prot_S-dermatodea_contig116.1016.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig116.1016.1
Unique Nameprot_S-dermatodea_contig116.1016.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length373
Homology
BLAST of mRNA_S-dermatodea_contig116.1016.1 vs. uniprot
Match: D8LF30_ECTSI (C3HC-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF30_ECTSI)

HSP 1 Score: 309 bits (792), Expect = 2.680e-98
Identity = 193/418 (46.17%), Postives = 245/418 (58.61%), Query Frame = 0
Query:    1 MCARYGWVNTGRDALACKCCSTELQYSEEQ-GTD--------------------------SFLSLLKSRHHPLCPWNGNACPVEFLQLPPMAAEDWCSEFLARLETLTALATATALPAVSLPSDFEEQCPGGLSTLLTKSRP-LLANGSRCSDDTTAAAPAAGRPDFVGATAGEGSDPAVNRAGDKIRDSNSGGTGGDPLAGVGDEVLGTAAAIAMFGWRSV-------STAASSP--------SKQAXXXXXXXVGEKPSPRLYCAVCNRRVATDNFLAVETG-SKAIYSGGADSNAEDA---VASPQGGGDEMRSGKRRRLSGGGTPLKAMDLAAEHRSFCPWAVVHPVVEGESAMEGAAPGWQQSLKALLSRAEPHQQTESPPVDVDGEGFKEEASGKAEEALQKVQKVLGVLMR 371
            +CARYGW+NTGRD L+C+CCS +L+++++  G+D                          SF S L+S+HH LCPWNGNACP EFLQLPPMA ED  ++FLARL++L  +  A ALP VSLPS FE+ CPGGLS L  K+ P ++      S++ TA A    R     + +G+ +  A NR                 +   GDE+LGTAAAIAMFGW+S        + AA SP        S  A          K   RL CA+C RR+ TDNFL +E G S  +    A + AE++   ++SP+G G   RSGKRRRLSGGGTPLK MDLA EHRSFCPWA VHP V GE A+EGA PGW+  L+A+L    P +Q +      +  GF + A+G+ E ALQKVQKVLGVLMR
Sbjct:   91 VCARYGWINTGRDTLSCQCCSAQLRFADQAAGSDGNAANDDVCGXXXXXIVAVVEPTPSSSFSSRLQSQHHDLCPWNGNACPREFLQLPPMAVEDQLADFLARLDSLLPVMRAAALPEVSLPSTFEQHCPGGLSALAAKAMPSVVETREETSENRTAGAHKRQR-----SGSGKAAGSADNRE----------------MLRFGDEMLGTAAAIAMFGWQSAPATVPVSACAAVSPTEGSSSNGSTVAVADGGARATAKSPARLSCALCKRRLVTDNFLTLEAGPSSGVGCTAAGTGAEESPGVLSSPEGRGGSGRSGKRRRLSGGGTPLKPMDLAVEHRSFCPWAAVHPPVAGEEAIEGAVPGWRLPLEAVLGWQNPSKQEQVLSTQKERGGFSDAANGEVEGALQKVQKVLGVLMR 487          
BLAST of mRNA_S-dermatodea_contig116.1016.1 vs. uniprot
Match: A0A836CG06_9STRA (C3HC zinc finger-like-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG06_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 4.200e-11
Identity = 90/359 (25.07%), Postives = 116/359 (32.31%), Query Frame = 0
Query:    2 CARYGWVNTGRDALACKCC----------STELQYSEEQGTDSFLSL---------------LKSRHHPLCPWNGNACPVEFLQLPPMAAEDWCSEFLARLETLTA--LATATALPAVSLPSDFEEQCPG-GLSTLLTKSRPLLANGSRCSDDTTAAAPAAGRPDFVGATAGEGSDPAVNRAGDKIRDSNSGGTGGDPLAGVGDEVLGTAAAIAMFGWRSVSTAASSPSKQAXXXXXXXVGEKPSPRLYCAVCNRRVATDNFLAVETGSKAIYSGGADSNAEDAVASPQGGGDEMRSGKRRRLSGG-GTPLKAMDLAAEHRSFCPWAVVHPV-VEGESAMEGAAPGWQQSLKALLSRAE 330
            CAR+GW NTG D L C  C            E + + +  +D+  +                L SRH   CPW+ + CP  FL  P         +  ARL TL          LP V LP D  E  P     T L     L+ N S                                                        E  G A A+A+FGW   S  A++                   RL CA C R + T NF      +                             KRRRLSG   +PL  +D   EH ++CPW    P     E     +APGW+Q+L+AL+  AE
Sbjct:  151 CARHGWTNTGPDTLTCVSCRATAAFGAPSDVEDEAAAQDASDACTNAAAEAPSVPSTDASDALTSRHRDFCPWHASPCPQSFLSYPLTPGGALLRDARARLRTLLPPLXXXXXXLPRVDLPHDALEAAPALAALTELAVEANLVRNSSXXXXXX------------------------XXXXXXXXXXXXXXXXXXXXXXXXXGEGWGAAVALALFGWERGSEEATT--------------RADGVRLRCACCGRTIGTWNFAPQHPAAAXXXXXXX---------------XXXXXXKRRRLSGETASPLNPLD---EHHAYCPWVAEPPCGTAQEGGRAASAPGWRQTLEALVEAAE 453          
BLAST of mRNA_S-dermatodea_contig116.1016.1 vs. uniprot
Match: UPI001C4B8F1E (nuclear-interacting partner of ALK n=2 Tax=Epinephelini TaxID=1505891 RepID=UPI001C4B8F1E)

