mRNA_S-dermatodea_contig1160.1018.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1160.1018.1
Unique NamemRNA_S-dermatodea_contig1160.1018.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1160.1018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1160contigS-dermatodea_contig1160:11786..18999 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size538
Cds size384
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1160.1018.1prot_S-dermatodea_contig1160.1018.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1160 11786..18845 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924210.1196666-CDS-S-dermatodea_contig1160:11785..118571622924210.1196666-CDS-S-dermatodea_contig1160:11785..11857Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1160 11786..11857 +
1694079095.123234-CDS-S-dermatodea_contig1160:11785..118571694079095.123234-CDS-S-dermatodea_contig1160:11785..11857Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1160 11786..11857 +
1622924210.130155-CDS-S-dermatodea_contig1160:12457..125561622924210.130155-CDS-S-dermatodea_contig1160:12457..12556Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1160 12458..12556 +
1694079095.1370544-CDS-S-dermatodea_contig1160:12457..125561694079095.1370544-CDS-S-dermatodea_contig1160:12457..12556Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1160 12458..12556 +
1622924210.138269-CDS-S-dermatodea_contig1160:17085..171841622924210.138269-CDS-S-dermatodea_contig1160:17085..17184Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1160 17086..17184 +
1694079095.146054-CDS-S-dermatodea_contig1160:17085..171841694079095.146054-CDS-S-dermatodea_contig1160:17085..17184Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1160 17086..17184 +
1622924210.1481123-CDS-S-dermatodea_contig1160:18731..188451622924210.1481123-CDS-S-dermatodea_contig1160:18731..18845Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1160 18732..18845 +
1694079095.1551335-CDS-S-dermatodea_contig1160:18731..188451694079095.1551335-CDS-S-dermatodea_contig1160:18731..18845Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1160 18732..18845 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924210.1557689-UTR-S-dermatodea_contig1160:18845..189991622924210.1557689-UTR-S-dermatodea_contig1160:18845..18999Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1160 18846..18999 +
