mRNA_S-dermatodea_contig11602.1020.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11602.1020.1
Unique NamemRNA_S-dermatodea_contig11602.1020.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11602.1020.1 vs. uniprot
Match: D7G900_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G900_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 3.270e-31
Identity = 66/117 (56.41%), Postives = 82/117 (70.09%), Query Frame = 2 
Query:    5 RLMRREGGAVLSSIRFTCSLRSDILELE----HEEEGQQQQAPP--GDG-AMVTRVLALHQQEIVRFCRESSAPAAGVFCDGELGPIPTVACGIFPRTAESELQAYTSCSAVLCWSP 334
            R + REGG VLSSI FTC +R D +EL      +E  Q     P  GDG A+VTRV+ALHQQE+VRF +  +APAAGVFCD E GP+  ++ GI P+TA+S  Q YTSC+AVLCW+P
Sbjct:  458 RRVEREGGVVLSSISFTCCVRLDHVELSGRRVQQEREQXXXXXPDGGDGDAVVTRVMALHQQEMVRFIKTLNAPAAGVFCDAEFGPVAAMSAGIHPKTAKSRFQGYTSCAAVLCWNP 574
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BLAST of mRNA_S-dermatodea_contig11602.1020.1 vs. uniprot
Match: A0A6H5KRG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRG6_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 6.950e-16
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 2 
Query:  173 IVRFCRESSAPAAGVFCDGELGPIPTVACGIFPRTAESELQAYTSCSAVLCWSP 334
            +V+F +  +APAAGVFCD E GP+  ++ GI P+TA+S  Q YTSC+AVLCW+P
Sbjct:    1 MVKFIKTLNAPAAGVFCDAEFGPVAAMSAGIHPKTAKSRFQGYTSCAAVLCWNP 54
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11602.1020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G900_ECTSI3.270e-3156.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRG6_9PHAE6.950e-1657.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11602contigS-dermatodea_contig11602:2596..5505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size337
Cds size336
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11602.1020.1prot_S-dermatodea_contig11602.1020.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11602 2596..5505 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924210.2498157-CDS-S-dermatodea_contig11602:2595..27621622924210.2498157-CDS-S-dermatodea_contig11602:2595..2762Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11602 2596..2762 -
1694079095.2243726-CDS-S-dermatodea_contig11602:2595..27621694079095.2243726-CDS-S-dermatodea_contig11602:2595..2762Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11602 2596..2762 -
1622924210.2644558-CDS-S-dermatodea_contig11602:4867..49541622924210.2644558-CDS-S-dermatodea_contig11602:4867..4954Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11602 4868..4954 -
1694079095.2357652-CDS-S-dermatodea_contig11602:4867..49541694079095.2357652-CDS-S-dermatodea_contig11602:4867..4954Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11602 4868..4954 -