HSP 1 Score: 56.6 bits (135), Expect = 4.060e-5
Identity = 36/101 (35.64%), Postives = 45/101 (44.55%), Query Frame = 0
Query:    1 MCARYGWVNTGRDALACKCCSTELQYS-------EEQGTD--SFLSLLKSRHHPLCPWNGNACPVEFLQLPPMAAEDWCSEFLARLETLTALATATALPAV 92
            MCARYGW+N GRD L C  C   L  S       E+ GT        L+++H   CPW    CP  F  +P        + FL R +    L  A  LPA+
Sbjct:   94 MCARYGWINIGRDMLKCSSCQAFLCASLQPTLDFEKYGTRIAEISRQLQTQHEKFCPWPDFPCPERFWLVPASEPSTLLAAFLERFQRTCLL--AQQLPAM 192          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig116.1016.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LF30_ECTSI2.680e-9846.17C3HC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A836CG06_9STRA4.200e-1125.07C3HC zinc finger-like-domain-containing protein n=... [more]
UPI001C4B8F1E4.060e-535.64nuclear-interacting partner of ALK n=2 Tax=Epineph... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012935Zinc finger, C3HC-likePFAMPF07967zf-C3HCcoord: 2..84
e-value: 1.6E-11
score: 44.3
NoneNo IPR availablePANTHERPTHR15835:SF2NUCLEAR-INTERACTING PARTNER OF ALKcoord: 2..338
NoneNo IPR availablePANTHERPTHR15835NUCLEAR-INTERACTING PARTNER OF ALKcoord: 2..338

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig116contigS-dermatodea_contig116:13783..19719 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig116.1016.1mRNA_S-dermatodea_contig116.1016.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig116 13681..22634 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig116.1016.1 ID=prot_S-dermatodea_contig116.1016.1|Name=mRNA_S-dermatodea_contig116.1016.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=373bp
MCARYGWVNTGRDALACKCCSTELQYSEEQGTDSFLSLLKSRHHPLCPWN
GNACPVEFLQLPPMAAEDWCSEFLARLETLTALATATALPAVSLPSDFEE
QCPGGLSTLLTKSRPLLANGSRCSDDTTAAAPAAGRPDFVGATAGEGSDP
AVNRAGDKIRDSNSGGTGGDPLAGVGDEVLGTAAAIAMFGWRSVSTAASS
PSKQASGGGGGGVGEKPSPRLYCAVCNRRVATDNFLAVETGSKAIYSGGA
DSNAEDAVASPQGGGDEMRSGKRRRLSGGGTPLKAMDLAAEHRSFCPWAV
VHPVVEGESAMEGAAPGWQQSLKALLSRAEPHQQTESPPVDVDGEGFKEE
ASGKAEEALQKVQKVLGVLMRV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012935Znf_C3HC-like