1694079095.1665218-UTR-S-dermatodea_contig1160:18845..189991694079095.1665218-UTR-S-dermatodea_contig1160:18845..18999Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1160 18846..18999 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1160.1018.1

>prot_S-dermatodea_contig1160.1018.1 ID=prot_S-dermatodea_contig1160.1018.1|Name=mRNA_S-dermatodea_contig1160.1018.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=128bp
KVTEIQAQATSTANKITAEESKTEALRAEFTAASTGWENTKDDLKQIRQE
RDGLHKEALRAELTAATKDWENTRDNLKKIREERNSLQNEAQRREVVGTI
APGPVIPATVLKSLWRGWQRQRHRRHL*
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mRNA from alignment at S-dermatodea_contig1160:11786..18999+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1160.1018.1 ID=mRNA_S-dermatodea_contig1160.1018.1|Name=mRNA_S-dermatodea_contig1160.1018.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=7214bp|location=Sequence derived from alignment at S-dermatodea_contig1160:11786..18999+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGGTTACGGAGATTCAAGCGCAGGCAACCTCCACGGCTAACAAGATAAC
GGCAGAGGAGTCCAAAACAGAGGTAATACAATGCCACCTCACATAATTCC
ATGCATTTCTCCGTGGTGTAAATGTACAAGTTTTTGCCTTGAATGGCCGA
ACTGCGTAGCCCAGCACCATAGCTTTGAAGCGGTAGATGCCACTTTCTGC
CGCAATGCCGTGCCTACTATCATCCGCTCGAACCCTACAGCGTCCGTCAC
GTGTCTTGCTATATTAACATATAAATGATGCCGTTCCAGTCCTAGGGGCA
TCGGCCCGAGTGAAATCATGATACCTTTAGGTAGTTTCCGATTGCTGTCC
AGGTTTTGCCATTTGTGCTATGTCATATTCCGTTTATCACGTAGTGTCTT
AATACGCAAGAGTAGATATACGGTATTCTTCCATTCCTCCATGAGGACGT
GCGTAACGGACCACGCATTTCACCACGAGTCGGTTCGGATTTCGCCAGTC
AACTACATGCAAAGTCATCTGCACCCTCCCACAAGGCCGCTCGTGCCGCA
GGTCTAGTACCGCTCGTGTAATATCCGGGCAGTACTTGTTGCCCGCCGTT
GTAGTCTCCCGAAGAGCCCATTGTGGTCGCACTAACACGCACTAATTATG
CCCTCCAAAACCTATTACGCAGGCATTGCGTGCAGAGTTTACTGCGGCGT
CGACGGGTTGGGAGAACACCAAGGACGACCTCAAACAGATACGCCAAGAA
CGGGATGGCCTTCACAAAGAGGTGCAGCAGGCTGTTTTGGAAGGAGCCCA
TTGGTGTTGCCTAAGAGTCTGGTGCTGTTGAATGTTTCGTGGTTTACTCT
GAAGCACGGTTTTTGGACAACATTGCATGGATACTGCAGAATGAGGAAGA
CTGCTCCTGTGCGGATTAAAATTGCGACCTGGAGAATGTCGAAGAGCCCT
CACTCTGAAATACATATAATATAGCGTATGGACCACGCGGAAGTGGTTCT
GTTTCCCGGACGTTTCTCTGTAAATAGATATGTTACCCACATAACAGAAG
ATTCATGCGTGCAAATATTCCGAAACCTTCCTCAACCAATAATCTGAAAA
ACAGTCACATTGCCAGAAGAATCGTTACTCGCCTACTACAAACTATGCAA
CATACATCGGCGATGAGACGCATATAGTTTTACTGCGTCGTATGCACCAC
ATGTACACGTAACACGACGCGGGTCTGTACAGCAACGGCGATGAACGATA
GTGAGATAAAAGTAGGAATGAACGCGCTGGGTTTCTTGCGGGTCTCGATA
TAATGATCGATACACCAACAGGGTTGTCGCTACTGCTGAACCACACAATT
