mRNA_S-dermatodea_contig11603.1021.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11603.1021.1
Unique NamemRNA_S-dermatodea_contig11603.1021.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11603.1021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11603contigS-dermatodea_contig11603:6860..7327 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size468
Cds size417
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924210.306623-CDS-S-dermatodea_contig11603:6859..72761622924210.306623-CDS-S-dermatodea_contig11603:6859..7276Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11603 6860..7276 +
1694079095.252107-CDS-S-dermatodea_contig11603:6859..72761694079095.252107-CDS-S-dermatodea_contig11603:6859..7276Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11603 6860..7276 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924210.3225358-UTR-S-dermatodea_contig11603:7276..73271622924210.3225358-UTR-S-dermatodea_contig11603:7276..7327Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11603 7277..7327 +
1694079095.2612-UTR-S-dermatodea_contig11603:7276..73271694079095.2612-UTR-S-dermatodea_contig11603:7276..7327Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11603 7277..7327 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11603.1021.1prot_S-dermatodea_contig11603.1021.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11603 6860..7276 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11603.1021.1

>prot_S-dermatodea_contig11603.1021.1 ID=prot_S-dermatodea_contig11603.1021.1|Name=mRNA_S-dermatodea_contig11603.1021.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=139bp
GTHSGIVLVKEVLAREIVLLPSWKGLFAEGDPAASSRVVVAESLLPAVCV
YTSVLFVVLCVYGVELKGEWCALQARHPLYPGVSRERGDQHAHDEKTIPW
YHINVAHTLCALVCFVRTSECQPPSPQNVFCCCCKNRA*
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mRNA from alignment at S-dermatodea_contig11603:6860..7327+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11603.1021.1 ID=mRNA_S-dermatodea_contig11603.1021.1|Name=mRNA_S-dermatodea_contig11603.1021.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=468bp|location=Sequence derived from alignment at S-dermatodea_contig11603:6860..7327+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGACACATTCGGGAATTGTGCTTGTGAAGGAAGTGCTCGCGCGGGAAAT
TGTGTTGTTGCCTTCATGGAAGGGTCTGTTTGCAGAGGGCGACCCGGCTG
CCTCGTCCAGGGTCGTCGTGGCTGAATCGTTGTTGCCTGCTGTGTGTGTG
TATACGAGTGTTTTATTTGTTGTTTTGTGCGTTTATGGCGTTGAACTGAA
GGGGGAGTGGTGCGCGTTGCAGGCGAGGCATCCCTTGTATCCCGGAGTGT
CCCGGGAACGCGGTGACCAACACGCCCACGATGAAAAAACGATTCCGTGG
TATCATATTAATGTGGCGCATACGTTGTGCGCGCTTGTTTGCTTTGTAAG
AACCAGCGAATGTCAACCGCCCTCGCCACAGAACGTTTTTTGTTGTTGTT
GCAAAAACAGAGCGTAAAACAGCCTACTAGTTGACCGATTAGGGGCAGGC
GGGCGTGAGCTTGTGCTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11603:6860..7327+

>mRNA_S-dermatodea_contig11603.1021.1 ID=mRNA_S-dermatodea_contig11603.1021.1|Name=mRNA_S-dermatodea_contig11603.1021.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at S-dermatodea_contig11603:6860..7327+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGACACATTCGGGAATTGTGCTTGTGAAGGAAGTGCTCGCGCGGGAAAT
TGTGTTGTTGCCTTCATGGAAGGGTCTGTTTGCAGAGGGCGACCCGGCTG
CCTCGTCCAGGGTCGTCGTGGCTGAATCGTTGTTGCCTGCTGTGTGTGTG
TATACGAGTGTTTTATTTGTTGTTTTGTGCGTTTATGGCGTTGAACTGAA
GGGGGAGTGGTGCGCGTTGCAGGCGAGGCATCCCTTGTATCCCGGAGTGT
CCCGGGAACGCGGTGACCAACACGCCCACGATGAAAAAACGATTCCGTGG
TATCATATTAATGTGGCGCATACGTTGTGCGCGCTTGTTTGCTTTGTAAG
AACCAGCGAATGTCAACCGCCCTCGCCACAGAACGTTTTTTGTTGTTGTT
GCAAAAACAGAGCGTAAGGGACACATTCGGGAATTGTGCTTGTGAAGGAA
GTGCTCGCGCGGGAAATTGTGTTGTTGCCTTCATGGAAGGGTCTGTTTGC
AGAGGGCGACCCGGCTGCCTCGTCCAGGGTCGTCGTGGCTGAATCGTTGT
TGCCTGCTGTGTGTGTGTATACGAGTGTTTTATTTGTTGTTTTGTGCGTT
TATGGCGTTGAACTGAAGGGGGAGTGGTGCGCGTTGCAGGCGAGGCATCC
CTTGTATCCCGGAGTGTCCCGGGAACGCGGTGACCAACACGCCCACGATG
AAAAAACGATTCCGTGGTATCATATTAATGTGGCGCATACGTTGTGCGCG
CTTGTTTGCTTTGTAAGAACCAGCGAATGTCAACCGCCCTCGCCACAGAA
CGTTTTTTGTTGTTGTTGCAAAAACAGAGCGTAA
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