mRNA_S-dermatodea_contig11606.1023.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11606.1023.1
Unique NamemRNA_S-dermatodea_contig11606.1023.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11606.1023.1 vs. uniprot
Match: D7FGV8_ECTSI (Aspartate kinase/homoserine dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FGV8_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 2.730e-17
Identity = 41/48 (85.42%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:    1 VCGFSTMDNMALLNVEGMGMAGFPGVAARLFGGLQRRGISVVLISQAS 144
            +CGFSTMDN+ALLN+EGMGMAG PGVAARLFG LQR GISV+LISQAS
Sbjct:  353 ICGFSTMDNIALLNLEGMGMAGHPGVAARLFGALQRVGISVILISQAS 400
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BLAST of mRNA_S-dermatodea_contig11606.1023.1 vs. uniprot
Match: A0A835Z198_9STRA (Aspartate kinase/homoserine dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z198_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.700e-13
Identity = 35/48 (72.92%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    1 VCGFSTMDNMALLNVEGMGMAGFPGVAARLFGGLQRRGISVVLISQAS 144
            VCGF+T+D++ALLN+EG GM G PGVA RLFG L R GISV+LISQAS
Sbjct:  324 VCGFATVDDIALLNIEGSGMIGVPGVAQRLFGSLHRMGISVILISQAS 371
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BLAST of mRNA_S-dermatodea_contig11606.1023.1 vs. uniprot
Match: W7U117_9STRA (Bifunctional aspartokinase i homoserine dehydrogenase i n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U117_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.320e-13
Identity = 35/48 (72.92%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    1 VCGFSTMDNMALLNVEGMGMAGFPGVAARLFGGLQRRGISVVLISQAS 144
            VCGFST+DNMALLN+EG GM G PG+A RLFG +Q+ GISV LI+QAS
Sbjct:  325 VCGFSTVDNMALLNLEGSGMIGVPGIANRLFGAIQQTGISVSLIAQAS 372
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BLAST of mRNA_S-dermatodea_contig11606.1023.1 vs. uniprot
Match: A0A7S4S4N0_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S4N0_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 3.160e-13
Identity = 34/48 (70.83%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:    1 VCGFSTMDNMALLNVEGMGMAGFPGVAARLFGGLQRRGISVVLISQAS 144
            VCGFS++D+MAL+NVEG GM G PGVA RLFG L+ +G++VVLISQAS
Sbjct:  362 VCGFSSIDSMALINVEGSGMVGIPGVAKRLFGTLESKGVNVVLISQAS 409
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BLAST of mRNA_S-dermatodea_contig11606.1023.1 vs. uniprot
Match: A0A7S4W1W8_9STRA (Homoserine dehydrogenase (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W1W8_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 3.170e-13
Identity = 34/48 (70.83%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:    1 VCGFSTMDNMALLNVEGMGMAGFPGVAARLFGGLQRRGISVVLISQAS 144
            VCGFS++D+MAL+NVEG GM G PGVA RLFG L+ +G++VVLISQAS
Sbjct:   99 VCGFSSIDSMALINVEGSGMVGIPGVAKRLFGTLESKGVNVVLISQAS 146
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BLAST of mRNA_S-dermatodea_contig11606.1023.1 vs. uniprot
Match: A0A7S1XKE7_9STRA (Homoserine dehydrogenase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XKE7_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 3.850e-12
Identity = 33/48 (68.75%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    1 VCGFSTMDNMALLNVEGMGMAGFPGVAARLFGGLQRRGISVVLISQAS 144
            VCGFST+D MAL+N+EG GM G PGVA RLFG L  +GI+V LI+QAS
Sbjct:   48 VCGFSTVDGMALVNLEGAGMVGVPGVAQRLFGALNEQGINVTLIAQAS 95
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BLAST of mRNA_S-dermatodea_contig11606.1023.1 vs. uniprot
Match: A0A7S2EA35_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EA35_TRICV)

HSP 1 Score: 65.9 bits (159), Expect = 4.870e-12
Identity = 32/48 (66.67%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    1 VCGFSTMDNMALLNVEGMGMAGFPGVAARLFGGLQRRGISVVLISQAS 144
            VCGFS+++ MAL+NVEG G+ G PGVA RLFG L+  G++VVLISQAS
Sbjct:  118 VCGFSSVEGMALVNVEGSGLVGVPGVARRLFGTLEGMGVNVVLISQAS 165
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BLAST of mRNA_S-dermatodea_contig11606.1023.1 vs. uniprot
Match: A0A2E9QSG2_9DELT (Bifunctional aspartate kinase/homoserine dehydrogenase I n=2 Tax=Deltaproteobacteria TaxID=28221 RepID=A0A2E9QSG2_9DELT)

HSP 1 Score: 66.6 bits (161), Expect = 1.340e-11
Identity = 35/48 (72.92%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    1 VCGFSTMDNMALLNVEGMGMAGFPGVAARLFGGLQRRGISVVLISQAS 144
            V GFST+D MALLNVEG GM G PGVA RLFG L+  G+SVV+ISQAS
Sbjct:  311 VKGFSTVDGMALLNVEGAGMIGVPGVAHRLFGALREVGVSVVMISQAS 358
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BLAST of mRNA_S-dermatodea_contig11606.1023.1 vs. uniprot
Match: A0A7S2WAX5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WAX5_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.880e-11
Identity = 30/48 (62.50%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    1 VCGFSTMDNMALLNVEGMGMAGFPGVAARLFGGLQRRGISVVLISQAS 144
            VCGF++++ MAL+NVEG GM G  GVA R+FG L+  G++VVLISQAS
Sbjct:   24 VCGFASIEKMALINVEGSGMMGVKGVARRMFGTLESAGVNVVLISQAS 71
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BLAST of mRNA_S-dermatodea_contig11606.1023.1 vs. uniprot
Match: A0A7W1S9T6_9BACT (Bifunctional aspartate kinase/homoserine dehydrogenase I n=1 Tax=Chthoniobacterales bacterium TaxID=2201154 RepID=A0A7W1S9T6_9BACT)