ATAACTGCGGTAGAAGTTACCACGGTGCGACGTTGTTTCGGCCCAGCCGC
TTCCGGTGGAATCGATGCAAATGGCTAATTCGATCCTTCTTTTGGTTTCA
GTGTTTTGGTTTTCTCCCTTGGACGTTTCGGTCTATGTGGTAAAAGGTGA
CGAAGATTCAAGTGCAGGTAACCTCAGCTGCTAGGAAGATAAACGCAGAG
GCGGCCAAGGCAGAGAAGGCCAAACAAGACTCCCAGCAACGGATAGAGGA
AATATACCGCTGCCGGACATATTATAATGTATTTATGCGTGATATATTTA
ATTTGCCTTGAATGACCGAACTGCATAGTCAGGCACCATCGGTTCGAGGC
GGTAGGTTCCACGTTCTGGCGTATTGCCGTGCATACTCTCTTCTGCTCGA
ATCCTACACCCTCCGACGCTTGTCTCGATAAAGACCTATTCCTGTAAAAC
ATATGGCACCTCGTAGCATCGTTAAACGCAGTGTTAGCTGCTCTCTCAGA
CCTCCGTGCGGTAGCAATTAAAACAAAATTATGTACGTACTCGATGCTAG
CGTTGTGGAGGTTATTTCCGTTTAGAGACGAAAGTTTGCAACTTCTTTGC
CCGATCGTGAGGGCTCGGATAGCGCAATATTTCGGAATCCGGCGATATCC
TACCTCCGTCCTGTTGTCTGTTGGGTTTGACGTTATGTGATAACAAAAAT
CAATAATCCGCAGCATATCGATTTTCTTCTCACTCTCCCCACGCTTGTGC
ATGTATCGTTTGCATTTGGTGTGAGCGACAGAGGGCACCGGGGAAAGGGA
AAAATAGATATGTCTCCTTTCATGCCCAGCGCGTGGCGGTGCAGGCGTCG
CTGCATGCATGGTCCTTTCCAAGCGGCCCCCCGAGCGCCGTTCACAGTTG
GTTTGTTTCTTAACCGATGAGCAGAATTATCTGAGTCTGCATGTATATAC
ATGTACAAATGCAGATCTCTACATTGTAGCTCTATTGAGTGATTGGTTGC
AACATATTGTCACACCTATACATTGTACATAACAACATATATATTTTACG
ACTGTATGTTTGTACAAACATAGATATTTGAAAAGCACACATAATAGAGA
CGGTGGATATCTGCGTAGAGCGAGGATCGTATGTTTTGGCTAAGGGAGAA
GGTACAGGAGTTCTAGTCTCCGAACCAAAGGCATGCACACTCTGCAGTTT
GCTGAGCTTGGGCGTGGAAGCTTTGAAGTGTGCGTAGCGCCTTCTGAACA
CGCCTATTATGAGCCTTTGAATGGAAAAAGTACAAACAGGACCAGGGAGG
TTTGATATTTGTCTGGGTGAGGCCAGCCCTTTCCTTTTTGTTGTTGTTGC
TCCGCTTGGAAAAGAAAAAGACAGAACATAGGTTGCTGGGTGAAAAATAA
ATCGCAATAAAAAACTACAAAAGTTGTAACACAGAACAAAGGTGGCTGGT
TGTATGTAACTGTCAAAATACCTGGCAGGGAATGCGTCTTAGTTACCCAA
GTTTGGATGACATATTAATGGTAATTCACACTTTTCTCACTGCAACTGAG
TAATATGTACGATGTTGCAGCATTGAGTTAGGTGAGTGCGTGCAGAGGAG
TGAGTTTGTGTCCGAAAATACCTGTAGGTACATGTTCTACAGCTAAGTCA
TGTAGAATGTGTACCATAGAGTGAAATATGTATGAATAATACACGGATCT
TGAGCTATTTTGAAGTATTAACCTTCCGCCGCCATATTACTGGATCTTTA
TACAAGTGCATTGAAGTGATTTGTTTTTCGAAGGAAGCACGTTTTCGTGC
TTTGAATACCGAACCTCGTCGTCGAACATGCTATATTTTATTGCCTTGCG
CTGAGCTGACCGGCGACGCCCCTGTACGAATTTGTATATTATGCCAATCC
AGTCGTAGATGCATCGGCCGAGGTGAAATATTGTGATGATTGGTTCGATT
CCAATTGTTTTCCGTTCTTGTTTGTTTGTGTGTTTTCCTGTTCCGTTTAT
AACGTAGTCTTGATACCCAGGAACAGATGTATGGTAGTTTTTTATGCCTC
CATGAGGACGTGCGTAACGGACCACGCATCTCACCACGAGTGGGGTCAGA
TATAGGCAATCGACAACATGTTGTGTTAAAGTCGTCCCCGCCCTCCAACA
AGGCCGCTCGTGCCGCAGCTGCAAGGGGCGCTCAGCTAATGTCCGGATAG
TACTTATTGCCTGCCGTTCGAGCCTCGAGATAGAGCCAATTGTGCTCGCA
CCAAAATGCTTTAGACAAATGATTACGCAGGAATTACGTGCAGAGGTTAC
CGCGACGTCGACGGGTTGGGAGAACACGAAGGAAGTTATCAAACAGATAC