1622924210.2771327-CDS-S-dermatodea_contig11602:5423..55051622924210.2771327-CDS-S-dermatodea_contig11602:5423..5505Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11602 5424..5505 -
1694079095.2439578-CDS-S-dermatodea_contig11602:5423..55051694079095.2439578-CDS-S-dermatodea_contig11602:5423..5505Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11602 5424..5505 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11602.1020.1

>prot_S-dermatodea_contig11602.1020.1 ID=prot_S-dermatodea_contig11602.1020.1|Name=mRNA_S-dermatodea_contig11602.1020.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=112bp
RAAHETGGWRGAFFDSIYLLAPIRHIGARARRGRAAAASTSRRRRDGDPR
VGLASAGDCAILSGVECSSGWSFLRRGAWSHTDGRLRHLPAHGGVGAAGL
HKLFGGALLEP*
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mRNA from alignment at S-dermatodea_contig11602:2596..5505-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11602.1020.1 ID=mRNA_S-dermatodea_contig11602.1020.1|Name=mRNA_S-dermatodea_contig11602.1020.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2910bp|location=Sequence derived from alignment at S-dermatodea_contig11602:2596..5505- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGAGCGGCTCATGAGACGGGAGGGTGGCGCGGTGCTTTCTTCGATTCGAT
TTACCTGCTCGCTCCGATCAGACATATTGGAGGTGAGAGAAGGAGAGAAG
AAACGCGCTCGCGAGCTGCATGCCCGCCTTGGAGTTCGAATTTTTGGAGG
CGTGCTGCGGGGGGAGTTGGTTCTGTTCGGTCGCTAGGACGGGACATAGA
TGCTCTGTTGCGTTGTGGACTGCGTGGGCGTCGTGCTGGTTGATGTGCCG
CTTTAGGCCTGCCTACATTGATGCCGCACGAGCGATGGAGCTTTGGTGCG
TGTGCTAATACATGTACATACATGTCAATTTATCTCTTGACTGCATCGGC
GTTTTACGTAGTGCCTGGTTTAACAAAGCTCGCTGTAAACAGTTTTCTAT
CGGGCAGACCACCGCGTTTGGGTTGACACGTTGTTATTCTTACGTTTCCT
TCGAGCTGATACTGACGAAATGAGCAAGCACTCCCCTCCCCTTTCGCGGG
TTTTCGTCGACGTGGCGCCCTATCATACCGCATTTTTCGGGACGACAGCA
GCTAGAGCACGAAGAGGAAGGGCAGCAGCAGCAAGCACCTCCAGGCGACG
GCGCGATGGTGACCCGCGTGTTGGCCTTGCATCAGCAGGTGTGGCTTGGC
GTGCGTGCCAGTTTAGTTTAGATGGAAAGCGGTCTTCCGCCGACAAACGC
GAACAACGGATCATTGGCGCGTTTCGAGTGCGCGCCTATTCGTTTTCCTT
TCGCTTCTAAACGGTATGGTATGTTGTGTGGAACGGGGGACGTTCTTTCT
ATTTTTGTGTTTTTGTGTTTTTTTTCCGATTGATTTGTCTTGTGTCCAAT
GCGGCCGCGCTTCCACGTTTTTTTCGTAGTCTAGACGGCTGAAAACGTGC
CTACAACAAGCAATCCAAAGATATAGGGGGGGGGGGGGGGGGGAGTTGTC
CCCCTGCCAGGCCCAATGATACTATTAATAATGTTGCAATCCGGAACATA
TTGGTTGAACCTGGAAAACTCTGAACGGATAATCTGAGATGGGCTGGCCG
ATCAGGCGCGAGCACAGCAAATGGAAAAACGCCTCCTTCTAAATCCTGCC
CGACAGAAAAACAGGCGATTTCGTTACCGCCCCCTCCCGGTCTTTGGATT
ACTCAATGGTGTGGTAGCCGTCAGCTTCCTATCCTATCACGCTCACCACC
GAAATAGGCGCATGTGCTGTAAACAAGCATAGGTAGAGCACGAACGTCTG
CTTTAGAGCACACTGTCCTCGTTGTGTTTATTTAATCCTCTTTGCTTTTG
ACCTCTTCTTGGGAGTGAGCCTGGCTGCTTTCGGGGTTAGGTAGACCATC