HSP 1 Score: 64.7 bits (156), Expect = 6.400e-11
Identity = 32/48 (66.67%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    1 VCGFSTMDNMALLNVEGMGMAGFPGVAARLFGGLQRRGISVVLISQAS 144
            V GF+T+D M+L+NVEG GM G PGVA+RLFG L+  G+SVV+ISQAS
Sbjct:  314 VKGFATVDGMSLINVEGTGMMGVPGVASRLFGALREVGVSVVMISQAS 361
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11606.1023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FGV8_ECTSI2.730e-1785.42Aspartate kinase/homoserine dehydrogenase n=2 Tax=... [more]
A0A835Z198_9STRA1.700e-1372.92Aspartate kinase/homoserine dehydrogenase n=1 Tax=... [more]
W7U117_9STRA2.320e-1372.92Bifunctional aspartokinase i homoserine dehydrogen... [more]
A0A7S4S4N0_9STRA3.160e-1370.83Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
A0A7S4W1W8_9STRA3.170e-1370.83Homoserine dehydrogenase (Fragment) n=1 Tax=Ditylu... [more]
A0A7S1XKE7_9STRA3.850e-1268.75Homoserine dehydrogenase n=1 Tax=Phaeomonas parva ... [more]
A0A7S2EA35_TRICV4.870e-1266.67Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A2E9QSG2_9DELT1.340e-1172.92Bifunctional aspartate kinase/homoserine dehydroge... [more]
A0A7S2WAX5_9STRA1.880e-1162.50Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7W1S9T6_9BACT6.400e-1166.67Bifunctional aspartate kinase/homoserine dehydroge... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11606contigS-dermatodea_contig11606:6807..6950 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.9
Seed ortholog evalue1.6e-10
Seed eggNOG ortholog2880.D7FGV8
KEGG rclassRC00002,RC00043,RC00087
KEGG koko:K12524
KEGG ReactionR00480,R01773,R01775
KEGG Pathwayko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01230
KEGG ModuleM00016,M00017,M00018,M00526,M00527
EggNOG free text desc.homoserine dehydrogenase activity
EggNOG OGs2QQBK@2759,COG0460@1
EC1.1.1.3,2.7.2.4
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size144
Cds size126
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924210.436616-CDS-S-dermatodea_contig11606:6806..69321622924210.436616-CDS-S-dermatodea_contig11606:6806..6932Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11606 6807..6932 -
1694079095.3302577-CDS-S-dermatodea_contig11606:6806..69321694079095.3302577-CDS-S-dermatodea_contig11606:6806..6932Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11606 6807..6932 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924210.4473302-UTR-S-dermatodea_contig11606:6932..69501622924210.4473302-UTR-S-dermatodea_contig11606:6932..6950Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11606 6933..6950 -
1694079095.348044-UTR-S-dermatodea_contig11606:6932..69501694079095.348044-UTR-S-dermatodea_contig11606:6932..6950Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11606 6933..6950 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11606.1023.1prot_S-dermatodea_contig11606.1023.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11606 6807..6932 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11606.1023.1

>prot_S-dermatodea_contig11606.1023.1 ID=prot_S-dermatodea_contig11606.1023.1|Name=mRNA_S-dermatodea_contig11606.1023.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=42bp
MDNMALLNVEGMGMAGFPGVAARLFGGLQRRGISVVLISQAS
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mRNA from alignment at S-dermatodea_contig11606:6807..6950-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11606.1023.1 ID=mRNA_S-dermatodea_contig11606.1023.1|Name=mRNA_S-dermatodea_contig11606.1023.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=144bp|location=Sequence derived from alignment at S-dermatodea_contig11606:6807..6950- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTTTGTGGCTTCAGCACGATGGACAACATGGCACTCTTGAATGTCGAGGG
CATGGGTATGGCAGGGTTTCCAGGTGTGGCGGCGCGTCTGTTCGGAGGGC
TCCAGCGGCGAGGGATATCTGTGGTTTTGATCTCTCAGGCAAGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig11606:6807..6950-

>mRNA_S-dermatodea_contig11606.1023.1 ID=mRNA_S-dermatodea_contig11606.1023.1|Name=mRNA_S-dermatodea_contig11606.1023.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=252bp|location=Sequence derived from alignment at S-dermatodea_contig11606:6807..6950- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGACAACATGGCACTCTTGAATGTCGAGGGCATGGGTATGGCAGGGTT
TCCAGGTGTGGCGGCGCGTCTGTTCGGAGGGCTCCAGCGGCGAGGGATAT
CTGTGGTTTTGATCTCTCAGGCAAGCATGGACAACATGGCACTCTTGAAT
GTCGAGGGCATGGGTATGGCAGGGTTTCCAGGTGTGGCGGCGCGTCTGTT
CGGAGGGCTCCAGCGGCGAGGGATATCTGTGGTTTTGATCTCTCAGGCAA
GC
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