GCCAGGAACGGGATAATTTTACAAAGAAGTGCAGCAGGGTGTTTTGGAAG
GCTACTATCAGGGTTACATGTGCCCTCAGCAGAGCTCGTGCTAGCTGTGT
TCGGGGGATGGGGGGGCGCCGTCATTGAAACCAAGGATGTTGTTGCCTGG
GCGTCTGCGGCTGTTGAAATTTTTGTAGTCTACTCTGAAGCACAGCAATT
TGACCACATTGCAGGGAAAACGATCAGTGAGGAAGACTGCCCCTATGCGG
ATGCAATTTGTGACCTGGAGAATGTCAACAAAACCTTACTCTGAGCGAGA
TTCAGTCTAGTGTATGGACCACGCGAAAGTGGTTCTTTTTCACGGGATAT
TGTTTTGTTTTTCTCTGTACATGCCCTGCAGAGACGAAAAAGGTAAATAC
ACATTTCTTTTGTCACCCTGTCTCTGAAAATAGGCATTTTTTCCCATTTT
ACTTGAGGAGAACGTGTGAAAATTACAAAAAACCTTTCCCGAGGGAAAAT
CTTGCAAACAGTCACATTGCTTGAAAAATCGTTACTCGCCTACTAGAAAC
TTTGCCTACACATCGGCGATAAGACGCGAAGATTTACTGCGTCATGTGCA
CCACACATAAACGGAACACCACGCGGCTCTGTAGGGCCCCGGCGATGAAC
GATAATGATACGAAACAGGTGACTAACGCGCTGGTCGTCTTGCAGGTCTC
GATAAAATGATCGGTGCACCAACAGGGTTGTCGTCAATGCAACACCACGC
CACCTAGCTGCTGTAGAGACTTCTACGGTGCGATCTTCTCTTGGCCCAGC
GCCTCCTTCCCGTGGTTTTCAATTCAAATGGCTCATTCGATGCGTCTTCT
GGAATCGGTGTTTTTGTTATAATTCTTGGAAGTTTCGTTCTATTTGGTAA
TTGGTTGCGAAGATTCAAGCACAGGTAGCCTCTGCGGCTAGCAAGATTAA
GGCAGAGGTGGCCAAAACAGAGAAGTCCAATCAAGACTCCCAGCAACAGA
TAGAGGTAAAGCAGCATCGCCGGACATGTTTTGATGTATTTCGTTTTCGG
CGATATTTATGTTTTCCTTTGAATGACCGAACTGCATAGCCAGGCATCAT
CGCTTCAAGCCGGTAGATGCCACGTTCTGCCGTAATGCTGTTCTCATGCT
TGTGTGCCCGATCCGCACACCGTCCGTCAGTGTCTATAAGTAATAATTTA
TATATGTAATATGCCGTTCCAGTCGTACCAGCTTCGGCCGTACCGAAATC
ATGAGATGATTTGGTAACAGGTCGATTCCGAATTTTGTCGGGTATTTCAC
GTTTGCGATTTTTTCTCTTCCGTTCATCACGTAGTCTTGATACGCAGTTG
TAGATGTATGATAAGTTTCAATTGTTCAATACGGACGTGCGTAACAGACC
ACGCCTCTCACCACGAGCCCAACCGGATTTAGCCAATCAACTGCATGTAT
TGTGAACGTCATACCCACTTTCACGCTCTCGTCCCGCAGCTCTAAATGCT
GCACGTGTAATCTCCGTTCAGTGCCTTTTGCCCGCCGTTGTATTGATCAA
AAATATCACATTGTGCTCGCACTAATTGATCTCGACAAATTATCACGCAG
GCATTGCGTGCAGAGCTTACCGCGGCAACGAAGGATTGGGAGAACACGAG
GGACAATCTCAAAAAGATACGCGAGGAACGGAACTCCCTTCAAAACGAGG
TGCAGCAGGGTGTTTTGGAAGGGTTAAGTCAATGTTGCGTGTGCGCTCAG
AATAAGTTGTGCTAACTCTGTTTGGGGAGGTAATGTCGTTCGTTGTAAAC
ATGCGCGGTGTTTTCTGAACGCCGGCTGAGGTTAAATGTTTTGTGGTTTA
CCCTGAAGCACAAGATTTGCGACAGATTTCACGGAAAATGCGGAACAAGA
AAGACTGCTACTATTGGGATGAAAAGCCGGACGTGGAGCATGTCAAAGAG
CCCCTACCTTGCGCGGGGTTTTAGAGTTTATTGACCACACCAAAGTGATT
ATTTTCACCGAACAATTATTTACCTTCCTCCGGAATTTGTTTTGCAGACA
AGAATACCTTAAATACATTTTATGTCTCTGGAACGTTTCCGAGAAAAATC
TTTACTGTTCCTGTTTATGGGAGGTGTGGGAAACTATCCCACCCTTTCTC
GAGCACAATCCGGTAAAGCAGCATTGCCCAAATAATCGTTGCTTACCTAC
TGCAGATTTAACTATGTAACATAGAGCGGCGATAAAACGTGACCATTTGG
TTCTCCTCACGTGCAGCACACGTACAGATATCACCACGCCGCTCCGTAGG
GCAACGGCGATGAATGATAGAAAGAGTAAACGGTTGGTTCACCCGCTGGT