TGCCCACATCGTTATCGTTTTGTTCACGTCCGACCGTGATCGAACGATGG
CTCACTCCTCCAGCCGTACATACAGTGTACCTACAGTGTACATACAGTGT
ACATACAGTAGTACATACAGTAGTACATACAGTAGTACATACAGTATTAA
TAGTACATACCCGCGGTGTAAGTGTGATGATAATCCTGCTCCGTTTTTGC
TTTCGCATGCACGGCGGCGCGCTTGTGAGTGCCCTCGTCGCCATTGGAAT
CAGGGAACGACTATTAATAGTGGATAGTGGATAGCACCGGCTACACCCTT
GGGGTGTGCTTTGGCAGGACGGTAGGTGTGTGGGTTGGGAGGGCACGGTG
GCGGTACCCACGGCAGGCGTTCACCCGCGTGGGAGGGAGCCGAGCGAGCG
TACGGGGGCGGTGACAAAAGTGTATAGGTATTAGAGGCTATGCTATATAT
TGTCCATATATCGTCGTGAGCAAATTTCTTCAAGGCTCTACTCTGAATTC
TAAACAAAAATAAACGTAGGTCGGATGAAGTTCGACGCAAGAAAGGGCTC
AGTTCCGAAAGGGTGGAACTTCCGAGGAGTCAGTCACTCTCCTACAGTAG
CGGGGGCGCCGAACCCGAGGCGCGATAAAGCATCGCAGATATATAGGCGC
GCCCAGCGGTACATCCAGCCCTCGAATTCGGCGGGCGACTATTAATAGTA
AGTAATAATAATACCCACGCCAGACATGAATAGTTTGTATTTCTCGATTT
TTCATACTGTATACAAGTAATGTGACCACGACCGGTGTCGGCAATGTGCA
TTGGCGGGCCGGCCGGCCGGTCGGTTGTATTGTAGTGTGGTAATTCAGTC
AAATCTATAAGTCACGTCAAACAAGTTGTGCTGTCCTTGATGATGCTCGC
GCAAGGGGGACAGGTAAACTATCATACTCGCATATGCTCTGTCTGCACGC
CGAGGGTTTGCAGCCAGCCATCGCAAATCTGCTGCGAAGCCACGCATGCT
CTAATAGGGAGATCGATGGCAGCATGCAAGCGACGCATATGTAACTTGCG
GGTCCCCCCCTGAAGACAGAGACAGTAGAGTATCATAGTATCCCCCAAGA
AGGCGAGAAGTGATGTACACGATATAGGAAAAACAACGTTGCGCCACCAT
GGGCAAGAGTATGCAGGAAGGACCGATCGGCCATTGATGATCGATTCTGT
GGTATAATAACAATGCTCCGTCATCCTCTCGAGGACGCGTGCTCAATGGT
CTAACAGCTAAGGCATGCAAAATATGAGTACGCCCCCCCCCCCCACCGTG
CGGTGTGGACACATACATGCCCCTCACCTCACCCCACCTCACCTCACCTC
GCCCCACCCTCCACGACGCCATGCTTGACGCTGCCGCGCACAGGAGATTG
TGCGATTTTGTCGGGAGTCGAGTGCTCCAGCGGCTGGAGTTTTTTGCGAC
GGGGAGCTTGGTCCCATACCGACGGTCGCCTGCGGCATCTTCCCGCGCAC
GGCGGAGTCGGAGCTGCAGGCCTACACAAGCTGTTCGGCGGTGCTCTGCT
GGAGCCCTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11602:2596..5505-

>mRNA_S-dermatodea_contig11602.1020.1 ID=mRNA_S-dermatodea_contig11602.1020.1|Name=mRNA_S-dermatodea_contig11602.1020.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at S-dermatodea_contig11602:2596..5505- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGAGCGGCTCATGAGACGGGAGGGTGGCGCGGTGCTTTCTTCGATTCGAT
TTACCTGCTCGCTCCGATCAGACATATTGGAGCGAGCGGCTCATGAGACG
GGAGGGTGGCGCGGTGCTTTCTTCGATTCGATTTACCTGCTCGCTCCGAT
CAGACATATTGGAGCTAGAGCACGAAGAGGAAGGGCAGCAGCAGCAAGCA
CCTCCAGGCGACGGCGCGATGGTGACCCGCGTGTTGGCCTTGCATCAGCA
GCTAGAGCACGAAGAGGAAGGGCAGCAGCAGCAAGCACCTCCAGGCGACG
GCGCGATGGTGACCCGCGTGTTGGCCTTGCATCAGCAGGAGATTGTGCGA
TTTTGTCGGGAGTCGAGTGCTCCAGCGGCTGGAGTTTTTTGCGACGGGGA
GCTTGGTCCCATACCGACGGTCGCCTGCGGCATCTTCCCGCGCACGGCGG
AGTCGGAGCTGCAGGCCTACACAAGCTGTTCGGCGGTGCTCTGCTGGAGC
CCTAGGAGATTGTGCGATTTTGTCGGGAGTCGAGTGCTCCAGCGGCTGGA
GTTTTTTGCGACGGGGAGCTTGGTCCCATACCGACGGTCGCCTGCGGCAT
CTTCCCGCGCACGGCGGAGTCGGAGCTGCAGGCCTACACAAGCTGTTCGG
CGGTGCTCTGCTGGAGCCCTAG
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