAGAA
AAAATATCTTCAAGGCCATCCCTCCGACCTCTTCGGCTGTGGCGGACCGG
TGGTGAATGCTGCTCGTCTACGCGGAGGGGGCGTCTTTTTGGCCGTTCTC
GATGGCTTCCCGAGGGGACCACTCCTTGCCCTACTCCGCGGATTCGATGT
GGGTGGTGCCGCAAGACTGGTTTAGGATCGCCGTTCCCGGCTTTGGAAGC
TCGGACAACGACAGCCCGCTGAGCTACGCGTACTGGGCGATCGTGCCTCC
GTTGCTGTGGACTCTCGTGACGACGGTGTGGGTAGGCCTGCTCGCGATCG
CGAGGATATTCTGCTGGTACTTCGGGCACGTAGAGGACTGGTCGGCGCAC
GCGTGGGGAGTGTATTTCTCGTCGCCCGAGTCTCCCTTTCACAAGGGGTC
GCGGCACGTGCAGGGCGCCCTTGGGCTCGGGTTCACCATCTGGGTGTGCA
AGGAGTTGAAGCGCCTGATTGTGTTCTCCGCCGTGCTGGCCATGCTGGTG
TACCTCGGCTTCGAGAACGGGGCTTGCTTTGAGATGGAGTGGGCGTTCAT
TTTTGCCCACGCGACCTGGTGGGGGGTTATGCTGATCGCGCACCTCGCCA
GGAGAAAAAATATCTTCAAGGCCATCCCTCCGACCTCTTCGGCTGTGGCG
GACCGGTGGTGA
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