CGCCTTGCGGGTCTCAACACGTTGATCCATGCAGCAGCATGGTTGTCGTT
ACTACTGCAAAACGCCTCGGGAACTGCTGTGGCGTCGTGTTGATGACCCC
TCGCACGATGTCTCCTCGCGGACACAACAATCCTTTATCGGCGCCACCGC
GAGTCCGCACCGATCGGTGGCTGTTTCTTTCTCCACACAATGTGGTCTCA
CATGGTGTTTTCAAGAACAAATCATATCTCACCCCGCAGATCGCAGCGGA
CGCTCCGTTTTCTCAGGTGTAGCCAGCAATTTTATATCTGAACAAGAGAA
TCCCGATCCGGCCGTAGGGTTCCAAACTATTACTGCGTATGGGAGCTCCC
TTTAAGTTTTTACGTGCGCAAGGCCGACACAATGTGATTTATATTGACCT
CACTCCGCACCAACCCCTGACGTTGCTTTCTGCATTTCCTGTTGAAATGA
AGCTCGAAGCAAGGGTGGCTTTGAATGCGGACATTGCCTCCAATTTAGTG
GAACACTCCAAGGCCTTAGGGCATCGGGCAAAGAGTGTCAAAGGTGGACC
CGGTACAGCAGTCCAGGCACGTTGTCTGTACTCGATGCTTAGGTGTATTT
TAGATTAGCGATTTTGAACGCTTCAAGGGCTGTTGGAATGGTAACCAATT
TCCCAAAAGCAACCCGGTATAGAACACGACGCAAAAGTGGACGCTGCCTA
GGGCAAACGCCTTGTTCAGTGTGCTGATCCATGCGCGAAGACATCAAAGC
CTATGCGGAATTGTGTGATGCAATCGCGTGGCTCAGCTATCCGTTTCATG
ATCCCACCTCTATCGCAGATTGGCATAAAATAGCTTTAGAAGGAGCTGAC
GATAAAAAAACATGTTTATGCCGCCCGTCGATTACGCCTCCCGCAGGCCC
AGAGGAGGGAAGTGGTGGGCACGATAGCTCCAGGACCGGTAATACCAGCG
ACCGTGCTGAAATCGTTATGGCGAGGCTGGCAACGACAGCGTCACCGGCG
GCACTTGTAGCGGCAGCAGCAGCGGCGCAATCCACAGGAGGGGGGCCAGC
ATCCGAATTACCAACGCCAGTGGCAGCACAACCATCGGGACGTGTAAAGG
GCGGGGTGGTGGGGGAAGGAGAGCTGGACGACAACATGGCCGTATGCGAA
ACCAAAAATGAGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1160:11786..18999+

>mRNA_S-dermatodea_contig1160.1018.1 ID=mRNA_S-dermatodea_contig1160.1018.1|Name=mRNA_S-dermatodea_contig1160.1018.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at S-dermatodea_contig1160:11786..18999+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGGTTACGGAGATTCAAGCGCAGGCAACCTCCACGGCTAACAAGATAAC
GGCAGAGGAGTCCAAAACAGAGAAGGTTACGGAGATTCAAGCGCAGGCAA
CCTCCACGGCTAACAAGATAACGGCAGAGGAGTCCAAAACAGAGGCATTG
CGTGCAGAGTTTACTGCGGCGTCGACGGGTTGGGAGAACACCAAGGACGA
CCTCAAACAGATACGCCAAGAACGGGATGGCCTTCACAAAGAGGCATTGC
GTGCAGAGTTTACTGCGGCGTCGACGGGTTGGGAGAACACCAAGGACGAC
CTCAAACAGATACGCCAAGAACGGGATGGCCTTCACAAAGAGGCATTGCG
TGCAGAGCTTACCGCGGCAACGAAGGATTGGGAGAACACGAGGGACAATC
TCAAAAAGATACGCGAGGAACGGAACTCCCTTCAAAACGAGGCATTGCGT
GCAGAGCTTACCGCGGCAACGAAGGATTGGGAGAACACGAGGGACAATCT
CAAAAAGATACGCGAGGAACGGAACTCCCTTCAAAACGAGGCCCAGAGGA
GGGAAGTGGTGGGCACGATAGCTCCAGGACCGGTAATACCAGCGACCGTG
CTGAAATCGTTATGGCGAGGCTGGCAACGACAGCGTCACCGGCGGCACTT
GTAGGCCCAGAGGAGGGAAGTGGTGGGCACGATAGCTCCAGGACCGGTAA
TACCAGCGACCGTGCTGAAATCGTTATGGCGAGGCTGGCAACGACAGCGT
CACCGGCGGCACTTGTAG
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